Wall clock time and date at job start Mon Mar 30 2020 01:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46851 * 110.99876 * 2 1 4 4 C 1.53034 * 109.52234 * 185.83795 * 3 2 1 5 5 C 1.53119 * 109.28064 * 300.82635 * 4 3 2 6 6 C 1.53114 * 109.16056 * 57.65465 * 5 4 3 7 7 C 1.53004 * 109.53856 * 62.30771 * 6 5 4 8 8 C 1.50705 * 109.50309 * 182.40328 * 6 5 4 9 9 H 1.08000 * 119.99906 * 356.92194 * 8 6 5 10 10 C 1.37881 * 120.00030 * 176.91656 * 8 6 5 11 11 N 1.31517 * 119.99875 * 6.44823 * 10 8 6 12 12 Si 1.86801 * 119.99851 * 186.44964 * 10 8 6 13 13 H 1.48505 * 109.46932 * 265.09646 * 12 10 8 14 14 H 1.48496 * 109.47129 * 25.09788 * 12 10 8 15 15 H 1.48504 * 109.47084 * 145.09820 * 12 10 8 16 16 C 1.46844 * 111.00216 * 124.21289 * 2 1 3 17 17 H 1.08992 * 109.47079 * 295.78673 * 1 2 3 18 18 H 1.08997 * 109.47125 * 55.78838 * 1 2 3 19 19 H 1.09004 * 109.47094 * 175.78395 * 1 2 3 20 20 H 1.08998 * 109.46615 * 305.85961 * 3 2 1 21 21 H 1.09005 * 109.45855 * 65.83764 * 3 2 1 22 22 H 1.09005 * 109.50189 * 60.76807 * 4 3 2 23 23 H 1.08997 * 109.50709 * 180.88085 * 4 3 2 24 24 H 1.08998 * 109.52556 * 297.74564 * 5 4 3 25 25 H 1.09000 * 109.52324 * 177.55934 * 5 4 3 26 26 H 1.09001 * 109.47107 * 177.98408 * 7 6 5 27 27 H 1.08996 * 109.46690 * 297.98469 * 7 6 5 28 28 H 1.08996 * 109.46967 * 57.98722 * 7 6 5 29 29 H 0.97003 * 119.99933 * 179.97438 * 11 10 8 30 30 H 1.09006 * 109.46146 * 54.14613 * 16 2 1 31 31 H 1.08995 * 109.45637 * 294.17528 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1188 0.5369 1.0143 6 6 3.5182 -0.8715 1.0207 7 6 3.8876 -1.5912 -0.2780 8 6 4.0599 -1.6442 2.1957 9 1 4.7996 -1.1956 2.8422 10 6 3.6110 -2.9237 2.4454 11 7 2.8075 -3.5174 1.5900 12 14 4.1439 -3.8140 3.9988 13 1 5.3244 -4.6645 3.7015 14 1 4.5007 -2.8191 5.0418 15 1 3.0304 -4.6662 4.4877 16 6 1.9953 -0.7708 1.1337 17 1 -0.3633 0.4470 0.9253 18 1 -0.3633 0.5778 -0.8498 19 1 -0.3633 -1.0249 -0.0756 20 1 1.5634 1.9258 -0.8329 21 1 1.7326 1.8608 0.9377 22 1 3.7813 0.8569 -1.0907 23 1 3.9099 2.3512 -0.1310 24 1 3.8888 1.0353 1.9560 25 1 5.1997 0.4714 0.8905 26 1 3.4899 -2.6058 -0.2569 27 1 3.4637 -1.0522 -1.1252 28 1 4.9725 -1.6282 -0.3769 29 1 2.4920 -4.4177 1.7655 30 1 1.5635 -1.7716 1.1241 31 1 1.7325 -0.2709 2.0659 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261124433.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:30 Heat of formation + Delta-G solvation = -23.713228 kcal Electronic energy + Delta-G solvation = -12000.109602 eV Core-core repulsion = 10087.269543 eV Total energy + Delta-G solvation = -1912.840059 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.05159 -35.81630 -33.93302 -31.71470 -27.52599 -27.38737 -26.84758 -23.49736 -22.55408 -19.45131 -18.16602 -16.82416 -16.04929 -15.65673 -15.33664 -15.05641 -14.27600 -14.25882 -13.48097 -13.31029 -12.95062 -12.88204 -12.60868 -12.47946 -12.06879 -12.03238 -11.73021 -11.61822 -11.21835 -10.67114 -10.47803 -10.32946 -8.98750 -7.97992 -6.15057 1.40682 1.43203 1.52424 2.45662 3.15817 3.40645 4.21215 4.23047 4.33731 4.57265 4.66416 4.67996 4.86268 4.91380 5.01784 5.02140 5.08253 5.22925 5.33084 5.37819 5.44870 5.51029 5.68143 5.72555 6.13755 6.24164 6.38726 6.52683 6.60090 6.94576 7.52172 8.99433 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.051954 B = 0.014899 C = 0.013303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.804289 B = 1878.878795 C = 2104.340398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.555 5.555 3 C 0.059 3.941 4 C -0.111 4.111 5 C -0.104 4.104 6 C 0.062 3.938 7 C -0.108 4.108 8 C -0.531 4.531 9 H 0.045 0.955 10 C 0.023 3.977 11 N -0.901 5.901 12 Si 0.944 3.056 13 H -0.279 1.279 14 H -0.273 1.273 15 H -0.283 1.283 16 C 0.086 3.914 17 H 0.016 0.984 18 H 0.085 0.915 19 H 0.055 0.945 20 H 0.088 0.912 21 H 0.019 0.981 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.035 0.965 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.010 0.990 29 H 0.258 0.742 30 H 0.072 0.928 31 H -0.016 1.016 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.237 6.987 -2.554 7.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.280 5.280 3 C -0.069 4.069 4 C -0.148 4.148 5 C -0.142 4.142 6 C 0.061 3.939 7 C -0.165 4.165 8 C -0.569 4.569 9 H 0.063 0.937 10 C -0.176 4.176 11 N -0.540 5.540 12 Si 0.770 3.230 13 H -0.205 1.205 14 H -0.198 1.198 15 H -0.209 1.209 16 C -0.042 4.042 17 H 0.034 0.966 18 H 0.103 0.897 19 H 0.074 0.926 20 H 0.107 0.893 21 H 0.037 0.963 22 H 0.083 0.917 23 H 0.098 0.902 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.029 0.971 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.002 0.998 Dipole moment (debyes) X Y Z Total from point charges -2.187 6.591 -3.006 7.567 hybrid contribution -0.017 -0.462 1.786 1.845 sum -2.204 6.129 -1.220 6.627 Atomic orbital electron populations 1.22314 0.87560 1.01675 1.00243 1.61995 1.07606 1.13700 1.44680 1.22100 0.95970 0.89024 0.99802 1.21606 0.94515 0.99896 0.98830 1.21601 0.98917 0.96681 0.97023 1.18184 0.90773 0.91390 0.93562 1.21541 0.96642 1.01506 0.96852 1.21498 1.23651 0.99709 1.12092 0.93674 1.25593 0.95391 0.97886 0.98754 1.69983 1.34802 1.13656 1.35572 0.85771 0.77834 0.78536 0.80836 1.20463 1.19805 1.20875 1.21985 0.98173 0.96774 0.87252 0.96592 0.89685 0.92643 0.89330 0.96309 0.91727 0.90171 0.94611 0.93590 0.93101 0.94405 0.97072 0.93206 0.91024 0.99777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.02 9.59 127.69 1.22 2.24 16 2 N -0.56 -22.37 4.16 -922.59 -3.84 -26.21 16 3 C 0.06 2.01 5.46 86.32 0.47 2.48 16 4 C -0.11 -3.83 5.74 30.65 0.18 -3.66 16 5 C -0.10 -4.44 4.73 30.67 0.15 -4.30 16 6 C 0.06 3.07 0.49 -52.87 -0.03 3.05 16 7 C -0.11 -5.38 7.84 71.98 0.56 -4.82 16 8 C -0.53 -29.41 8.01 25.60 0.21 -29.20 16 9 H 0.04 2.51 7.75 -2.91 -0.02 2.48 16 10 C 0.02 1.27 5.13 84.66 0.43 1.70 16 11 N -0.90 -50.91 9.40 21.45 0.20 -50.71 16 12 Si 0.94 43.74 29.54 68.60 2.03 45.77 16 13 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 14 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 15 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 16 C 0.09 4.19 3.92 86.33 0.34 4.53 16 17 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 18 H 0.08 2.31 8.09 -2.39 -0.02 2.29 16 19 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 20 H 0.09 2.48 8.09 -2.39 -0.02 2.46 16 21 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 22 H 0.06 2.28 6.63 -2.38 -0.02 2.27 16 23 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 24 H 0.04 1.52 8.14 -2.39 -0.02 1.51 16 25 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.05 2.82 6.02 -2.39 -0.01 2.80 16 27 H 0.04 1.73 6.06 -2.39 -0.01 1.72 16 28 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 30 H 0.07 3.94 6.11 -2.38 -0.01 3.92 16 31 H -0.02 -0.82 8.14 -2.39 -0.02 -0.84 16 Total: -1.00 -58.56 237.53 3.00 -55.56 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: 1.07 Total: 3.57 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: 3.53 Total: -27.98 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -3.63 Total: -76.92 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -58.56 3.00 -55.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261124433.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.844 kcal (2) G-P(sol) polarization free energy of solvation -58.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds