Wall clock time and date at job start Mon Mar 30 2020 02:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47302 * 2 1 4 4 C 1.50701 * 109.47005 * 119.99996 * 2 1 3 5 5 H 1.08000 * 120.00036 * 114.68733 * 4 2 1 6 6 C 1.37877 * 119.99822 * 294.68456 * 4 2 1 7 7 N 1.31519 * 119.99886 * 207.52325 * 6 4 2 8 8 Si 1.86798 * 120.00281 * 27.52195 * 6 4 2 9 9 H 1.48501 * 109.47114 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.46993 * 60.00098 * 8 6 4 11 11 H 1.48505 * 109.46938 * 300.00019 * 8 6 4 12 12 C 1.53004 * 109.47523 * 239.99660 * 2 1 3 13 13 H 1.08991 * 110.87911 * 181.94475 * 12 2 1 14 14 C 1.55150 * 110.98696 * 58.05851 * 12 2 1 15 15 C 1.54318 * 103.01633 * 206.25827 * 14 12 2 16 16 N 1.47439 * 107.23456 * 22.28481 * 15 14 12 17 17 C 1.47841 * 108.56916 * 0.98600 * 16 15 14 18 18 H 1.08996 * 109.47345 * 308.10656 * 1 2 3 19 19 H 1.09002 * 109.47011 * 68.10610 * 1 2 3 20 20 H 1.09002 * 109.47031 * 188.10677 * 1 2 3 21 21 H 1.08999 * 109.47388 * 186.60596 * 3 2 1 22 22 H 1.08998 * 109.47160 * 306.60766 * 3 2 1 23 23 H 1.08997 * 109.47311 * 66.60884 * 3 2 1 24 24 H 0.97002 * 119.99752 * 354.97188 * 7 6 4 25 25 H 1.09004 * 110.70499 * 324.64289 * 14 12 2 26 26 H 1.08997 * 110.70105 * 87.86990 * 14 12 2 27 27 H 1.09004 * 109.88299 * 262.87279 * 15 14 12 28 28 H 1.09001 * 109.88211 * 141.69334 * 15 14 12 29 29 H 1.00898 * 111.00080 * 123.26036 * 16 15 14 30 30 H 1.08997 * 110.37695 * 217.07129 * 17 16 15 31 31 H 1.09010 * 110.37019 * 94.73312 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5806 -1.6358 1.1337 6 6 1.7919 -0.1789 2.4798 7 7 2.6186 -0.4299 3.4714 8 14 0.2921 0.8978 2.7639 9 1 0.2616 1.3399 4.1813 10 1 -0.9380 0.1231 2.4610 11 1 0.3603 2.0859 1.8756 12 6 2.0401 -0.7213 -1.2492 13 1 3.1291 -0.7647 -1.2552 14 6 1.5028 -0.0465 -2.5388 15 6 1.5109 -1.2001 -3.5639 16 7 1.4790 -2.4619 -2.8019 17 6 1.4276 -2.1398 -1.3599 18 1 -0.3634 0.6342 0.8086 19 1 -0.3633 0.3832 -0.9536 20 1 -0.3633 -1.0174 0.1449 21 1 3.1236 1.4447 -0.1182 22 1 1.5834 1.9893 -0.8249 23 1 1.7765 1.9210 0.9432 24 1 3.3561 -1.0469 3.3435 25 1 0.4899 0.3259 -2.3856 26 1 2.1660 0.7575 -2.8580 27 1 2.4177 -1.1537 -4.1670 28 1 0.6324 -1.1319 -4.2055 29 1 0.6900 -3.0289 -3.0741 30 1 2.0208 -2.8549 -0.7899 31 1 0.3957 -2.1361 -1.0084 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261243909.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:15 Heat of formation + Delta-G solvation = 1.994170 kcal Electronic energy + Delta-G solvation = -11938.866125 eV Core-core repulsion = 10027.140822 eV Total energy + Delta-G solvation = -1911.725303 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.67885 -34.95213 -31.76819 -28.98130 -27.78923 -26.29748 -24.39277 -21.32651 -20.68799 -18.33138 -16.74100 -15.71455 -15.28651 -14.40090 -13.27173 -13.12021 -13.05060 -12.49461 -12.05552 -11.92962 -11.75627 -11.22436 -11.08484 -10.56278 -10.35401 -10.14209 -9.91193 -9.83967 -9.51198 -8.93404 -8.73556 -7.99305 -7.95495 -6.44116 -3.97793 3.37995 3.43382 3.65383 4.50474 4.72888 5.20451 5.26813 5.38739 5.53394 5.87502 5.91262 6.14385 6.22673 6.25981 6.35834 6.44220 6.52965 6.63065 6.78618 6.79636 6.84362 6.99757 7.03047 7.28910 7.44745 7.62919 7.76466 8.30421 8.42805 8.97805 9.66929 10.94387 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.058413 B = 0.014624 C = 0.013748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.229315 B = 1914.241292 C = 2036.184818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 C -0.140 4.140 4 C -0.601 4.601 5 H 0.057 0.943 6 C 0.035 3.965 7 N -0.898 5.898 8 Si 1.055 2.945 9 H -0.301 1.301 10 H -0.289 1.289 11 H -0.276 1.276 12 C -0.063 4.063 13 H 0.069 0.931 14 C -0.149 4.149 15 C 0.048 3.952 16 N -0.693 5.693 17 C 0.055 3.945 18 H 0.037 0.963 19 H 0.031 0.969 20 H 0.051 0.949 21 H 0.041 0.959 22 H 0.022 0.978 23 H 0.053 0.947 24 H 0.269 0.731 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.040 0.960 29 H 0.328 0.672 30 H 0.073 0.927 31 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.420 0.898 -9.946 10.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.051 3.949 3 C -0.198 4.198 4 C -0.638 4.638 5 H 0.075 0.925 6 C -0.171 4.171 7 N -0.531 5.531 8 Si 0.889 3.111 9 H -0.229 1.229 10 H -0.217 1.217 11 H -0.204 1.204 12 C -0.082 4.082 13 H 0.087 0.913 14 C -0.187 4.187 15 C -0.082 4.082 16 N -0.321 5.321 17 C -0.073 4.073 18 H 0.056 0.944 19 H 0.050 0.950 20 H 0.070 0.930 21 H 0.060 0.940 22 H 0.041 0.959 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.059 0.941 29 H 0.143 0.857 30 H 0.092 0.908 31 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.456 1.687 -8.825 10.029 hybrid contribution -0.184 -0.678 -1.073 1.282 sum -4.640 1.009 -9.898 10.978 Atomic orbital electron populations 1.22511 0.99804 1.00372 0.98322 1.18305 0.90664 0.92403 0.93576 1.22204 0.99968 0.97999 0.99599 1.21775 1.39945 1.11303 0.90750 0.92502 1.25681 0.99809 0.98612 0.92973 1.70873 1.13727 1.31507 1.36980 0.84139 0.76210 0.76523 0.74238 1.22877 1.21705 1.20417 1.22137 0.99428 0.93115 0.93534 0.91280 1.23038 1.01675 0.97623 0.96380 1.22553 1.00046 0.89475 0.96093 1.61920 1.47579 1.17000 1.05622 1.22890 1.00085 0.97662 0.86658 0.94444 0.94974 0.93007 0.93968 0.95913 0.92852 0.92117 0.91226 0.91707 0.91669 0.94112 0.85719 0.90824 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 6.81 37.16 0.25 -3.03 16 2 C 0.05 1.19 0.33 -155.66 -0.05 1.14 16 3 C -0.14 -3.12 7.83 37.16 0.29 -2.83 16 4 C -0.60 -16.43 8.02 -34.44 -0.28 -16.70 16 5 H 0.06 1.68 7.69 -52.49 -0.40 1.28 16 6 C 0.04 1.01 5.09 -17.82 -0.09 0.92 16 7 N -0.90 -27.41 13.70 55.43 0.76 -26.65 16 8 Si 1.06 25.82 23.33 -169.99 -3.97 21.85 16 9 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 10 H -0.29 -6.72 6.77 56.52 0.38 -6.34 16 11 H -0.28 -6.27 5.58 56.52 0.32 -5.95 16 12 C -0.06 -1.28 2.34 -88.48 -0.21 -1.49 16 13 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 14 C -0.15 -2.51 5.38 -24.90 -0.13 -2.64 16 15 C 0.05 0.72 7.58 -2.84 -0.02 0.70 16 16 N -0.69 -11.43 7.39 -110.79 -0.82 -12.24 16 17 C 0.06 1.06 6.38 -2.30 -0.01 1.04 16 18 H 0.04 0.82 2.97 -51.93 -0.15 0.67 16 19 H 0.03 0.60 5.78 -51.93 -0.30 0.30 16 20 H 0.05 1.10 6.45 -51.93 -0.34 0.77 16 21 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.02 0.43 7.59 -51.93 -0.39 0.04 16 23 H 0.05 1.25 4.29 -51.93 -0.22 1.03 16 24 H 0.27 8.16 8.73 -40.82 -0.36 7.81 16 25 H 0.07 1.16 5.69 -51.93 -0.30 0.86 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.33 4.66 8.91 -39.29 -0.35 4.31 16 30 H 0.07 1.53 7.97 -51.93 -0.41 1.12 16 31 H 0.05 0.92 5.77 -51.92 -0.30 0.62 16 LS Contribution 226.17 15.07 3.41 3.41 Total: -1.00 -28.87 226.17 -5.41 -34.27 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -4.54 Total: 2.24 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: -0.25 Total: -22.89 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: -0.06 Total: -38.89 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -3.97 Total: 21.85 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -28.87 -5.41 -34.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261243909.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.268 kcal (2) G-P(sol) polarization free energy of solvation -28.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds