Wall clock time and date at job start Mon Mar 30 2020 02:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53002 * 109.47628 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.87800 * 305.70429 * 4 3 2 6 6 N 1.47445 * 109.88528 * 66.73305 * 4 3 2 7 7 C 1.47843 * 108.56547 * 118.42241 * 6 4 3 8 8 C 1.54910 * 104.79928 * 24.09174 * 7 6 4 9 9 C 1.54319 * 109.89034 * 184.67169 * 4 3 2 10 10 H 1.08998 * 110.70517 * 336.69458 * 9 4 3 11 11 C 1.50698 * 110.70603 * 99.92553 * 9 4 3 12 12 H 1.08000 * 119.99949 * 0.02562 * 11 9 4 13 13 C 1.37877 * 120.00285 * 179.97438 * 11 9 4 14 14 N 1.31518 * 119.99645 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00131 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47253 * 60.00147 * 15 13 11 17 17 H 1.48509 * 109.46807 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46786 * 299.99663 * 15 13 11 19 19 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 22 22 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 23 23 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 24 24 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 25 25 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 26 26 H 1.00896 * 111.00267 * 356.14908 * 6 4 3 27 27 H 1.08993 * 110.37723 * 142.92304 * 7 6 4 28 28 H 1.09003 * 110.36924 * 265.15498 * 7 6 4 29 29 H 1.08990 * 110.99093 * 81.02217 * 8 7 6 30 30 H 1.08995 * 110.99463 * 204.80690 * 8 7 6 31 31 H 0.97002 * 119.99980 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9410 0.8442 0.8315 6 7 4.0710 0.8951 -1.2747 7 6 4.8581 1.9423 -1.9600 8 6 5.3289 2.8883 -0.8272 9 6 4.0950 2.8889 0.1175 10 1 3.3454 3.6004 -0.2286 11 6 4.5054 3.1926 1.5354 12 1 4.4089 2.4354 2.2994 13 6 5.0050 4.4367 1.8571 14 7 5.1229 5.3586 0.9266 15 14 5.5143 4.8129 3.6145 16 1 6.5893 3.8764 4.0296 17 1 6.0141 6.2089 3.6969 18 1 4.3436 4.6529 4.5141 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.6766 1.9564 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 3.3101 0.5764 -1.8555 27 1 5.7161 1.5013 -2.4672 28 1 4.2333 2.4817 -2.6719 29 1 6.2056 2.4849 -0.3207 30 1 5.5283 3.8886 -1.2115 31 1 5.4747 6.2338 1.1528 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261112288.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:26 Heat of formation + Delta-G solvation = -44.264027 kcal Electronic energy + Delta-G solvation = -11454.575666 eV Core-core repulsion = 9540.844457 eV Total energy + Delta-G solvation = -1913.731209 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.73161 -35.46036 -34.59963 -30.98913 -30.51972 -27.18622 -25.34625 -22.61532 -21.34256 -20.93435 -18.54392 -17.05017 -16.56349 -16.10445 -15.39868 -14.70580 -14.17599 -13.90963 -13.57657 -13.50378 -13.02382 -12.79930 -12.64178 -12.54500 -12.38696 -11.99724 -11.92450 -11.56160 -11.37309 -10.93795 -10.78727 -10.47711 -9.19837 -8.14842 -6.23783 1.40107 1.41621 1.49167 2.41975 3.16391 3.52815 4.03331 4.14929 4.17021 4.38093 4.44109 4.56858 4.71275 4.81821 4.91373 4.96862 5.02441 5.09979 5.24859 5.34420 5.35417 5.45405 5.54636 5.60934 5.70369 5.89581 6.15343 6.36249 6.72939 6.84976 7.43327 8.94624 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.040347 B = 0.012575 C = 0.010341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.819612 B = 2226.051709 C = 2706.902183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.121 4.121 4 C 0.085 3.915 5 H 0.057 0.943 6 N -0.679 5.679 7 C 0.049 3.951 8 C -0.105 4.105 9 C 0.032 3.968 10 H 0.002 0.998 11 C -0.527 4.527 12 H 0.052 0.948 13 C 0.012 3.988 14 N -0.921 5.921 15 Si 0.954 3.046 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.270 1.270 19 H 0.048 0.952 20 H 0.068 0.932 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.070 0.930 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.339 0.661 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.036 0.964 30 H 0.044 0.956 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.493 -7.614 -3.013 9.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.160 4.160 4 C -0.024 4.024 5 H 0.075 0.925 6 N -0.309 5.309 7 C -0.080 4.080 8 C -0.144 4.144 9 C 0.012 3.988 10 H 0.020 0.980 11 C -0.566 4.566 12 H 0.070 0.930 13 C -0.187 4.187 14 N -0.560 5.560 15 Si 0.779 3.221 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.195 1.195 19 H 0.067 0.933 20 H 0.087 0.913 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.089 0.911 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.156 0.844 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.884 -7.785 -2.768 9.598 hybrid contribution -0.209 1.351 0.625 1.503 sum -5.093 -6.434 -2.143 8.481 Atomic orbital electron populations 1.21758 0.94838 1.02189 1.01701 1.21485 0.96431 0.95193 1.02210 1.21972 0.94903 0.97867 1.01236 1.22235 0.93356 0.95030 0.91770 0.92476 1.62063 1.26955 1.36325 1.05585 1.22821 0.97565 0.92026 0.95618 1.22504 0.98946 0.96990 0.95947 1.19878 0.92863 0.91513 0.94514 0.97975 1.21393 1.42299 0.97933 0.94936 0.92966 1.25766 0.95716 0.96194 1.01017 1.70077 1.46620 1.04811 1.34478 0.85677 0.78824 0.77087 0.80499 1.19691 1.20943 1.19481 0.93277 0.91337 0.92561 0.92531 0.91103 0.92822 0.93003 0.84394 0.90206 0.94259 0.94522 0.93769 0.93068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.91 71.98 0.71 -2.64 16 2 C -0.12 -3.19 5.81 30.59 0.18 -3.01 16 3 C -0.12 -4.28 4.42 30.59 0.14 -4.14 16 4 C 0.09 3.58 3.05 45.26 0.14 3.72 16 5 H 0.06 2.59 7.63 -2.39 -0.02 2.57 16 6 N -0.68 -25.04 7.26 -482.36 -3.50 -28.54 16 7 C 0.05 1.87 7.58 86.77 0.66 2.52 16 8 C -0.11 -5.12 5.96 32.07 0.19 -4.93 16 9 C 0.03 1.62 2.31 -10.27 -0.02 1.60 16 10 H 0.00 0.12 7.85 -2.39 -0.02 0.10 16 11 C -0.53 -29.71 8.47 25.60 0.22 -29.50 16 12 H 0.05 2.90 7.53 -2.91 -0.02 2.88 16 13 C 0.01 0.67 5.36 84.65 0.45 1.12 16 14 N -0.92 -54.43 12.51 21.45 0.27 -54.16 16 15 Si 0.95 44.38 29.54 68.60 2.03 46.40 16 16 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 17 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 20 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 21 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 22 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.07 1.80 7.02 -2.39 -0.02 1.78 16 24 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.34 10.55 7.10 -89.70 -0.64 9.91 16 27 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.04 1.87 8.04 -2.39 -0.02 1.85 16 30 H 0.04 2.30 7.78 -2.39 -0.02 2.29 16 31 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -60.37 249.91 1.90 -58.47 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.44 Total: 13.07 kcal Atomic # 6 Polarization: -37.91 SS G_CDS: 2.66 Total: -35.25 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -3.23 Total: -82.70 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -60.37 1.90 -58.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261112288.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.204 kcal (2) G-P(sol) polarization free energy of solvation -60.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds