Wall clock time and date at job start Mon Mar 30 2020 02:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47083 * 2 1 4 4 C 1.50702 * 109.46780 * 119.99785 * 2 1 3 5 5 H 1.07997 * 119.99996 * 120.00478 * 4 2 1 6 6 C 1.37878 * 119.99891 * 300.00051 * 4 2 1 7 7 N 1.31511 * 120.00135 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00051 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46993 * 59.99502 * 8 6 4 10 10 H 1.48496 * 109.47097 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46747 * 299.99809 * 8 6 4 12 12 C 1.52993 * 109.47050 * 239.99755 * 2 1 3 13 13 N 1.46907 * 109.47054 * 295.23840 * 12 2 1 14 14 C 1.47483 * 110.99887 * 79.47345 * 13 12 2 15 15 C 1.53507 * 87.93358 * 138.70005 * 14 13 12 16 16 C 1.47484 * 110.99927 * 175.44068 * 13 12 2 17 17 H 1.09004 * 109.46940 * 67.85544 * 1 2 3 18 18 H 1.09002 * 109.47205 * 187.85288 * 1 2 3 19 19 H 1.09003 * 109.46934 * 307.86058 * 1 2 3 20 20 H 1.08998 * 109.47722 * 52.87585 * 3 2 1 21 21 H 1.08993 * 109.47318 * 172.88339 * 3 2 1 22 22 H 1.09003 * 109.46858 * 292.88143 * 3 2 1 23 23 H 0.97002 * 119.99887 * 180.02562 * 7 6 4 24 24 H 1.08999 * 109.47360 * 55.23842 * 12 2 1 25 25 H 1.09000 * 109.47141 * 175.24700 * 12 2 1 26 26 H 1.08996 * 113.47451 * 253.47091 * 14 13 12 27 27 H 1.09004 * 113.47592 * 23.93458 * 14 13 12 28 28 H 1.09001 * 114.17266 * 220.32796 * 15 14 13 29 29 H 1.09008 * 114.34349 * 87.63151 * 15 14 13 30 30 H 1.08997 * 113.47615 * 336.06836 * 16 13 12 31 31 H 1.09001 * 113.47249 * 106.53300 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3223 -1.1194 4.0081 9 1 3.8073 -1.1189 4.0079 10 1 1.8277 -0.4190 5.2205 11 1 1.8278 -2.5196 4.0083 12 6 2.0400 -0.7213 -1.2492 13 7 1.6465 -2.1355 -1.1930 14 6 0.2376 -2.3084 -1.5936 15 6 0.6708 -3.5570 -2.3744 16 6 2.0268 -2.8396 -2.4318 17 1 -0.3633 0.3874 -0.9519 18 1 -0.3634 -1.0180 0.1404 19 1 -0.3633 0.6307 0.8114 20 1 1.5765 1.9918 0.8193 21 1 3.1225 1.4451 0.1273 22 1 1.7844 1.9182 -0.9468 23 1 0.7095 1.1620 3.4844 24 1 1.6087 -0.2591 -2.1371 25 1 3.1267 -0.6481 -1.2928 26 1 -0.4275 -2.5275 -0.7584 27 1 -0.1344 -1.5055 -2.2302 28 1 0.1838 -3.6689 -3.3431 29 1 0.6762 -4.4751 -1.7867 30 1 2.1322 -2.1786 -3.2921 31 1 2.8779 -3.5090 -2.3070 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261320025.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:21 Heat of formation + Delta-G solvation = 33.822160 kcal Electronic energy + Delta-G solvation = -11834.814427 eV Core-core repulsion = 9924.469289 eV Total energy + Delta-G solvation = -1910.345138 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.44450 -35.30884 -31.33865 -28.48064 -26.27866 -24.92816 -24.58985 -23.22683 -19.33512 -18.61719 -15.97716 -15.42174 -14.77865 -14.54458 -13.72062 -12.80976 -12.62099 -12.08263 -11.52363 -11.48035 -11.10851 -11.07015 -10.83042 -10.52699 -10.49411 -10.36098 -9.97165 -9.75440 -9.24153 -8.98252 -8.50445 -8.17875 -7.97883 -5.78408 -3.82030 3.43070 3.46474 3.51086 4.58462 4.73861 4.95043 5.35046 5.48620 5.81340 5.86694 6.03892 6.06388 6.15482 6.24815 6.38351 6.58365 6.68378 6.90622 6.95333 7.01184 7.16907 7.30211 7.50493 7.72965 7.78692 8.01256 8.19588 8.35356 8.70969 9.19902 9.80162 11.25016 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.044968 B = 0.014563 C = 0.012778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.508901 B = 1922.185953 C = 2190.820354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.067 3.933 3 C -0.128 4.128 4 C -0.475 4.475 5 H 0.061 0.939 6 C 0.056 3.944 7 N -0.897 5.897 8 Si 0.889 3.111 9 H -0.281 1.281 10 H -0.292 1.292 11 H -0.279 1.279 12 C 0.039 3.961 13 N -0.442 5.442 14 C 0.008 3.992 15 C -0.153 4.153 16 C -0.012 4.012 17 H -0.002 1.002 18 H 0.039 0.961 19 H 0.076 0.924 20 H 0.081 0.919 21 H 0.026 0.974 22 H 0.003 0.997 23 H 0.255 0.745 24 H 0.013 0.987 25 H 0.058 0.942 26 H 0.084 0.916 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.571 -4.172 -7.617 8.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.066 3.934 3 C -0.186 4.186 4 C -0.514 4.514 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.538 5.538 8 Si 0.718 3.282 9 H -0.207 1.207 10 H -0.218 1.218 11 H -0.205 1.205 12 C -0.089 4.089 13 N -0.164 5.164 14 C -0.121 4.121 15 C -0.191 4.191 16 C -0.142 4.142 17 H 0.017 0.983 18 H 0.058 0.942 19 H 0.095 0.905 20 H 0.100 0.900 21 H 0.046 0.954 22 H 0.022 0.978 23 H 0.065 0.935 24 H 0.031 0.969 25 H 0.076 0.924 26 H 0.102 0.898 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.386 -4.252 -6.796 8.025 hybrid contribution 0.128 0.025 0.093 0.160 sum -0.258 -4.226 -6.703 7.928 Atomic orbital electron populations 1.22004 0.98282 1.00626 0.98066 1.18096 0.92355 0.91574 0.91335 1.21798 0.99193 0.98893 0.98728 1.21044 1.29899 1.11027 0.89433 0.92068 1.24930 0.95517 0.95125 0.98695 1.69849 1.37929 1.23303 1.22688 0.86717 0.79008 0.79824 0.82693 1.20656 1.21755 1.20516 1.22803 0.99552 0.88296 0.98256 1.69024 1.05016 1.13066 1.29296 1.23755 0.94190 0.95783 0.98336 1.23163 0.97262 0.98615 1.00068 1.23763 0.98079 0.98219 0.94106 0.98289 0.94224 0.90537 0.89997 0.95436 0.97838 0.93490 0.96882 0.92386 0.89785 0.92214 0.91822 0.89494 0.92613 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 6.90 37.16 0.26 -2.96 16 2 C 0.07 1.66 0.58 -155.66 -0.09 1.58 16 3 C -0.13 -3.14 8.15 37.15 0.30 -2.84 16 4 C -0.48 -13.16 7.56 -34.44 -0.26 -13.42 16 5 H 0.06 1.75 7.51 -52.49 -0.39 1.35 16 6 C 0.06 1.57 5.15 -17.82 -0.09 1.48 16 7 N -0.90 -25.53 9.53 55.43 0.53 -25.00 16 8 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 9 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 C 0.04 0.85 3.88 -3.82 -0.01 0.84 16 13 N -0.44 -9.04 5.65 -244.67 -1.38 -10.42 16 14 C 0.01 0.15 5.44 -7.55 -0.04 0.11 16 15 C -0.15 -2.24 8.47 -26.20 -0.22 -2.47 16 16 C -0.01 -0.20 7.71 -7.55 -0.06 -0.26 16 17 H 0.00 -0.04 7.88 -51.93 -0.41 -0.45 16 18 H 0.04 0.95 5.37 -51.93 -0.28 0.67 16 19 H 0.08 2.05 6.28 -51.93 -0.33 1.72 16 20 H 0.08 2.19 6.26 -51.93 -0.32 1.86 16 21 H 0.03 0.66 8.13 -51.93 -0.42 0.23 16 22 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 23 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 24 H 0.01 0.27 7.55 -51.93 -0.39 -0.13 16 25 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.08 1.59 6.76 -51.93 -0.35 1.24 16 27 H 0.06 1.04 7.20 -51.93 -0.37 0.67 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 1.24 8.14 -51.92 -0.42 0.81 16 30 H 0.06 0.84 7.86 -51.93 -0.41 0.43 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 239.70 15.07 3.61 3.61 Total: -1.00 -28.47 239.70 -7.41 -35.88 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -4.93 Total: -3.15 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -0.22 Total: -17.93 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: -0.85 Total: -35.42 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -28.47 -7.41 -35.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261320025.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.703 kcal (2) G-P(sol) polarization free energy of solvation -28.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds