Wall clock time and date at job start Mon Mar 30 2020 01:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46851 * 110.99876 * 2 1 4 4 C 1.53034 * 109.52234 * 185.83795 * 3 2 1 5 5 C 1.53119 * 109.28064 * 300.82635 * 4 3 2 6 6 C 1.53114 * 109.16056 * 57.65465 * 5 4 3 7 7 C 1.53004 * 109.53856 * 62.30771 * 6 5 4 8 8 C 1.50705 * 109.50309 * 182.40328 * 6 5 4 9 9 H 1.08000 * 119.99906 * 356.92194 * 8 6 5 10 10 C 1.37881 * 120.00030 * 176.91656 * 8 6 5 11 11 N 1.31517 * 119.99875 * 6.44823 * 10 8 6 12 12 Si 1.86801 * 119.99851 * 186.44964 * 10 8 6 13 13 H 1.48505 * 109.46932 * 265.09646 * 12 10 8 14 14 H 1.48496 * 109.47129 * 25.09788 * 12 10 8 15 15 H 1.48504 * 109.47084 * 145.09820 * 12 10 8 16 16 C 1.46844 * 111.00216 * 124.21289 * 2 1 3 17 17 H 1.08992 * 109.47079 * 295.78673 * 1 2 3 18 18 H 1.08997 * 109.47125 * 55.78838 * 1 2 3 19 19 H 1.09004 * 109.47094 * 175.78395 * 1 2 3 20 20 H 1.08998 * 109.46615 * 305.85961 * 3 2 1 21 21 H 1.09005 * 109.45855 * 65.83764 * 3 2 1 22 22 H 1.09005 * 109.50189 * 60.76807 * 4 3 2 23 23 H 1.08997 * 109.50709 * 180.88085 * 4 3 2 24 24 H 1.08998 * 109.52556 * 297.74564 * 5 4 3 25 25 H 1.09000 * 109.52324 * 177.55934 * 5 4 3 26 26 H 1.09001 * 109.47107 * 177.98408 * 7 6 5 27 27 H 1.08996 * 109.46690 * 297.98469 * 7 6 5 28 28 H 1.08996 * 109.46967 * 57.98722 * 7 6 5 29 29 H 0.97003 * 119.99933 * 179.97438 * 11 10 8 30 30 H 1.09006 * 109.46146 * 54.14613 * 16 2 1 31 31 H 1.08995 * 109.45637 * 294.17528 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1188 0.5369 1.0143 6 6 3.5182 -0.8715 1.0207 7 6 3.8876 -1.5912 -0.2780 8 6 4.0599 -1.6442 2.1957 9 1 4.7996 -1.1956 2.8422 10 6 3.6110 -2.9237 2.4454 11 7 2.8075 -3.5174 1.5900 12 14 4.1439 -3.8140 3.9988 13 1 5.3244 -4.6645 3.7015 14 1 4.5007 -2.8191 5.0418 15 1 3.0304 -4.6662 4.4877 16 6 1.9953 -0.7708 1.1337 17 1 -0.3633 0.4470 0.9253 18 1 -0.3633 0.5778 -0.8498 19 1 -0.3633 -1.0249 -0.0756 20 1 1.5634 1.9258 -0.8329 21 1 1.7326 1.8608 0.9377 22 1 3.7813 0.8569 -1.0907 23 1 3.9099 2.3512 -0.1310 24 1 3.8888 1.0353 1.9560 25 1 5.1997 0.4714 0.8905 26 1 3.4899 -2.6058 -0.2569 27 1 3.4637 -1.0522 -1.1252 28 1 4.9725 -1.6282 -0.3769 29 1 2.4920 -4.4177 1.7655 30 1 1.5635 -1.7716 1.1241 31 1 1.7325 -0.2709 2.0659 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261124433.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:30 Heat of formation + Delta-G solvation = -7.070547 kcal Electronic energy + Delta-G solvation = -11999.387922 eV Core-core repulsion = 10087.269543 eV Total energy + Delta-G solvation = -1912.118379 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.32858 -33.98209 -32.13763 -29.89815 -25.92733 -25.40519 -24.91843 -21.82569 -20.85823 -17.63235 -16.19709 -14.88672 -14.32170 -14.02797 -13.68367 -13.33265 -12.46038 -12.41747 -11.87125 -11.70040 -11.13382 -11.05723 -10.93422 -10.59348 -10.19574 -10.13749 -9.96943 -9.82181 -9.36002 -8.81963 -8.55624 -8.27761 -7.33040 -5.91150 -4.00976 3.31355 3.38937 3.42775 4.45339 4.87992 5.35262 5.69179 5.76672 5.87368 6.02563 6.11081 6.25060 6.40881 6.49481 6.58038 6.72071 6.82143 7.01296 7.06276 7.11757 7.37607 7.46484 7.65334 7.79724 8.05456 8.10634 8.11515 8.42319 8.60866 9.00882 9.63608 11.08700 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.051954 B = 0.014899 C = 0.013303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.804289 B = 1878.878795 C = 2104.340398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.542 5.542 3 C 0.061 3.939 4 C -0.117 4.117 5 C -0.107 4.107 6 C 0.074 3.926 7 C -0.122 4.122 8 C -0.507 4.507 9 H 0.054 0.946 10 C 0.065 3.935 11 N -0.883 5.883 12 Si 0.887 3.113 13 H -0.282 1.282 14 H -0.275 1.275 15 H -0.287 1.287 16 C 0.070 3.930 17 H 0.012 0.988 18 H 0.052 0.948 19 H 0.064 0.936 20 H 0.055 0.945 21 H 0.019 0.981 22 H 0.067 0.933 23 H 0.046 0.954 24 H 0.041 0.959 25 H 0.047 0.953 26 H 0.079 0.921 27 H 0.024 0.976 28 H 0.014 0.986 29 H 0.259 0.741 30 H 0.103 0.897 31 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.067 5.779 -2.153 6.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.267 5.267 3 C -0.067 4.067 4 C -0.154 4.154 5 C -0.144 4.144 6 C 0.074 3.926 7 C -0.180 4.180 8 C -0.546 4.546 9 H 0.072 0.928 10 C -0.136 4.136 11 N -0.522 5.522 12 Si 0.715 3.285 13 H -0.208 1.208 14 H -0.200 1.200 15 H -0.213 1.213 16 C -0.057 4.057 17 H 0.030 0.970 18 H 0.071 0.929 19 H 0.082 0.918 20 H 0.074 0.926 21 H 0.037 0.963 22 H 0.086 0.914 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.097 0.903 27 H 0.043 0.957 28 H 0.033 0.967 29 H 0.069 0.931 30 H 0.121 0.879 31 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -2.014 5.372 -2.598 6.298 hybrid contribution -0.057 -0.100 1.684 1.688 sum -2.071 5.271 -0.914 5.737 Atomic orbital electron populations 1.22255 0.89469 1.01455 0.98665 1.62058 1.05692 1.12296 1.46650 1.21976 0.96046 0.90284 0.98436 1.21631 0.94399 0.98642 1.00766 1.21683 0.98980 0.98102 0.95672 1.18092 0.90125 0.89764 0.94638 1.21721 0.97136 1.03002 0.96120 1.21179 1.23408 0.98949 1.11058 0.92767 1.24949 0.95231 0.97168 0.96287 1.69848 1.34316 1.13582 1.34472 0.86668 0.78172 0.79678 0.84006 1.20833 1.20025 1.21251 1.22380 0.98610 0.97974 0.86718 0.96985 0.92902 0.91766 0.92642 0.96316 0.91443 0.93552 0.94044 0.93431 0.90266 0.95723 0.96718 0.93123 0.87911 0.97893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.59 60.07 0.58 1.12 16 2 N -0.54 -11.39 4.16 -242.96 -1.01 -12.40 16 3 C 0.06 1.14 5.46 -3.83 -0.02 1.12 16 4 C -0.12 -2.19 5.74 -26.65 -0.15 -2.34 16 5 C -0.11 -2.33 4.73 -26.61 -0.13 -2.46 16 6 C 0.07 1.86 0.49 -155.58 -0.08 1.78 16 7 C -0.12 -3.05 7.84 37.16 0.29 -2.76 16 8 C -0.51 -13.89 8.01 -34.44 -0.28 -14.16 16 9 H 0.05 1.49 7.75 -52.49 -0.41 1.08 16 10 C 0.06 1.76 5.13 -17.82 -0.09 1.67 16 11 N -0.88 -24.55 9.40 55.43 0.52 -24.03 16 12 Si 0.89 21.17 29.54 -169.99 -5.02 16.14 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 C 0.07 1.70 3.92 -3.84 -0.02 1.68 16 17 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 18 H 0.05 0.81 8.09 -51.93 -0.42 0.39 16 19 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 20 H 0.06 0.91 8.09 -51.93 -0.42 0.49 16 21 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.07 1.29 6.63 -51.93 -0.34 0.95 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.08 2.17 6.02 -51.93 -0.31 1.86 16 27 H 0.02 0.57 6.06 -51.93 -0.31 0.26 16 28 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.10 2.76 6.11 -51.93 -0.32 2.45 16 31 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 LS Contribution 237.53 15.07 3.58 3.58 Total: -1.00 -27.61 237.53 -6.88 -34.49 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -5.05 Total: -3.43 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 0.11 Total: -14.36 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: -0.49 Total: -36.42 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -27.61 -6.88 -34.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261124433.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.419 kcal (2) G-P(sol) polarization free energy of solvation -27.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds