Wall clock time and date at job start Mon Mar 30 2020 02:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53002 * 109.47628 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.87800 * 305.70429 * 4 3 2 6 6 N 1.47445 * 109.88528 * 66.73305 * 4 3 2 7 7 C 1.47843 * 108.56547 * 118.42241 * 6 4 3 8 8 C 1.54910 * 104.79928 * 24.09174 * 7 6 4 9 9 C 1.54319 * 109.89034 * 184.67169 * 4 3 2 10 10 H 1.08998 * 110.70517 * 336.69458 * 9 4 3 11 11 C 1.50698 * 110.70603 * 99.92553 * 9 4 3 12 12 H 1.08000 * 119.99949 * 0.02562 * 11 9 4 13 13 C 1.37877 * 120.00285 * 179.97438 * 11 9 4 14 14 N 1.31518 * 119.99645 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00131 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47253 * 60.00147 * 15 13 11 17 17 H 1.48509 * 109.46807 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46786 * 299.99663 * 15 13 11 19 19 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 22 22 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 23 23 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 24 24 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 25 25 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 26 26 H 1.00896 * 111.00267 * 356.14908 * 6 4 3 27 27 H 1.08993 * 110.37723 * 142.92304 * 7 6 4 28 28 H 1.09003 * 110.36924 * 265.15498 * 7 6 4 29 29 H 1.08990 * 110.99093 * 81.02217 * 8 7 6 30 30 H 1.08995 * 110.99463 * 204.80690 * 8 7 6 31 31 H 0.97002 * 119.99980 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9410 0.8442 0.8315 6 7 4.0710 0.8951 -1.2747 7 6 4.8581 1.9423 -1.9600 8 6 5.3289 2.8883 -0.8272 9 6 4.0950 2.8889 0.1175 10 1 3.3454 3.6004 -0.2286 11 6 4.5054 3.1926 1.5354 12 1 4.4089 2.4354 2.2994 13 6 5.0050 4.4367 1.8571 14 7 5.1229 5.3586 0.9266 15 14 5.5143 4.8129 3.6145 16 1 6.5893 3.8764 4.0296 17 1 6.0141 6.2089 3.6969 18 1 4.3436 4.6529 4.5141 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.6766 1.9564 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 3.3101 0.5764 -1.8555 27 1 5.7161 1.5013 -2.4672 28 1 4.2333 2.4817 -2.6719 29 1 6.2056 2.4849 -0.3207 30 1 5.5283 3.8886 -1.2115 31 1 5.4747 6.2338 1.1528 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261112288.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:26 Heat of formation + Delta-G solvation = -26.334779 kcal Electronic energy + Delta-G solvation = -11453.798195 eV Core-core repulsion = 9540.844457 eV Total energy + Delta-G solvation = -1912.953738 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.01232 -34.01748 -32.60853 -29.16096 -28.90928 -25.41211 -23.60220 -21.21461 -19.57775 -19.16597 -16.45597 -15.43587 -14.75574 -14.43307 -13.75126 -13.33477 -12.42880 -12.19053 -12.10829 -11.99086 -11.32941 -10.97850 -10.90806 -10.78000 -10.66682 -10.55236 -10.26575 -9.96335 -9.58954 -9.03589 -8.84692 -8.36085 -7.57215 -6.00227 -4.02273 3.33414 3.37758 3.40699 4.45331 5.14279 5.31170 5.34916 5.37435 5.52089 5.93136 5.94587 6.13518 6.15994 6.18099 6.22154 6.37959 6.49277 6.53329 6.72530 6.81769 6.97369 7.23824 7.28066 7.64271 7.65409 7.93286 8.02324 8.21969 8.46248 8.99358 9.61347 11.09947 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.040347 B = 0.012575 C = 0.010341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.819612 B = 2226.051709 C = 2706.902183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.128 4.128 4 C 0.076 3.924 5 H 0.074 0.926 6 N -0.684 5.684 7 C 0.038 3.962 8 C -0.107 4.107 9 C 0.040 3.960 10 H 0.031 0.969 11 C -0.509 4.509 12 H 0.056 0.944 13 C 0.062 3.938 14 N -0.891 5.891 15 Si 0.890 3.110 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 H 0.052 0.948 20 H 0.047 0.953 21 H 0.049 0.951 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.320 0.680 27 H 0.057 0.943 28 H 0.025 0.975 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.893 -6.381 -2.866 8.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.167 4.167 4 C -0.032 4.032 5 H 0.092 0.908 6 N -0.314 5.314 7 C -0.091 4.091 8 C -0.146 4.146 9 C 0.021 3.979 10 H 0.049 0.951 11 C -0.547 4.547 12 H 0.074 0.926 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.718 3.282 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.203 1.203 19 H 0.071 0.929 20 H 0.066 0.934 21 H 0.068 0.932 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.136 0.864 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.271 -6.534 -2.614 8.232 hybrid contribution -0.403 0.955 0.600 1.198 sum -4.674 -5.579 -2.013 7.551 Atomic orbital electron populations 1.21791 0.96768 1.00747 1.01522 1.21552 0.94785 0.97875 1.01810 1.22075 0.97231 0.95467 1.01917 1.22497 0.91339 0.98110 0.91295 0.90826 1.62137 1.26264 1.36966 1.05993 1.22910 0.96554 0.92678 0.96961 1.22674 1.00044 0.97194 0.94667 1.19896 0.92978 0.89598 0.95419 0.95074 1.21044 1.42276 0.97732 0.93654 0.92585 1.24980 0.95673 0.96299 0.97011 1.69955 1.45887 1.04539 1.32603 0.86683 0.78995 0.77223 0.85254 1.20244 1.21377 1.20303 0.92912 0.93410 0.93196 0.92180 0.92272 0.93176 0.91226 0.86442 0.92420 0.95647 0.92653 0.91489 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.55 16 2 C -0.12 -1.83 5.81 -26.73 -0.16 -1.98 16 3 C -0.13 -2.32 4.42 -26.73 -0.12 -2.44 16 4 C 0.08 1.62 3.05 -66.72 -0.20 1.42 16 5 H 0.07 1.67 7.63 -51.93 -0.40 1.28 16 6 N -0.68 -13.30 7.26 -103.81 -0.75 -14.05 16 7 C 0.04 0.76 7.58 -2.30 -0.02 0.74 16 8 C -0.11 -2.57 5.96 -24.45 -0.15 -2.72 16 9 C 0.04 1.02 2.31 -89.81 -0.21 0.81 16 10 H 0.03 0.85 7.85 -51.93 -0.41 0.44 16 11 C -0.51 -14.06 8.47 -34.44 -0.29 -14.35 16 12 H 0.06 1.53 7.53 -52.49 -0.40 1.14 16 13 C 0.06 1.73 5.36 -17.82 -0.10 1.64 16 14 N -0.89 -25.82 12.51 55.43 0.69 -25.13 16 15 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 20 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.06 0.85 7.02 -51.93 -0.36 0.48 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.32 5.47 7.10 -39.29 -0.28 5.19 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 1.39 8.04 -51.93 -0.42 0.97 16 30 H 0.07 1.70 7.78 -51.93 -0.40 1.30 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 249.91 15.07 3.77 3.77 Total: -1.00 -28.16 249.91 -7.36 -35.53 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.18 Total: 1.87 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -0.87 Total: -18.44 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: -0.06 Total: -39.18 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.16 -7.36 -35.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261112288.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.190 kcal (2) G-P(sol) polarization free energy of solvation -28.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds