Wall clock time and date at job start Mon Mar 30 2020 01:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46854 * 111.00123 * 2 1 4 4 C 1.53029 * 109.52618 * 174.15972 * 3 2 1 5 5 C 1.53126 * 109.27771 * 59.18006 * 4 3 2 6 6 C 1.53118 * 109.15095 * 302.33712 * 5 4 3 7 7 C 1.46844 * 111.00264 * 235.79206 * 2 1 3 8 8 C 1.52998 * 109.46578 * 65.82889 * 7 2 1 9 9 C 1.50708 * 109.45880 * 305.85339 * 7 2 1 10 10 H 1.07997 * 119.99737 * 145.67856 * 9 7 2 11 11 C 1.37866 * 119.99937 * 325.67812 * 9 7 2 12 12 N 1.31523 * 119.99897 * 173.73366 * 11 9 7 13 13 Si 1.86796 * 120.00428 * 353.73356 * 11 9 7 14 14 H 1.48503 * 109.46914 * 84.91882 * 13 11 9 15 15 H 1.48501 * 109.47079 * 324.92282 * 13 11 9 16 16 H 1.48502 * 109.47577 * 204.91902 * 13 11 9 17 17 H 1.09002 * 109.47011 * 178.34749 * 1 2 3 18 18 H 1.09003 * 109.47456 * 298.34135 * 1 2 3 19 19 H 1.09003 * 109.47407 * 58.34951 * 1 2 3 20 20 H 1.09005 * 109.46044 * 294.17914 * 3 2 1 21 21 H 1.09001 * 109.46066 * 54.15135 * 3 2 1 22 22 H 1.08997 * 109.50426 * 179.12090 * 4 3 2 23 23 H 1.09002 * 109.50586 * 299.24081 * 4 3 2 24 24 H 1.08994 * 109.52260 * 62.24703 * 5 4 3 25 25 H 1.08998 * 109.52289 * 182.38014 * 5 4 3 26 26 H 1.09002 * 109.51357 * 297.72719 * 6 5 4 27 27 H 1.09000 * 109.49296 * 177.60447 * 6 5 4 28 28 H 1.09005 * 109.47022 * 300.02893 * 8 7 2 29 29 H 1.09005 * 109.46567 * 60.02257 * 8 7 2 30 30 H 1.08994 * 109.47676 * 180.02562 * 8 7 2 31 31 H 0.97001 * 119.99767 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5180 1.3343 0.1468 5 6 4.1187 0.5371 -1.0144 6 6 3.5181 -0.8714 -1.0205 7 6 1.9952 -0.7707 -1.1337 8 6 1.6266 -0.0689 -2.4423 9 6 1.3982 -2.1544 -1.1205 10 1 1.1870 -2.6602 -2.0510 11 6 1.1216 -2.7744 0.0794 12 7 0.4888 -3.9273 0.0934 13 14 1.6457 -1.9772 1.6853 14 1 0.6126 -1.0000 2.1132 15 1 2.9400 -1.2757 1.4905 16 1 1.8012 -3.0220 2.7291 17 1 -0.3633 -1.0273 -0.0296 18 1 -0.3634 0.4879 0.9045 19 1 -0.3634 0.5393 -0.8748 20 1 1.7324 1.8609 -0.9376 21 1 1.5635 1.9257 0.8331 22 1 3.9098 2.3513 0.1310 23 1 3.7813 0.8568 1.0906 24 1 3.8886 1.0355 -1.9560 25 1 5.1998 0.4724 -0.8911 26 1 3.7812 -1.3834 -0.0949 27 1 3.9100 -1.4302 -1.8704 28 1 0.5419 0.0025 -2.5232 29 1 2.0583 0.9319 -2.4519 30 1 2.0167 -0.6411 -3.2840 31 1 0.2945 -4.3637 0.9376 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261327794.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:42 Heat of formation + Delta-G solvation = 7.099531 kcal Electronic energy + Delta-G solvation = -12409.788202 eV Core-core repulsion = 10498.284284 eV Total energy + Delta-G solvation = -1911.503918 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.05318 -33.25138 -32.29718 -30.87889 -27.03191 -25.52570 -24.79887 -22.03227 -20.61420 -17.97415 -16.69935 -14.99279 -14.58235 -14.31959 -13.75628 -13.25966 -12.56591 -12.38150 -12.11779 -12.03319 -11.65428 -11.25437 -10.75148 -10.64582 -10.31322 -10.04274 -9.95283 -9.73482 -9.59743 -9.36616 -8.85742 -8.25757 -7.09989 -5.93853 -4.01754 3.72508 3.74824 3.96477 4.73377 4.95167 5.32403 5.48701 5.55646 5.66069 6.03024 6.11261 6.17051 6.25759 6.28953 6.35534 6.39111 6.45627 6.52496 6.63886 6.67766 6.87369 6.95600 7.05599 7.15833 7.41792 7.74208 7.99255 8.23553 8.65067 9.02365 9.69476 11.13605 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.043193 B = 0.022208 C = 0.020850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.100250 B = 1260.517065 C = 1342.579666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.528 5.528 3 C 0.051 3.949 4 C -0.115 4.115 5 C -0.125 4.125 6 C -0.107 4.107 7 C 0.205 3.795 8 C -0.160 4.160 9 C -0.521 4.521 10 H 0.072 0.928 11 C 0.072 3.928 12 N -0.903 5.903 13 Si 0.957 3.043 14 H -0.289 1.289 15 H -0.267 1.267 16 H -0.345 1.345 17 H 0.095 0.905 18 H 0.044 0.956 19 H 0.017 0.983 20 H 0.033 0.967 21 H 0.058 0.942 22 H 0.053 0.947 23 H 0.065 0.935 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.035 0.965 30 H 0.048 0.952 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.746 9.837 -0.272 10.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.254 5.254 3 C -0.077 4.077 4 C -0.152 4.152 5 C -0.162 4.162 6 C -0.146 4.146 7 C 0.117 3.883 8 C -0.219 4.219 9 C -0.558 4.558 10 H 0.090 0.910 11 C -0.131 4.131 12 N -0.540 5.540 13 Si 0.796 3.204 14 H -0.217 1.217 15 H -0.194 1.194 16 H -0.279 1.279 17 H 0.113 0.887 18 H 0.062 0.938 19 H 0.036 0.964 20 H 0.051 0.949 21 H 0.076 0.924 22 H 0.071 0.929 23 H 0.084 0.916 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.817 9.477 0.222 10.220 hybrid contribution -0.098 0.711 0.108 0.726 sum 3.719 10.189 0.330 10.851 Atomic orbital electron populations 1.22404 0.87890 1.04119 0.97850 1.61605 1.07867 1.11315 1.44659 1.22039 0.95179 0.91044 0.99429 1.21554 0.95141 0.98828 0.99727 1.21716 0.98668 0.98179 0.97654 1.21934 0.96709 0.94042 1.01884 1.19088 0.91539 0.93155 0.84479 1.22350 1.00522 0.98742 1.00258 1.20777 1.42879 0.97708 0.94456 0.91031 1.25169 0.93073 0.94288 1.00559 1.70002 1.39753 1.17114 1.27115 0.85622 0.80694 0.74852 0.79282 1.21687 1.19377 1.27928 0.88659 0.93756 0.96400 0.94857 0.92370 0.92864 0.91645 0.92793 0.93354 0.91455 0.92609 0.93498 0.94610 0.93292 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 6.94 60.06 0.42 0.96 16 2 N -0.53 -11.67 1.07 -228.54 -0.24 -11.92 16 3 C 0.05 0.93 5.17 -3.83 -0.02 0.91 16 4 C -0.11 -1.95 6.09 -26.65 -0.16 -2.12 16 5 C -0.12 -2.18 5.70 -26.61 -0.15 -2.33 16 6 C -0.11 -2.30 4.60 -26.65 -0.12 -2.42 16 7 C 0.21 4.72 0.27 -132.76 -0.04 4.68 16 8 C -0.16 -3.28 7.44 37.16 0.28 -3.00 16 9 C -0.52 -14.43 7.65 -34.44 -0.26 -14.69 16 10 H 0.07 2.17 8.05 -52.49 -0.42 1.75 16 11 C 0.07 2.08 4.29 -17.82 -0.08 2.01 16 12 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 13 Si 0.96 24.81 23.08 -169.99 -3.92 20.89 16 14 H -0.29 -7.30 5.86 56.52 0.33 -6.96 16 15 H -0.27 -6.68 5.01 56.52 0.28 -6.39 16 16 H -0.35 -9.39 7.11 56.52 0.40 -8.98 16 17 H 0.09 2.37 5.24 -51.93 -0.27 2.10 16 18 H 0.04 0.89 7.80 -51.93 -0.40 0.48 16 19 H 0.02 0.35 6.75 -51.93 -0.35 0.00 16 20 H 0.03 0.58 6.19 -51.93 -0.32 0.26 16 21 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.06 1.19 7.87 -51.93 -0.41 0.79 16 24 H 0.05 0.89 6.55 -51.93 -0.34 0.55 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 1.57 5.53 -51.93 -0.29 1.28 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.05 0.97 6.67 -51.93 -0.35 0.62 16 29 H 0.04 0.65 4.80 -51.93 -0.25 0.40 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 218.68 15.07 3.30 3.30 Total: -1.00 -29.93 218.68 -5.08 -35.00 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: -4.84 Total: -4.21 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -0.14 Total: -15.99 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.53 Total: -38.99 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -3.92 Total: 20.89 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -29.93 -5.08 -35.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261327794.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.104 kcal (2) G-P(sol) polarization free energy of solvation -29.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds