Wall clock time and date at job start Mon Mar 30 2020 02:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47176 * 2 1 4 4 C 1.50702 * 109.46827 * 240.00240 * 2 1 3 5 5 H 1.08001 * 119.99892 * 239.99899 * 4 2 1 6 6 C 1.37877 * 120.00313 * 60.00452 * 4 2 1 7 7 N 1.31513 * 119.99759 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00201 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47312 * 89.99491 * 8 6 4 10 10 H 1.48496 * 109.47121 * 209.99423 * 8 6 4 11 11 H 1.48498 * 109.47149 * 329.99743 * 8 6 4 12 12 C 1.52992 * 109.47156 * 120.00191 * 2 1 3 13 13 H 1.09005 * 110.76609 * 181.74546 * 12 2 1 14 14 C 1.55398 * 110.84620 * 305.00980 * 12 2 1 15 15 C 1.54916 * 101.74107 * 153.86232 * 14 12 2 16 16 N 1.47843 * 104.79337 * 323.02060 * 15 14 12 17 17 C 1.47439 * 108.57210 * 24.09642 * 16 15 14 18 18 H 1.08996 * 109.46740 * 299.99744 * 1 2 3 19 19 H 1.09001 * 109.46649 * 60.00101 * 1 2 3 20 20 H 1.08996 * 109.46908 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47160 * 179.97438 * 3 2 1 22 22 H 1.08997 * 109.47081 * 300.00262 * 3 2 1 23 23 H 1.09004 * 109.47125 * 60.00123 * 3 2 1 24 24 H 0.97001 * 120.00272 * 180.02562 * 7 6 4 25 25 H 1.08995 * 110.87020 * 35.77889 * 14 12 2 26 26 H 1.08997 * 111.02640 * 272.01765 * 14 12 2 27 27 H 1.08996 * 110.37177 * 204.18825 * 15 14 12 28 28 H 1.09001 * 110.46818 * 81.89579 * 15 14 12 29 29 H 1.00900 * 111.00026 * 146.36463 * 16 15 14 30 30 H 1.09002 * 109.88998 * 118.41597 * 17 16 15 31 31 H 1.09003 * 109.88733 * 239.44258 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9429 0.8298 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.3448 -2.1614 -4.4125 10 1 2.4872 -0.1401 -5.1121 11 1 3.6308 -1.7565 -3.7121 12 6 2.0401 -0.7213 1.2491 13 1 3.1294 -0.7068 1.2861 14 6 1.4389 -0.0907 2.5360 15 6 1.4872 -1.2833 3.5236 16 7 1.1706 -2.4691 2.6993 17 6 1.5118 -2.1705 1.2964 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 3.1301 1.4425 0.0005 22 1 1.6767 1.9563 -0.8899 23 1 1.6768 1.9564 0.8900 24 1 0.7083 1.1611 -3.4844 25 1 0.4124 0.2341 2.3661 26 1 2.0547 0.7355 2.8911 27 1 0.7415 -1.1565 4.3083 28 1 2.4823 -1.3780 3.9583 29 1 1.6704 -3.2817 3.0279 30 1 2.2827 -2.8577 0.9478 31 1 0.6235 -2.2619 0.6712 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261243911.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:16 Heat of formation + Delta-G solvation = -25.564856 kcal Electronic energy + Delta-G solvation = -11883.271064 eV Core-core repulsion = 9970.350712 eV Total energy + Delta-G solvation = -1912.920352 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.02494 -36.47069 -33.31188 -30.23125 -28.94088 -27.55991 -27.04444 -22.81013 -22.03236 -19.68018 -17.81482 -17.39678 -16.94868 -15.82617 -14.83794 -14.60247 -14.40880 -13.66870 -13.39679 -13.24164 -13.08168 -12.81591 -12.44519 -12.26272 -12.24281 -12.04328 -11.68358 -11.60844 -11.14900 -10.77689 -10.43597 -10.29962 -9.22951 -7.94731 -6.10345 1.41752 1.44302 1.51860 2.47580 3.27036 3.48757 4.02897 4.05917 4.26672 4.51193 4.74153 4.80192 4.86068 4.93908 5.00889 5.11839 5.18568 5.23502 5.34614 5.38054 5.57536 5.65154 5.73751 5.76191 6.01126 6.25668 6.33988 6.53450 6.63189 6.97563 7.56822 9.03496 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.056944 B = 0.013752 C = 0.012282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.596967 B = 2035.607625 C = 2279.230867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.068 3.932 3 C -0.122 4.122 4 C -0.514 4.514 5 H 0.045 0.955 6 C 0.020 3.980 7 N -0.906 5.906 8 Si 0.940 3.060 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C -0.088 4.088 13 H 0.049 0.951 14 C -0.129 4.129 15 C 0.050 3.950 16 N -0.692 5.692 17 C 0.062 3.938 18 H 0.028 0.972 19 H 0.051 0.949 20 H 0.024 0.976 21 H 0.018 0.982 22 H 0.055 0.945 23 H 0.028 0.972 24 H 0.256 0.744 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.051 0.949 29 H 0.342 0.658 30 H 0.038 0.962 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.640 -2.785 8.136 8.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.068 3.932 3 C -0.180 4.180 4 C -0.552 4.552 5 H 0.064 0.936 6 C -0.179 4.179 7 N -0.546 5.546 8 Si 0.768 3.232 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.198 1.198 12 C -0.108 4.108 13 H 0.067 0.933 14 C -0.166 4.166 15 C -0.079 4.079 16 N -0.322 5.322 17 C -0.067 4.067 18 H 0.047 0.953 19 H 0.070 0.930 20 H 0.043 0.957 21 H 0.037 0.963 22 H 0.073 0.927 23 H 0.047 0.953 24 H 0.066 0.934 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.069 0.931 29 H 0.158 0.842 30 H 0.056 0.944 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.871 -2.547 7.933 8.377 hybrid contribution 1.284 -0.368 -1.211 1.803 sum 2.154 -2.915 6.722 7.637 Atomic orbital electron populations 1.21771 0.98249 0.98496 0.99277 1.18036 0.92219 0.92002 0.90974 1.21684 0.97675 0.98911 0.99706 1.21425 1.30606 1.11541 0.91648 0.93633 1.25541 0.95524 0.95674 1.01143 1.69957 1.37741 1.23767 1.23146 0.85833 0.78714 0.78451 0.80247 1.20644 1.21288 1.19796 1.22333 0.97878 0.94921 0.95667 0.93252 1.22910 1.01489 0.97626 0.94620 1.22838 0.99826 0.89450 0.95797 1.61892 1.61433 1.06571 1.02331 1.22492 0.98970 0.95721 0.89488 0.95338 0.92981 0.95690 0.96290 0.92660 0.95302 0.93440 0.91328 0.90807 0.89689 0.93064 0.84207 0.94363 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.80 7.65 71.98 0.55 -5.25 16 2 C 0.07 3.26 0.30 -52.93 -0.02 3.24 16 3 C -0.12 -5.81 8.09 71.98 0.58 -5.23 16 4 C -0.51 -27.40 7.48 25.60 0.19 -27.21 16 5 H 0.05 2.43 7.52 -2.91 -0.02 2.41 16 6 C 0.02 1.06 5.15 84.65 0.44 1.50 16 7 N -0.91 -50.75 9.35 21.45 0.20 -50.55 16 8 Si 0.94 43.48 29.54 68.60 2.03 45.50 16 9 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 10 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 12 C -0.09 -3.57 2.27 -9.52 -0.02 -3.59 16 13 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 14 C -0.13 -4.35 5.51 32.07 0.18 -4.17 16 15 C 0.05 1.40 7.58 86.78 0.66 2.06 16 16 N -0.69 -21.87 7.39 -504.42 -3.73 -25.60 16 17 C 0.06 2.38 6.22 86.65 0.54 2.92 16 18 H 0.03 1.23 6.02 -2.39 -0.01 1.21 16 19 H 0.05 2.78 6.07 -2.39 -0.01 2.77 16 20 H 0.02 1.18 6.08 -2.39 -0.01 1.16 16 21 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.05 2.93 6.07 -2.39 -0.01 2.92 16 23 H 0.03 1.20 7.44 -2.39 -0.02 1.19 16 24 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 25 H 0.07 2.47 5.66 -2.39 -0.01 2.46 16 26 H 0.07 2.28 8.12 -2.39 -0.02 2.26 16 27 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.34 9.02 8.91 -89.69 -0.80 8.23 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 2.69 5.68 -2.39 -0.01 2.68 16 Total: -1.00 -56.49 234.42 1.90 -54.58 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.31 Total: 11.79 kcal Atomic # 6 Polarization: -38.82 SS G_CDS: 3.09 Total: -35.73 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -3.53 Total: -76.15 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -56.49 1.90 -54.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261243911.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.020 kcal (2) G-P(sol) polarization free energy of solvation -56.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds