Wall clock time and date at job start Mon Mar 30 2020 02:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47012 * 2 1 4 4 H 1.09002 * 115.55360 * 29.33082 * 3 2 1 5 5 C 1.53075 * 117.51301 * 243.60273 * 3 2 1 6 6 C 1.52997 * 59.98416 * 252.52475 * 5 3 2 7 7 H 1.09000 * 117.49699 * 252.49888 * 6 5 3 8 8 N 1.46899 * 117.50067 * 107.50371 * 6 5 3 9 9 C 1.46894 * 111.00313 * 136.24710 * 8 6 5 10 10 H 1.08998 * 109.46828 * 35.00794 * 9 8 6 11 11 C 1.52997 * 109.47515 * 275.00230 * 9 8 6 12 12 C 1.50706 * 109.47162 * 154.99823 * 9 8 6 13 13 H 1.07998 * 119.99629 * 0.02562 * 12 9 8 14 14 C 1.37875 * 119.99955 * 179.97438 * 12 9 8 15 15 N 1.31510 * 120.00308 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99908 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47233 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46997 * 120.00173 * 16 14 12 19 19 H 1.48501 * 109.47364 * 240.00497 * 16 14 12 20 20 H 1.09002 * 109.47949 * 300.00448 * 1 2 3 21 21 H 1.09007 * 109.46928 * 60.00360 * 1 2 3 22 22 H 1.08994 * 109.47374 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47306 * 239.99862 * 2 1 3 24 24 H 1.09007 * 109.46928 * 119.99640 * 2 1 3 25 25 H 1.09003 * 117.49041 * 145.03433 * 5 3 2 26 26 H 1.09004 * 117.51097 * 0.02562 * 5 3 2 27 27 H 1.00902 * 111.00123 * 260.20837 * 8 6 5 28 28 H 1.09002 * 109.47153 * 59.99762 * 11 9 8 29 29 H 1.09001 * 109.46832 * 299.99953 * 11 9 8 30 30 H 1.09004 * 109.47261 * 179.97438 * 11 9 8 31 31 H 0.96998 * 120.00365 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3884 2.1716 0.4817 5 6 2.8447 1.9080 -1.2161 6 6 3.5501 1.6579 0.1184 7 1 3.8919 2.5286 0.6779 8 7 4.3994 0.4639 0.2233 9 6 5.6659 0.7765 0.8986 10 1 5.4910 1.5264 1.6699 11 6 6.6680 1.3190 -0.1224 12 6 6.2202 -0.4743 1.5307 13 1 5.6852 -1.4080 1.4396 14 6 7.4107 -0.4267 2.2245 15 7 8.0624 0.7102 2.3351 16 14 8.0981 -1.9772 3.0075 17 1 7.1820 -3.1149 2.7398 18 1 9.4345 -2.2721 2.4311 19 1 8.2243 -1.7773 4.4736 20 1 -0.3635 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 2.7221 2.9433 -1.5343 26 1 3.0105 1.1867 -2.0163 27 1 3.9138 -0.2850 0.6940 28 1 6.2671 2.2236 -0.5796 29 1 6.8429 0.5689 -0.8937 30 1 7.6077 1.5513 0.3788 31 1 8.8998 0.7438 2.8235 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300357910.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:33 Heat of formation + Delta-G solvation = 7.231430 kcal Electronic energy + Delta-G solvation = -11167.119499 eV Core-core repulsion = 9255.621300 eV Total energy + Delta-G solvation = -1911.498198 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.92519 -34.59405 -32.14192 -31.01108 -27.46940 -25.12926 -23.64514 -21.06784 -20.27383 -19.01706 -16.50759 -15.27383 -14.72121 -14.40019 -13.96508 -13.41314 -12.75380 -12.40186 -11.99172 -11.62104 -11.31214 -11.10937 -10.91634 -10.81550 -10.62238 -10.43554 -10.16207 -10.07004 -9.75262 -9.27341 -8.77417 -8.44967 -7.16723 -6.02224 -4.08750 3.28899 3.36641 3.40934 4.33671 4.40241 4.97661 5.15104 5.29500 5.33243 5.51035 5.56942 5.79081 5.96876 6.07288 6.18228 6.25020 6.34442 6.39410 6.53295 6.73794 6.92626 7.19912 7.27221 7.55493 7.79533 7.91960 8.28368 8.42346 8.68952 9.02530 9.57256 11.04190 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.052928 B = 0.009818 C = 0.008635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.895789 B = 2851.360827 C = 3241.850394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 C -0.175 4.175 4 H 0.094 0.906 5 C -0.176 4.176 6 C 0.038 3.962 7 H 0.089 0.911 8 N -0.657 5.657 9 C 0.212 3.788 10 H 0.002 0.998 11 C -0.123 4.123 12 C -0.519 4.519 13 H 0.060 0.940 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.897 3.103 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.285 1.285 20 H 0.050 0.950 21 H 0.051 0.949 22 H 0.050 0.950 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.334 0.666 28 H 0.005 0.995 29 H 0.030 0.970 30 H 0.080 0.920 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.792 0.457 -3.244 10.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.195 4.195 4 H 0.112 0.888 5 C -0.215 4.215 6 C -0.074 4.074 7 H 0.107 0.893 8 N -0.289 5.289 9 C 0.105 3.895 10 H 0.020 0.980 11 C -0.182 4.182 12 C -0.557 4.557 13 H 0.078 0.922 14 C -0.140 4.140 15 N -0.529 5.529 16 Si 0.724 3.276 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 H 0.069 0.931 21 H 0.070 0.930 22 H 0.069 0.931 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.100 0.900 26 H 0.111 0.889 27 H 0.154 0.846 28 H 0.024 0.976 29 H 0.049 0.951 30 H 0.098 0.902 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.333 0.578 -3.777 10.085 hybrid contribution 0.180 -0.575 1.298 1.431 sum -9.153 0.004 -2.478 9.482 Atomic orbital electron populations 1.21734 0.96199 1.01026 1.01330 1.20956 0.94858 0.94639 1.02296 1.22665 0.95052 0.97732 1.04044 0.88814 1.23198 1.04826 1.00825 0.92612 1.22548 0.89855 0.96237 0.98760 0.89328 1.60469 1.05522 1.05528 1.57333 1.19175 0.84499 0.95550 0.90313 0.97988 1.21701 1.01681 0.96545 0.98249 1.21311 1.06849 0.94972 1.32612 0.92209 1.24918 0.96704 0.96233 0.96161 1.69908 1.16288 1.24825 1.41845 0.86467 0.78973 0.83280 0.78836 1.19744 1.20951 1.21086 0.93119 0.93013 0.93101 0.91483 0.91817 0.89966 0.88864 0.84617 0.97552 0.95060 0.90179 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.87 37.16 0.37 -1.33 16 2 C -0.09 -1.29 5.30 -26.73 -0.14 -1.43 16 3 C -0.18 -2.71 5.74 -90.58 -0.52 -3.23 16 4 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 5 C -0.18 -2.85 10.11 -26.69 -0.27 -3.12 16 6 C 0.04 0.72 6.02 -67.71 -0.41 0.31 16 7 H 0.09 1.76 7.60 -51.93 -0.39 1.37 16 8 N -0.66 -14.51 6.36 -100.96 -0.64 -15.15 16 9 C 0.21 5.51 2.56 -68.87 -0.18 5.33 16 10 H 0.00 0.07 7.57 -51.93 -0.39 -0.32 16 11 C -0.12 -3.17 9.19 37.16 0.34 -2.83 16 12 C -0.52 -14.45 8.59 -34.44 -0.30 -14.75 16 13 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 14 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 15 N -0.89 -25.72 11.32 55.43 0.63 -25.10 16 16 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.07 1.00 7.88 -51.93 -0.41 0.59 16 24 H 0.06 0.96 7.33 -51.93 -0.38 0.58 16 25 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.09 1.55 8.03 -51.93 -0.42 1.13 16 27 H 0.33 7.18 6.55 -39.29 -0.26 6.92 16 28 H 0.01 0.13 8.07 -51.93 -0.42 -0.29 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 255.03 15.07 3.84 3.84 Total: -1.00 -28.32 255.03 -7.44 -35.77 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.05 Total: 3.65 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -1.20 Total: -19.41 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: -0.01 Total: -40.24 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.32 -7.44 -35.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300357910.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.998 kcal (2) G-P(sol) polarization free energy of solvation -28.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds