Wall clock time and date at job start Mon Mar 30 2020 02:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47012 * 2 1 4 4 H 1.09002 * 115.55360 * 29.33082 * 3 2 1 5 5 C 1.53075 * 117.51301 * 243.60273 * 3 2 1 6 6 C 1.52997 * 59.98416 * 252.52475 * 5 3 2 7 7 H 1.09000 * 117.49699 * 252.49888 * 6 5 3 8 8 N 1.46899 * 117.50067 * 107.50371 * 6 5 3 9 9 C 1.46894 * 111.00313 * 136.24710 * 8 6 5 10 10 H 1.08998 * 109.46828 * 35.00794 * 9 8 6 11 11 C 1.52997 * 109.47515 * 275.00230 * 9 8 6 12 12 C 1.50706 * 109.47162 * 154.99823 * 9 8 6 13 13 H 1.07998 * 119.99629 * 0.02562 * 12 9 8 14 14 C 1.37875 * 119.99955 * 179.97438 * 12 9 8 15 15 N 1.31510 * 120.00308 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99908 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47233 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46997 * 120.00173 * 16 14 12 19 19 H 1.48501 * 109.47364 * 240.00497 * 16 14 12 20 20 H 1.09002 * 109.47949 * 300.00448 * 1 2 3 21 21 H 1.09007 * 109.46928 * 60.00360 * 1 2 3 22 22 H 1.08994 * 109.47374 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47306 * 239.99862 * 2 1 3 24 24 H 1.09007 * 109.46928 * 119.99640 * 2 1 3 25 25 H 1.09003 * 117.49041 * 145.03433 * 5 3 2 26 26 H 1.09004 * 117.51097 * 0.02562 * 5 3 2 27 27 H 1.00902 * 111.00123 * 260.20837 * 8 6 5 28 28 H 1.09002 * 109.47153 * 59.99762 * 11 9 8 29 29 H 1.09001 * 109.46832 * 299.99953 * 11 9 8 30 30 H 1.09004 * 109.47261 * 179.97438 * 11 9 8 31 31 H 0.96998 * 120.00365 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3884 2.1716 0.4817 5 6 2.8447 1.9080 -1.2161 6 6 3.5501 1.6579 0.1184 7 1 3.8919 2.5286 0.6779 8 7 4.3994 0.4639 0.2233 9 6 5.6659 0.7765 0.8986 10 1 5.4910 1.5264 1.6699 11 6 6.6680 1.3190 -0.1224 12 6 6.2202 -0.4743 1.5307 13 1 5.6852 -1.4080 1.4396 14 6 7.4107 -0.4267 2.2245 15 7 8.0624 0.7102 2.3351 16 14 8.0981 -1.9772 3.0075 17 1 7.1820 -3.1149 2.7398 18 1 9.4345 -2.2721 2.4311 19 1 8.2243 -1.7773 4.4736 20 1 -0.3635 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 2.7221 2.9433 -1.5343 26 1 3.0105 1.1867 -2.0163 27 1 3.9138 -0.2850 0.6940 28 1 6.2671 2.2236 -0.5796 29 1 6.8429 0.5689 -0.8937 30 1 7.6077 1.5513 0.3788 31 1 8.8998 0.7438 2.8235 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300357910.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:33 Heat of formation + Delta-G solvation = -9.968979 kcal Electronic energy + Delta-G solvation = -11167.865364 eV Core-core repulsion = 9255.621300 eV Total energy + Delta-G solvation = -1912.244064 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.38000 -36.47605 -33.86751 -32.45518 -29.37730 -27.27674 -24.74086 -22.66685 -21.97096 -20.52096 -18.52953 -17.00720 -16.36106 -15.98977 -15.45868 -14.96468 -14.49537 -13.88349 -13.41417 -13.28371 -12.88122 -12.79936 -12.52981 -12.47902 -12.24879 -12.15569 -11.91673 -11.82108 -11.29712 -10.91764 -10.59477 -10.55802 -8.91883 -8.15242 -6.30058 1.40598 1.42121 1.54328 2.40235 2.97947 3.13176 3.47432 3.85988 4.12676 4.35873 4.41046 4.60054 4.65193 4.80393 4.88545 4.91486 5.06573 5.10709 5.20598 5.21987 5.29398 5.33797 5.48584 5.56784 5.67131 5.84886 6.19519 6.47248 6.77704 6.98435 7.40722 8.90925 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.052928 B = 0.009818 C = 0.008635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.895789 B = 2851.360827 C = 3241.850394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 C -0.150 4.150 4 H 0.113 0.887 5 C -0.160 4.160 6 C -0.003 4.003 7 H 0.074 0.926 8 N -0.654 5.654 9 C 0.217 3.783 10 H -0.031 1.031 11 C -0.111 4.111 12 C -0.540 4.540 13 H 0.059 0.941 14 C 0.012 3.988 15 N -0.919 5.919 16 Si 0.965 3.035 17 H -0.266 1.266 18 H -0.279 1.279 19 H -0.279 1.279 20 H 0.057 0.943 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.103 0.897 26 H 0.090 0.910 27 H 0.333 0.667 28 H 0.020 0.980 29 H 0.027 0.973 30 H 0.057 0.943 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.046 -0.167 -3.561 11.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.130 4.130 3 C -0.170 4.170 4 H 0.131 0.869 5 C -0.198 4.198 6 C -0.115 4.115 7 H 0.092 0.908 8 N -0.285 5.285 9 C 0.109 3.891 10 H -0.013 1.013 11 C -0.169 4.169 12 C -0.578 4.578 13 H 0.077 0.923 14 C -0.187 4.187 15 N -0.558 5.558 16 Si 0.790 3.210 17 H -0.190 1.190 18 H -0.205 1.205 19 H -0.205 1.205 20 H 0.076 0.924 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.122 0.878 26 H 0.109 0.891 27 H 0.153 0.847 28 H 0.039 0.961 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.609 -0.038 -4.107 11.377 hybrid contribution 0.530 -0.330 1.380 1.515 sum -10.079 -0.367 -2.727 10.448 Atomic orbital electron populations 1.21684 0.93713 1.02113 1.02154 1.20991 0.97000 0.93532 1.01440 1.22792 0.92509 0.98969 1.02699 0.86863 1.23244 1.02968 1.02092 0.91536 1.22561 0.92231 0.94841 1.01818 0.90847 1.60398 1.04938 1.06900 1.56292 1.18962 0.86402 0.94111 0.89672 1.01336 1.21520 1.00663 0.96982 0.97772 1.21622 1.07380 0.95527 1.33269 0.92285 1.25765 0.96960 0.99401 0.96570 1.70033 1.16628 1.26804 1.42331 0.85401 0.78219 0.79463 0.77904 1.18987 1.20473 1.20490 0.92412 0.92039 0.91992 0.92162 0.92939 0.87837 0.89127 0.84710 0.96122 0.95422 0.92428 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.87 71.98 0.71 -2.12 16 2 C -0.09 -2.46 5.30 30.59 0.16 -2.30 16 3 C -0.15 -4.35 5.74 -10.77 -0.06 -4.41 16 4 H 0.11 2.87 8.07 -2.39 -0.02 2.85 16 5 C -0.16 -4.85 10.11 30.62 0.31 -4.54 16 6 C 0.00 -0.13 6.02 44.91 0.27 0.15 16 7 H 0.07 2.98 7.60 -2.39 -0.02 2.96 16 8 N -0.65 -29.11 6.36 -473.33 -3.01 -32.12 16 9 C 0.22 11.53 2.56 44.17 0.11 11.64 16 10 H -0.03 -1.81 7.57 -2.39 -0.02 -1.83 16 11 C -0.11 -5.79 9.19 71.98 0.66 -5.13 16 12 C -0.54 -30.43 8.59 25.60 0.22 -30.21 16 13 H 0.06 3.26 7.62 -2.91 -0.02 3.23 16 14 C 0.01 0.69 5.30 84.65 0.45 1.13 16 15 N -0.92 -53.86 11.32 21.45 0.24 -53.62 16 16 Si 0.97 43.93 29.54 68.60 2.03 45.96 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 21 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 22 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.06 1.69 7.88 -2.39 -0.02 1.67 16 24 H 0.05 1.53 7.33 -2.38 -0.02 1.51 16 25 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 26 H 0.09 2.82 8.03 -2.38 -0.02 2.80 16 27 H 0.33 14.46 6.55 -89.69 -0.59 13.87 16 28 H 0.02 0.96 8.07 -2.39 -0.02 0.94 16 29 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 3.25 6.07 -2.38 -0.01 3.24 16 31 H 0.26 14.54 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -60.16 255.03 2.59 -57.57 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.50 Total: 17.99 kcal Atomic # 6 Polarization: -38.62 SS G_CDS: 2.83 Total: -35.78 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -2.77 Total: -85.73 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -60.16 2.59 -57.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300357910.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.598 kcal (2) G-P(sol) polarization free energy of solvation -60.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds