Wall clock time and date at job start Mon Mar 30 2020 01:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46771 * 2 1 4 4 C 1.50698 * 110.27394 * 302.21984 * 3 2 1 5 5 H 1.07994 * 119.99890 * 120.02843 * 4 3 2 6 6 C 1.37881 * 119.99969 * 300.02708 * 4 3 2 7 7 N 1.31511 * 119.99837 * 353.60666 * 6 4 3 8 8 Si 1.86801 * 119.99846 * 173.60232 * 6 4 3 9 9 H 1.48497 * 109.47087 * 180.02562 * 8 6 4 10 10 H 1.48502 * 109.47093 * 300.00408 * 8 6 4 11 11 H 1.48499 * 109.46827 * 60.00170 * 8 6 4 12 12 C 1.54595 * 110.38848 * 180.02562 * 3 2 1 13 13 C 1.54943 * 102.92139 * 219.08141 * 12 3 2 14 14 N 1.48533 * 103.22298 * 37.41804 * 13 12 3 15 15 C 1.46905 * 110.99828 * 200.27780 * 14 13 12 16 16 C 1.47903 * 105.81903 * 320.79096 * 14 13 12 17 17 H 1.08999 * 109.47125 * 295.55331 * 1 2 3 18 18 H 1.09003 * 109.46977 * 55.55611 * 1 2 3 19 19 H 1.08999 * 109.46575 * 175.55333 * 1 2 3 20 20 H 1.09004 * 109.47526 * 240.00047 * 2 1 3 21 21 H 1.08998 * 109.47399 * 119.99619 * 2 1 3 22 22 H 0.97005 * 119.99963 * 179.97438 * 7 6 4 23 23 H 1.09001 * 110.72792 * 337.44189 * 12 3 2 24 24 H 1.08994 * 110.72694 * 100.72866 * 12 3 2 25 25 H 1.08989 * 110.66791 * 278.98243 * 13 12 3 26 26 H 1.09004 * 110.81097 * 155.91249 * 13 12 3 27 27 H 1.09004 * 109.47117 * 177.38952 * 15 14 13 28 28 H 1.08993 * 109.46950 * 297.39484 * 15 14 13 29 29 H 1.09003 * 109.46594 * 57.39791 * 15 14 13 30 30 H 1.08997 * 109.91916 * 265.97752 * 16 14 13 31 31 H 1.09002 * 109.91566 * 144.68799 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5034 2.1861 -1.1959 5 1 0.8931 3.0659 -1.0555 6 6 1.7916 1.7431 -2.4694 7 7 2.6352 0.7495 -2.6447 8 14 0.9839 2.5542 -3.9456 9 1 1.4569 1.8983 -5.1911 10 1 -0.4908 2.4139 -3.8421 11 1 1.3432 3.9947 -3.9770 12 6 3.5857 1.4674 -0.0006 13 6 3.9137 2.6450 0.9515 14 7 2.8725 2.5306 2.0045 15 6 2.7089 3.8013 2.7234 16 6 1.6268 2.1555 1.3009 17 1 -0.3633 0.4433 0.9271 18 1 -0.3633 0.5813 -0.8475 19 1 -0.3632 -1.0246 -0.0797 20 1 1.8934 -0.5138 -0.8900 21 1 1.8934 -0.5138 0.8900 22 1 2.8377 0.4375 -3.5406 23 1 3.9867 0.5322 0.3901 24 1 3.9679 1.6635 -1.0024 25 1 3.8290 3.5975 0.4286 26 1 4.9091 2.5303 1.3807 27 1 1.9088 3.7033 3.4572 28 1 3.6394 4.0535 3.2318 29 1 2.4569 4.5899 2.0143 30 1 1.0489 3.0495 1.0669 31 1 1.0376 1.4815 1.9227 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261138689.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:45 Heat of formation + Delta-G solvation = -22.142552 kcal Electronic energy + Delta-G solvation = -11939.795513 eV Core-core repulsion = 10027.023563 eV Total energy + Delta-G solvation = -1912.771950 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.00890 -35.88983 -33.35896 -31.40192 -29.01099 -27.22334 -25.79911 -23.35564 -21.77639 -20.39134 -17.90882 -16.78670 -16.43910 -15.85176 -14.99114 -14.76790 -14.34580 -13.84237 -13.73636 -13.57297 -12.82495 -12.67978 -12.53550 -12.45837 -12.04477 -11.92863 -11.89814 -11.62161 -11.08620 -10.83493 -10.61706 -10.24897 -9.23816 -7.99815 -6.10351 1.41575 1.44028 1.49446 2.46301 3.25234 3.37577 4.19091 4.27972 4.45774 4.61185 4.64607 4.68256 4.77469 4.86610 4.96430 4.99406 5.04714 5.10754 5.27513 5.40031 5.51821 5.63543 5.74891 5.78030 5.97311 6.09215 6.20338 6.33836 6.55088 6.95208 7.54152 9.02116 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.041921 B = 0.015965 C = 0.014484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.760362 B = 1753.455241 C = 1932.663255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.098 4.098 3 C 0.058 3.942 4 C -0.510 4.510 5 H 0.041 0.959 6 C 0.029 3.971 7 N -0.901 5.901 8 Si 0.934 3.066 9 H -0.287 1.287 10 H -0.275 1.275 11 H -0.278 1.278 12 C -0.096 4.096 13 C 0.044 3.956 14 N -0.534 5.534 15 C 0.018 3.982 16 C 0.053 3.947 17 H 0.048 0.952 18 H 0.041 0.959 19 H 0.042 0.958 20 H 0.052 0.948 21 H 0.029 0.971 22 H 0.258 0.742 23 H 0.034 0.966 24 H 0.057 0.943 25 H 0.028 0.972 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.017 0.983 30 H 0.024 0.976 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.671 2.524 5.706 6.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.137 4.137 3 C 0.057 3.943 4 C -0.548 4.548 5 H 0.059 0.941 6 C -0.170 4.170 7 N -0.539 5.539 8 Si 0.761 3.239 9 H -0.212 1.212 10 H -0.200 1.200 11 H -0.204 1.204 12 C -0.134 4.134 13 C -0.084 4.084 14 N -0.258 5.258 15 C -0.130 4.130 16 C -0.075 4.075 17 H 0.067 0.933 18 H 0.060 0.940 19 H 0.061 0.939 20 H 0.071 0.929 21 H 0.047 0.953 22 H 0.067 0.933 23 H 0.052 0.948 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.036 0.964 30 H 0.043 0.957 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.454 2.039 5.963 6.318 hybrid contribution -0.572 1.003 -1.686 2.043 sum -1.026 3.042 4.277 5.348 Atomic orbital electron populations 1.21570 0.96500 0.99517 1.00740 1.21370 0.95427 0.97968 0.98899 1.18978 0.91796 0.92544 0.90946 1.21241 1.31103 1.11160 0.91301 0.94101 1.25434 0.95325 0.95723 1.00554 1.70031 1.33956 1.27951 1.22001 0.85995 0.79307 0.78671 0.79924 1.21248 1.20014 1.20392 1.22321 0.98434 0.95102 0.97573 1.23136 0.95567 0.97711 0.91956 1.64765 1.06396 1.30024 1.24645 1.22529 1.02802 0.89539 0.98180 1.22989 0.91239 0.98140 0.95117 0.93325 0.93991 0.93867 0.92913 0.95274 0.93311 0.94759 0.92406 0.95408 0.90164 0.90736 0.90236 0.96429 0.95715 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.25 9.46 71.98 0.68 -4.57 16 2 C -0.10 -4.60 4.51 30.60 0.14 -4.46 16 3 C 0.06 2.79 0.36 -52.05 -0.02 2.77 16 4 C -0.51 -26.83 6.61 25.60 0.17 -26.67 16 5 H 0.04 2.19 7.35 -2.91 -0.02 2.16 16 6 C 0.03 1.56 4.99 84.66 0.42 1.98 16 7 N -0.90 -49.58 10.04 21.45 0.22 -49.36 16 8 Si 0.93 42.76 29.54 68.60 2.03 44.79 16 9 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 C -0.10 -4.54 5.65 31.80 0.18 -4.36 16 13 C 0.04 1.78 6.56 86.65 0.57 2.35 16 14 N -0.53 -20.71 5.55 -909.15 -5.05 -25.76 16 15 C 0.02 0.56 9.40 127.69 1.20 1.76 16 16 C 0.05 2.24 5.58 86.44 0.48 2.73 16 17 H 0.05 1.83 6.86 -2.39 -0.02 1.81 16 18 H 0.04 1.90 7.04 -2.39 -0.02 1.89 16 19 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 20 H 0.05 2.76 6.46 -2.39 -0.02 2.74 16 21 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.26 13.75 8.31 -92.70 -0.77 12.98 16 23 H 0.03 1.60 7.87 -2.39 -0.02 1.59 16 24 H 0.06 3.06 6.38 -2.39 -0.02 3.05 16 25 H 0.03 1.16 7.96 -2.39 -0.02 1.14 16 26 H 0.08 2.87 8.14 -2.38 -0.02 2.85 16 27 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 28 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.02 0.56 8.00 -2.39 -0.02 0.54 16 30 H 0.02 1.07 6.98 -2.39 -0.02 1.06 16 31 H 0.07 2.66 6.58 -2.39 -0.02 2.64 16 Total: -1.00 -55.35 240.07 2.09 -53.25 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: 1.08 Total: 5.55 kcal Atomic # 6 Polarization: -32.29 SS G_CDS: 3.82 Total: -28.47 kcal Atomic # 7 Polarization: -70.29 SS G_CDS: -4.83 Total: -75.12 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -55.35 2.09 -53.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138689.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.112 kcal (2) G-P(sol) polarization free energy of solvation -55.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds