Wall clock time and date at job start Mon Mar 30 2020 02:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47176 * 2 1 4 4 C 1.50702 * 109.46827 * 240.00240 * 2 1 3 5 5 H 1.08001 * 119.99892 * 239.99899 * 4 2 1 6 6 C 1.37877 * 120.00313 * 60.00452 * 4 2 1 7 7 N 1.31513 * 119.99759 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00201 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47312 * 89.99491 * 8 6 4 10 10 H 1.48496 * 109.47121 * 209.99423 * 8 6 4 11 11 H 1.48498 * 109.47149 * 329.99743 * 8 6 4 12 12 C 1.52992 * 109.47156 * 120.00191 * 2 1 3 13 13 H 1.09005 * 110.76609 * 181.74546 * 12 2 1 14 14 C 1.55398 * 110.84620 * 305.00980 * 12 2 1 15 15 C 1.54916 * 101.74107 * 153.86232 * 14 12 2 16 16 N 1.47843 * 104.79337 * 323.02060 * 15 14 12 17 17 C 1.47439 * 108.57210 * 24.09642 * 16 15 14 18 18 H 1.08996 * 109.46740 * 299.99744 * 1 2 3 19 19 H 1.09001 * 109.46649 * 60.00101 * 1 2 3 20 20 H 1.08996 * 109.46908 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47160 * 179.97438 * 3 2 1 22 22 H 1.08997 * 109.47081 * 300.00262 * 3 2 1 23 23 H 1.09004 * 109.47125 * 60.00123 * 3 2 1 24 24 H 0.97001 * 120.00272 * 180.02562 * 7 6 4 25 25 H 1.08995 * 110.87020 * 35.77889 * 14 12 2 26 26 H 1.08997 * 111.02640 * 272.01765 * 14 12 2 27 27 H 1.08996 * 110.37177 * 204.18825 * 15 14 12 28 28 H 1.09001 * 110.46818 * 81.89579 * 15 14 12 29 29 H 1.00900 * 111.00026 * 146.36463 * 16 15 14 30 30 H 1.09002 * 109.88998 * 118.41597 * 17 16 15 31 31 H 1.09003 * 109.88733 * 239.44258 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9429 0.8298 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.3448 -2.1614 -4.4125 10 1 2.4872 -0.1401 -5.1121 11 1 3.6308 -1.7565 -3.7121 12 6 2.0401 -0.7213 1.2491 13 1 3.1294 -0.7068 1.2861 14 6 1.4389 -0.0907 2.5360 15 6 1.4872 -1.2833 3.5236 16 7 1.1706 -2.4691 2.6993 17 6 1.5118 -2.1705 1.2964 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 3.1301 1.4425 0.0005 22 1 1.6767 1.9563 -0.8899 23 1 1.6768 1.9564 0.8900 24 1 0.7083 1.1611 -3.4844 25 1 0.4124 0.2341 2.3661 26 1 2.0547 0.7355 2.8911 27 1 0.7415 -1.1565 4.3083 28 1 2.4823 -1.3780 3.9583 29 1 1.6704 -3.2817 3.0279 30 1 2.2827 -2.8577 0.9478 31 1 0.6235 -2.2619 0.6712 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261243911.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:16 Heat of formation + Delta-G solvation = -8.255559 kcal Electronic energy + Delta-G solvation = -11882.520476 eV Core-core repulsion = 9970.350712 eV Total energy + Delta-G solvation = -1912.169765 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.42831 -34.70515 -31.37285 -28.75862 -27.30276 -25.62206 -25.02622 -21.10544 -20.60654 -17.87146 -16.14813 -15.69516 -15.07641 -14.09835 -13.08053 -12.95357 -12.74659 -11.97683 -11.87668 -11.46649 -11.24374 -10.92637 -10.67125 -10.55194 -10.39406 -10.15657 -9.93779 -9.91114 -9.33271 -8.94904 -8.50972 -8.26585 -7.84239 -5.89953 -3.99771 3.32034 3.39116 3.41894 4.46124 4.83690 5.35214 5.44822 5.51506 5.75151 5.93160 6.11843 6.38391 6.46199 6.54927 6.72738 6.78877 6.87653 7.02365 7.12358 7.18143 7.40541 7.42878 7.53148 7.74188 7.81608 7.87330 8.20136 8.30475 8.56039 9.01034 9.65239 11.10677 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.056944 B = 0.013752 C = 0.012282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.596967 B = 2035.607625 C = 2279.230867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.076 3.924 3 C -0.130 4.130 4 C -0.501 4.501 5 H 0.052 0.948 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.887 3.113 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.276 1.276 12 C -0.087 4.087 13 H 0.054 0.946 14 C -0.132 4.132 15 C 0.045 3.955 16 N -0.690 5.690 17 C 0.054 3.946 18 H 0.011 0.989 19 H 0.079 0.921 20 H 0.029 0.971 21 H 0.021 0.979 22 H 0.082 0.918 23 H 0.008 0.992 24 H 0.258 0.742 25 H 0.079 0.921 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.031 0.969 29 H 0.326 0.674 30 H 0.037 0.963 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.183 -2.231 6.880 7.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.076 3.924 3 C -0.188 4.188 4 C -0.539 4.539 5 H 0.070 0.930 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.715 3.285 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.107 4.107 13 H 0.072 0.928 14 C -0.170 4.170 15 C -0.084 4.084 16 N -0.318 5.318 17 C -0.074 4.074 18 H 0.030 0.970 19 H 0.098 0.902 20 H 0.048 0.952 21 H 0.040 0.960 22 H 0.100 0.900 23 H 0.027 0.973 24 H 0.068 0.932 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.140 0.860 30 H 0.056 0.944 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.407 -1.982 6.662 6.962 hybrid contribution 1.431 -0.544 -0.847 1.750 sum 1.838 -2.526 5.814 6.601 Atomic orbital electron populations 1.21933 0.98066 0.99084 0.99897 1.17992 0.92377 0.91891 0.90159 1.21813 0.97998 0.98861 1.00096 1.21130 1.30839 1.11641 0.90334 0.92959 1.24908 0.95117 0.94958 0.98707 1.69823 1.37000 1.22865 1.22886 0.86684 0.79196 0.79469 0.83149 1.20807 1.21381 1.20145 1.22453 0.98187 0.94210 0.95822 0.92760 1.22952 1.02279 0.96286 0.95446 1.22798 0.97971 0.91354 0.96308 1.61975 1.60917 1.05322 1.03632 1.22735 1.00307 0.96292 0.88031 0.97012 0.90195 0.95163 0.96019 0.89954 0.97330 0.93214 0.90212 0.92168 0.91576 0.95095 0.86030 0.94404 0.89426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 7.65 37.16 0.28 -2.90 16 2 C 0.08 1.84 0.30 -155.66 -0.05 1.79 16 3 C -0.13 -3.12 8.09 37.16 0.30 -2.82 16 4 C -0.50 -13.34 7.48 -34.44 -0.26 -13.60 16 5 H 0.05 1.40 7.52 -52.49 -0.39 1.00 16 6 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -24.52 9.35 55.43 0.52 -24.01 16 8 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C -0.09 -1.82 2.27 -88.66 -0.20 -2.03 16 13 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 14 C -0.13 -2.40 5.51 -24.45 -0.13 -2.54 16 15 C 0.04 0.72 7.58 -2.29 -0.02 0.70 16 16 N -0.69 -11.84 7.39 -110.79 -0.82 -12.66 16 17 C 0.05 1.08 6.22 -2.84 -0.02 1.06 16 18 H 0.01 0.25 6.02 -51.93 -0.31 -0.06 16 19 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 20 H 0.03 0.71 6.08 -51.93 -0.32 0.40 16 21 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 23 H 0.01 0.17 7.44 -51.93 -0.39 -0.22 16 24 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 25 H 0.08 1.53 5.66 -51.93 -0.29 1.24 16 26 H 0.06 1.03 8.12 -51.93 -0.42 0.60 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.33 4.80 8.91 -39.29 -0.35 4.45 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.92 5.68 -51.93 -0.29 1.63 16 LS Contribution 234.42 15.07 3.53 3.53 Total: -1.00 -27.08 234.42 -6.62 -33.70 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -4.65 Total: 2.02 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -0.18 Total: -18.71 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: -0.30 Total: -36.66 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -27.08 -6.62 -33.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261243911.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.448 kcal (2) G-P(sol) polarization free energy of solvation -27.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds