Wall clock time and date at job start Mon Mar 30 2020 01:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46906 * 109.46715 * 2 1 4 4 C 1.52997 * 109.46975 * 240.00067 * 2 1 3 5 5 C 1.53006 * 109.47164 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46626 * 59.99702 * 5 4 2 7 7 C 1.50706 * 109.46957 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99816 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00340 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99773 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00296 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47086 * 59.99480 * 11 9 7 13 13 H 1.48494 * 109.47288 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46879 * 299.99424 * 11 9 7 15 15 C 1.52997 * 109.47592 * 300.00035 * 6 5 4 16 16 C 1.52996 * 109.47165 * 60.00300 * 15 6 5 17 17 H 1.09004 * 109.47368 * 180.02562 * 1 2 3 18 18 H 1.09004 * 109.47108 * 300.00049 * 1 2 3 19 19 H 1.09001 * 109.47367 * 59.99747 * 1 2 3 20 20 H 1.00892 * 111.00581 * 60.00270 * 3 2 1 21 21 H 1.00909 * 110.99269 * 183.95692 * 3 2 1 22 22 H 1.09001 * 109.46922 * 59.99912 * 4 2 1 23 23 H 1.09000 * 109.47140 * 299.99612 * 4 2 1 24 24 H 1.08993 * 109.46955 * 180.02562 * 5 4 2 25 25 H 1.09000 * 109.47050 * 300.00004 * 5 4 2 26 26 H 1.09000 * 109.47160 * 60.00369 * 6 5 4 27 27 H 0.97000 * 120.00540 * 180.02562 * 10 9 7 28 28 H 1.09000 * 109.47140 * 300.00346 * 15 6 5 29 29 H 1.09001 * 109.47375 * 180.02562 * 15 6 5 30 30 H 1.08992 * 109.47534 * 180.02562 * 16 15 6 31 31 H 1.08996 * 109.47134 * 59.99508 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5700 -0.7207 -1.2496 6 6 4.0804 -1.4415 -0.0003 7 6 5.5875 -1.4405 -0.0003 8 1 6.1271 -0.9722 -0.8101 9 6 6.2773 -2.0375 1.0335 10 7 5.6201 -2.6073 2.0199 11 14 8.1453 -2.0355 1.0339 12 1 8.6389 -0.6349 1.0348 13 1 8.6408 -2.7353 2.2463 14 1 8.6412 -2.7344 -0.1789 15 6 3.5704 -0.7203 1.2489 16 6 2.0405 -0.7209 1.2493 17 1 -0.3634 -1.0277 0.0005 18 1 -0.3633 0.5139 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 1.6961 1.8830 0.8157 21 1 3.0262 1.4127 -0.0650 22 1 1.6765 -0.2074 -2.1392 23 1 1.6766 -1.7489 -1.2492 24 1 3.9332 -1.2341 -2.1398 25 1 3.9329 0.3071 -1.2498 26 1 3.7174 -2.4693 -0.0001 27 1 6.1053 -3.0270 2.7474 28 1 3.9334 0.3075 1.2487 29 1 3.9345 -1.2336 2.1389 30 1 1.6771 -0.2067 2.1390 31 1 1.6775 -1.7486 1.2494 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261172923.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:37 Heat of formation + Delta-G solvation = -47.742887 kcal Electronic energy + Delta-G solvation = -11785.362690 eV Core-core repulsion = 9871.480627 eV Total energy + Delta-G solvation = -1913.882064 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.20860 -35.71541 -33.23104 -31.38274 -30.32802 -28.40467 -25.36260 -23.29892 -21.61892 -19.55421 -18.40427 -16.93717 -16.53507 -15.80424 -15.11124 -14.85870 -14.34102 -14.19285 -13.63487 -13.13782 -12.92105 -12.80720 -12.72598 -12.46587 -12.40441 -11.85400 -11.75823 -11.65332 -11.17966 -10.74918 -10.50446 -10.35004 -9.44336 -8.08159 -6.22702 1.40079 1.40916 1.48636 2.42420 3.17644 3.73697 3.97822 4.12173 4.21987 4.54042 4.59679 4.79262 4.84450 4.88706 4.97903 5.02219 5.15162 5.22698 5.28095 5.33207 5.45500 5.49945 5.63551 5.69851 6.02435 6.19664 6.38445 6.42657 6.71892 6.90410 7.45539 8.95073 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.073485 B = 0.011626 C = 0.011101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.940436 B = 2407.873975 C = 2521.775920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.119 3.881 3 N -0.837 5.837 4 C -0.099 4.099 5 C -0.103 4.103 6 C 0.046 3.954 7 C -0.535 4.535 8 H 0.050 0.950 9 C 0.011 3.989 10 N -0.918 5.918 11 Si 0.951 3.049 12 H -0.271 1.271 13 H -0.285 1.285 14 H -0.273 1.273 15 C -0.101 4.101 16 C -0.137 4.137 17 H 0.060 0.940 18 H 0.059 0.941 19 H 0.065 0.935 20 H 0.340 0.660 21 H 0.339 0.661 22 H 0.070 0.930 23 H 0.054 0.946 24 H 0.040 0.960 25 H 0.053 0.947 26 H -0.013 1.013 27 H 0.259 0.741 28 H 0.030 0.970 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.123 4.932 -2.342 8.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.026 3.974 3 N -0.368 5.368 4 C -0.137 4.137 5 C -0.141 4.141 6 C 0.028 3.972 7 C -0.573 4.573 8 H 0.069 0.931 9 C -0.187 4.187 10 N -0.557 5.557 11 Si 0.777 3.223 12 H -0.196 1.196 13 H -0.210 1.210 14 H -0.198 1.198 15 C -0.139 4.139 16 C -0.177 4.177 17 H 0.079 0.921 18 H 0.078 0.922 19 H 0.084 0.916 20 H 0.152 0.848 21 H 0.154 0.846 22 H 0.089 0.911 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.005 0.995 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.514 4.921 -2.865 9.428 hybrid contribution 1.747 -0.669 1.199 2.222 sum -5.767 4.252 -1.666 7.356 Atomic orbital electron populations 1.21748 0.92740 1.01856 1.02389 1.20745 0.95278 0.88015 0.93343 1.59133 1.16834 1.13550 1.47235 1.21538 0.95322 0.99348 0.97494 1.21506 0.95040 0.99633 0.97893 1.18620 0.93547 0.93183 0.91891 1.21624 0.93261 1.35808 1.06655 0.93132 1.25745 1.02584 0.95019 0.95350 1.70020 1.36603 1.37999 1.11104 0.85716 0.80805 0.78401 0.77367 1.19567 1.21044 1.19806 1.21392 0.93136 0.98138 1.01274 1.22314 0.96732 1.00208 0.98429 0.92137 0.92179 0.91571 0.84760 0.84593 0.91118 0.92691 0.94080 0.92866 0.99483 0.93183 0.95099 0.92825 0.92666 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 8.77 71.98 0.63 -2.73 16 2 C 0.12 3.83 0.94 3.52 0.00 3.83 16 3 N -0.84 -25.52 8.74 -151.56 -1.32 -26.85 16 4 C -0.10 -3.45 4.92 30.60 0.15 -3.30 16 5 C -0.10 -4.30 4.88 30.60 0.15 -4.15 16 6 C 0.05 2.33 2.10 -11.54 -0.02 2.30 16 7 C -0.54 -29.93 8.56 25.60 0.22 -29.72 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 9 C 0.01 0.64 5.30 84.65 0.45 1.08 16 10 N -0.92 -53.79 11.32 21.45 0.24 -53.55 16 11 Si 0.95 44.13 29.54 68.60 2.03 46.16 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 13 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 14 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 15 C -0.10 -4.75 4.72 30.59 0.14 -4.61 16 16 C -0.14 -5.19 4.89 30.59 0.15 -5.04 16 17 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 18 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 19 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 20 H 0.34 9.13 9.00 -89.70 -0.81 8.33 16 21 H 0.34 11.50 5.44 -89.69 -0.49 11.01 16 22 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 23 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 24 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.05 2.17 6.57 -2.39 -0.02 2.16 16 26 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 27 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 28 H 0.03 1.40 6.76 -2.39 -0.02 1.39 16 29 H 0.05 2.92 6.07 -2.39 -0.01 2.90 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.04 1.79 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -59.15 239.17 2.63 -56.52 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -0.19 Total: 20.04 kcal Atomic # 6 Polarization: -44.19 SS G_CDS: 1.87 Total: -42.32 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -1.08 Total: -80.39 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -59.15 2.63 -56.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261172923.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.775 kcal (2) G-P(sol) polarization free energy of solvation -59.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds