Wall clock time and date at job start Mon Mar 30 2020 02:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47302 * 2 1 4 4 C 1.50701 * 109.47005 * 119.99996 * 2 1 3 5 5 H 1.08000 * 120.00036 * 114.68733 * 4 2 1 6 6 C 1.37877 * 119.99822 * 294.68456 * 4 2 1 7 7 N 1.31519 * 119.99886 * 207.52325 * 6 4 2 8 8 Si 1.86798 * 120.00281 * 27.52195 * 6 4 2 9 9 H 1.48501 * 109.47114 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.46993 * 60.00098 * 8 6 4 11 11 H 1.48505 * 109.46938 * 300.00019 * 8 6 4 12 12 C 1.53004 * 109.47523 * 239.99660 * 2 1 3 13 13 H 1.08991 * 110.87911 * 181.94475 * 12 2 1 14 14 C 1.55150 * 110.98696 * 58.05851 * 12 2 1 15 15 C 1.54318 * 103.01633 * 206.25827 * 14 12 2 16 16 N 1.47439 * 107.23456 * 22.28481 * 15 14 12 17 17 C 1.47841 * 108.56916 * 0.98600 * 16 15 14 18 18 H 1.08996 * 109.47345 * 308.10656 * 1 2 3 19 19 H 1.09002 * 109.47011 * 68.10610 * 1 2 3 20 20 H 1.09002 * 109.47031 * 188.10677 * 1 2 3 21 21 H 1.08999 * 109.47388 * 186.60596 * 3 2 1 22 22 H 1.08998 * 109.47160 * 306.60766 * 3 2 1 23 23 H 1.08997 * 109.47311 * 66.60884 * 3 2 1 24 24 H 0.97002 * 119.99752 * 354.97188 * 7 6 4 25 25 H 1.09004 * 110.70499 * 324.64289 * 14 12 2 26 26 H 1.08997 * 110.70105 * 87.86990 * 14 12 2 27 27 H 1.09004 * 109.88299 * 262.87279 * 15 14 12 28 28 H 1.09001 * 109.88211 * 141.69334 * 15 14 12 29 29 H 1.00898 * 111.00080 * 123.26036 * 16 15 14 30 30 H 1.08997 * 110.37695 * 217.07129 * 17 16 15 31 31 H 1.09010 * 110.37019 * 94.73312 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5806 -1.6358 1.1337 6 6 1.7919 -0.1789 2.4798 7 7 2.6186 -0.4299 3.4714 8 14 0.2921 0.8978 2.7639 9 1 0.2616 1.3399 4.1813 10 1 -0.9380 0.1231 2.4610 11 1 0.3603 2.0859 1.8756 12 6 2.0401 -0.7213 -1.2492 13 1 3.1291 -0.7647 -1.2552 14 6 1.5028 -0.0465 -2.5388 15 6 1.5109 -1.2001 -3.5639 16 7 1.4790 -2.4619 -2.8019 17 6 1.4276 -2.1398 -1.3599 18 1 -0.3634 0.6342 0.8086 19 1 -0.3633 0.3832 -0.9536 20 1 -0.3633 -1.0174 0.1449 21 1 3.1236 1.4447 -0.1182 22 1 1.5834 1.9893 -0.8249 23 1 1.7765 1.9210 0.9432 24 1 3.3561 -1.0469 3.3435 25 1 0.4899 0.3259 -2.3856 26 1 2.1660 0.7575 -2.8580 27 1 2.4177 -1.1537 -4.1670 28 1 0.6324 -1.1319 -4.2055 29 1 0.6900 -3.0289 -3.0741 30 1 2.0208 -2.8549 -0.7899 31 1 0.3957 -2.1361 -1.0084 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261243909.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:14 Heat of formation + Delta-G solvation = -19.517680 kcal Electronic energy + Delta-G solvation = -11939.798949 eV Core-core repulsion = 10027.140822 eV Total energy + Delta-G solvation = -1912.658127 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.22645 -36.65003 -33.85424 -30.38845 -29.32200 -27.99963 -26.46085 -23.03323 -22.04009 -20.16142 -18.67002 -17.28049 -16.79182 -16.08210 -14.99327 -14.81884 -14.65023 -14.20483 -13.84598 -13.58209 -13.48714 -12.77424 -12.53984 -12.24943 -11.93190 -11.86462 -11.71221 -11.67493 -11.16165 -10.85535 -10.56887 -10.11801 -9.31280 -8.69645 -6.23622 1.42926 1.50539 1.72544 2.48911 3.06533 3.40011 3.89719 3.94223 4.17472 4.37537 4.46839 4.58188 4.64887 4.82865 4.87312 4.89151 4.95451 5.05062 5.06801 5.15452 5.25494 5.30759 5.46314 5.62197 5.89236 5.96180 6.09184 6.29728 6.57561 6.68788 7.49685 8.66720 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.058413 B = 0.014624 C = 0.013748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.229315 B = 1914.241292 C = 2036.184818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.045 3.955 3 C -0.139 4.139 4 C -0.596 4.596 5 H 0.014 0.986 6 C -0.016 4.016 7 N -0.936 5.936 8 Si 1.089 2.911 9 H -0.313 1.313 10 H -0.267 1.267 11 H -0.241 1.241 12 C -0.069 4.069 13 H 0.040 0.960 14 C -0.140 4.140 15 C 0.049 3.951 16 N -0.697 5.697 17 C 0.062 3.938 18 H 0.034 0.966 19 H 0.068 0.932 20 H 0.046 0.954 21 H 0.029 0.971 22 H 0.059 0.941 23 H 0.039 0.961 24 H 0.251 0.749 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.344 0.656 30 H 0.041 0.959 31 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.538 2.243 -12.390 14.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.044 3.956 3 C -0.196 4.196 4 C -0.634 4.634 5 H 0.033 0.967 6 C -0.215 4.215 7 N -0.572 5.572 8 Si 0.916 3.084 9 H -0.242 1.242 10 H -0.193 1.193 11 H -0.167 1.167 12 C -0.088 4.088 13 H 0.059 0.941 14 C -0.178 4.178 15 C -0.080 4.080 16 N -0.327 5.327 17 C -0.067 4.067 18 H 0.053 0.947 19 H 0.087 0.913 20 H 0.065 0.935 21 H 0.049 0.951 22 H 0.078 0.922 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.161 0.839 30 H 0.060 0.940 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.577 3.019 -11.318 13.433 hybrid contribution 0.570 -1.197 -0.362 1.374 sum -6.007 1.823 -11.680 13.260 Atomic orbital electron populations 1.22414 0.97701 1.00427 1.00272 1.18318 0.92313 0.92597 0.92398 1.22142 0.99586 0.97561 1.00335 1.22024 1.38413 1.09812 0.93106 0.96737 1.27029 1.01491 1.00066 0.92925 1.71013 1.14726 1.33215 1.38208 0.83763 0.73714 0.76717 0.74210 1.24177 1.19290 1.16669 1.22018 0.97872 0.94239 0.94684 0.94135 1.22994 1.02177 0.98316 0.94267 1.22619 1.01927 0.87704 0.95722 1.61789 1.48796 1.18264 1.03893 1.22657 0.99344 0.96339 0.88338 0.94706 0.91299 0.93477 0.95136 0.92173 0.94194 0.93940 0.90005 0.90507 0.91099 0.90891 0.83932 0.94013 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.94 6.81 71.98 0.49 -5.45 16 2 C 0.05 2.00 0.33 -52.93 -0.02 1.98 16 3 C -0.14 -5.84 7.83 71.98 0.56 -5.28 16 4 C -0.60 -33.39 8.02 25.60 0.21 -33.18 16 5 H 0.01 0.90 7.69 -2.91 -0.02 0.88 16 6 C -0.02 -0.95 5.09 84.65 0.43 -0.52 16 7 N -0.94 -59.39 13.70 21.45 0.29 -59.10 16 8 Si 1.09 50.96 23.33 68.60 1.60 52.56 16 9 H -0.31 -15.20 7.11 99.48 0.71 -14.50 16 10 H -0.27 -11.43 6.77 99.48 0.67 -10.76 16 11 H -0.24 -9.92 5.58 99.48 0.56 -9.36 16 12 C -0.07 -2.71 2.34 -9.40 -0.02 -2.74 16 13 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 14 C -0.14 -4.13 5.38 31.78 0.17 -3.96 16 15 C 0.05 1.28 7.58 86.65 0.66 1.94 16 16 N -0.70 -21.27 7.39 -504.44 -3.73 -25.00 16 17 C 0.06 2.33 6.38 86.77 0.55 2.89 16 18 H 0.03 1.38 2.97 -2.39 -0.01 1.38 16 19 H 0.07 2.20 5.78 -2.39 -0.01 2.18 16 20 H 0.05 1.87 6.45 -2.39 -0.02 1.86 16 21 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.06 2.07 7.59 -2.39 -0.02 2.05 16 23 H 0.04 1.77 4.29 -2.39 -0.01 1.75 16 24 H 0.25 16.23 8.73 -92.71 -0.81 15.42 16 25 H 0.08 2.24 5.69 -2.39 -0.01 2.23 16 26 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 29 H 0.34 8.70 8.91 -89.70 -0.80 7.90 16 30 H 0.04 1.80 7.97 -2.39 -0.02 1.78 16 31 H 0.05 1.85 5.77 -2.38 -0.01 1.84 16 Total: -1.00 -64.08 226.17 1.29 -62.79 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.10 Total: 13.06 kcal Atomic # 6 Polarization: -47.35 SS G_CDS: 3.03 Total: -44.32 kcal Atomic # 7 Polarization: -80.66 SS G_CDS: -3.44 Total: -84.09 kcal Atomic # 14 Polarization: 50.96 SS G_CDS: 1.60 Total: 52.56 kcal Total: -64.08 1.29 -62.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261243909.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.273 kcal (2) G-P(sol) polarization free energy of solvation -64.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds