Wall clock time and date at job start Mon Mar 30 2020 01:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46906 * 109.46715 * 2 1 4 4 C 1.52997 * 109.46975 * 240.00067 * 2 1 3 5 5 C 1.53006 * 109.47164 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46626 * 59.99702 * 5 4 2 7 7 C 1.50706 * 109.46957 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99816 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00340 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99773 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00296 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47086 * 59.99480 * 11 9 7 13 13 H 1.48494 * 109.47288 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46879 * 299.99424 * 11 9 7 15 15 C 1.52997 * 109.47592 * 300.00035 * 6 5 4 16 16 C 1.52996 * 109.47165 * 60.00300 * 15 6 5 17 17 H 1.09004 * 109.47368 * 180.02562 * 1 2 3 18 18 H 1.09004 * 109.47108 * 300.00049 * 1 2 3 19 19 H 1.09001 * 109.47367 * 59.99747 * 1 2 3 20 20 H 1.00892 * 111.00581 * 60.00270 * 3 2 1 21 21 H 1.00909 * 110.99269 * 183.95692 * 3 2 1 22 22 H 1.09001 * 109.46922 * 59.99912 * 4 2 1 23 23 H 1.09000 * 109.47140 * 299.99612 * 4 2 1 24 24 H 1.08993 * 109.46955 * 180.02562 * 5 4 2 25 25 H 1.09000 * 109.47050 * 300.00004 * 5 4 2 26 26 H 1.09000 * 109.47160 * 60.00369 * 6 5 4 27 27 H 0.97000 * 120.00540 * 180.02562 * 10 9 7 28 28 H 1.09000 * 109.47140 * 300.00346 * 15 6 5 29 29 H 1.09001 * 109.47375 * 180.02562 * 15 6 5 30 30 H 1.08992 * 109.47534 * 180.02562 * 16 15 6 31 31 H 1.08996 * 109.47134 * 59.99508 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5700 -0.7207 -1.2496 6 6 4.0804 -1.4415 -0.0003 7 6 5.5875 -1.4405 -0.0003 8 1 6.1271 -0.9722 -0.8101 9 6 6.2773 -2.0375 1.0335 10 7 5.6201 -2.6073 2.0199 11 14 8.1453 -2.0355 1.0339 12 1 8.6389 -0.6349 1.0348 13 1 8.6408 -2.7353 2.2463 14 1 8.6412 -2.7344 -0.1789 15 6 3.5704 -0.7203 1.2489 16 6 2.0405 -0.7209 1.2493 17 1 -0.3634 -1.0277 0.0005 18 1 -0.3633 0.5139 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 1.6961 1.8830 0.8157 21 1 3.0262 1.4127 -0.0650 22 1 1.6765 -0.2074 -2.1392 23 1 1.6766 -1.7489 -1.2492 24 1 3.9332 -1.2341 -2.1398 25 1 3.9329 0.3071 -1.2498 26 1 3.7174 -2.4693 -0.0001 27 1 6.1053 -3.0270 2.7474 28 1 3.9334 0.3075 1.2487 29 1 3.9345 -1.2336 2.1389 30 1 1.6771 -0.2067 2.1390 31 1 1.6775 -1.7486 1.2494 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261172923.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:37 Heat of formation + Delta-G solvation = -30.258547 kcal Electronic energy + Delta-G solvation = -11784.604512 eV Core-core repulsion = 9871.480627 eV Total energy + Delta-G solvation = -1913.123886 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.63592 -33.85164 -31.35550 -29.70040 -28.99489 -26.65908 -23.54268 -21.61382 -19.89080 -17.97983 -16.30048 -15.48387 -14.61500 -14.27180 -13.54164 -13.16068 -12.67004 -12.54598 -11.89765 -11.64793 -11.33065 -11.24845 -11.02106 -10.72675 -10.63231 -10.17054 -10.03469 -9.85926 -9.33009 -8.93196 -8.62018 -8.27754 -8.04402 -5.96219 -4.02678 3.32288 3.36959 3.39737 4.44990 5.07791 5.32575 5.39211 5.53630 5.72907 6.00723 6.08112 6.25300 6.31353 6.34259 6.45936 6.57266 6.65709 6.77890 6.81016 6.99601 7.16897 7.24268 7.53370 7.74475 7.78438 7.98280 8.06154 8.18334 8.49584 9.01854 9.62016 11.09071 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.073485 B = 0.011626 C = 0.011101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.940436 B = 2407.873975 C = 2521.775920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.116 3.884 3 N -0.842 5.842 4 C -0.103 4.103 5 C -0.111 4.111 6 C 0.048 3.952 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.060 3.940 10 N -0.892 5.892 11 Si 0.889 3.111 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.278 1.278 15 C -0.110 4.110 16 C -0.145 4.145 17 H 0.053 0.947 18 H 0.046 0.954 19 H 0.054 0.946 20 H 0.328 0.672 21 H 0.348 0.652 22 H 0.051 0.949 23 H 0.055 0.945 24 H 0.045 0.955 25 H 0.050 0.950 26 H 0.023 0.977 27 H 0.259 0.741 28 H 0.030 0.970 29 H 0.090 0.910 30 H 0.039 0.961 31 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.486 3.915 -1.884 7.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.023 3.977 3 N -0.373 5.373 4 C -0.140 4.140 5 C -0.148 4.148 6 C 0.030 3.970 7 C -0.551 4.551 8 H 0.072 0.928 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.717 3.283 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.148 4.148 16 C -0.184 4.184 17 H 0.072 0.928 18 H 0.065 0.935 19 H 0.074 0.926 20 H 0.139 0.861 21 H 0.164 0.836 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.041 0.959 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.109 0.891 30 H 0.058 0.942 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.862 3.892 -2.402 8.247 hybrid contribution 1.536 -0.337 1.056 1.894 sum -5.326 3.556 -1.347 6.544 Atomic orbital electron populations 1.21809 0.95383 1.00970 1.01163 1.20758 0.93347 0.88182 0.95399 1.59125 1.17505 1.14131 1.46564 1.21561 0.97734 0.98788 0.95965 1.21643 0.92744 1.00282 1.00161 1.18652 0.94647 0.94488 0.89211 1.21227 0.91516 1.35715 1.06668 0.92847 1.24976 0.98107 0.95302 0.95661 1.69869 1.35055 1.37475 1.10672 0.86707 0.86142 0.78135 0.77294 1.20352 1.21382 1.20335 1.21617 0.90218 0.99119 1.03842 1.22385 0.99790 1.00050 0.96172 0.92773 0.93519 0.92647 0.86061 0.83647 0.93038 0.92610 0.93587 0.93164 0.95865 0.93080 0.95154 0.89123 0.94248 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.77 37.16 0.33 -1.67 16 2 C 0.12 2.00 0.94 -131.60 -0.12 1.87 16 3 N -0.84 -13.93 8.74 0.74 0.01 -13.92 16 4 C -0.10 -1.88 4.92 -26.73 -0.13 -2.01 16 5 C -0.11 -2.34 4.88 -26.73 -0.13 -2.47 16 6 C 0.05 1.20 2.10 -91.77 -0.19 1.01 16 7 C -0.51 -14.13 8.56 -34.44 -0.29 -14.43 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 10 N -0.89 -25.58 11.32 55.43 0.63 -24.95 16 11 Si 0.89 21.41 29.54 -169.99 -5.02 16.38 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 C -0.11 -2.56 4.72 -26.73 -0.13 -2.68 16 16 C -0.14 -2.81 4.89 -26.73 -0.13 -2.94 16 17 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 18 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 19 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 20 H 0.33 4.89 9.00 -39.30 -0.35 4.54 16 21 H 0.35 6.21 5.44 -39.29 -0.21 5.99 16 22 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.05 1.05 6.57 -51.93 -0.34 0.71 16 26 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.03 0.69 6.76 -51.93 -0.35 0.34 16 29 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 239.17 15.07 3.60 3.60 Total: -1.00 -27.74 239.17 -6.60 -34.34 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.92 Total: 6.26 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -0.90 Total: -21.72 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.63 Total: -38.87 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -27.74 -6.60 -34.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261172923.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.080 kcal (2) G-P(sol) polarization free energy of solvation -27.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds