Wall clock time and date at job start Mon Mar 30 2020 01:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47022 * 2 1 4 4 C 1.53000 * 109.47022 * 180.02562 * 3 2 1 5 5 H 1.09006 * 115.55223 * 29.32827 * 4 3 2 6 6 C 1.53076 * 117.51567 * 243.60588 * 4 3 2 7 7 C 1.52997 * 59.98675 * 252.52268 * 6 4 3 8 8 H 1.09001 * 117.49563 * 252.50048 * 7 6 4 9 9 N 1.46898 * 117.49991 * 107.49761 * 7 6 4 10 10 C 1.46903 * 110.99849 * 136.25441 * 9 7 6 11 11 C 1.50694 * 109.47066 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 H 1.08999 * 109.47374 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.47026 * 300.00245 * 1 2 3 21 21 H 1.09000 * 109.47427 * 59.99792 * 1 2 3 22 22 H 1.08992 * 109.46998 * 239.99828 * 2 1 3 23 23 H 1.09003 * 109.47075 * 119.99539 * 2 1 3 24 24 H 1.08999 * 109.47331 * 59.99641 * 3 2 1 25 25 H 1.09002 * 109.47562 * 299.99688 * 3 2 1 26 26 H 1.09002 * 117.49669 * 145.03508 * 6 4 3 27 27 H 1.09002 * 117.50787 * 0.02562 * 6 4 3 28 28 H 1.00899 * 111.00040 * 12.30022 * 9 7 6 29 29 H 1.09007 * 109.47052 * 59.99769 * 10 9 7 30 30 H 1.09003 * 109.46808 * 300.00462 * 10 9 7 31 31 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 4.0399 0.5852 -0.4827 6 6 4.2777 2.0458 1.2152 7 6 4.2764 2.7945 -0.1190 8 1 5.2111 2.8266 -0.6789 9 7 3.4337 3.9932 -0.2234 10 6 4.1503 5.0833 -0.8989 11 6 3.2566 6.2934 -0.9866 12 1 2.2561 6.2564 -0.5816 13 6 3.7157 7.4476 -1.5850 14 7 4.9339 7.4926 -2.0787 15 14 2.6075 8.9474 -1.6945 16 1 3.3320 10.0494 -2.3772 17 1 1.3858 8.6049 -2.4660 18 1 2.2241 9.3804 -0.3268 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 1.6766 1.9564 0.8899 25 1 1.6767 1.9564 -0.8900 26 1 5.2130 1.5851 1.5330 27 1 3.6532 2.4424 2.0158 28 1 3.1054 4.2847 0.6851 29 1 4.4322 4.7656 -1.9028 30 1 5.0470 5.3345 -0.3322 31 1 5.2567 8.3045 -2.5000 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300375315.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:48 Heat of formation + Delta-G solvation = -0.593047 kcal Electronic energy + Delta-G solvation = -10813.733212 eV Core-core repulsion = 8901.895719 eV Total energy + Delta-G solvation = -1911.837493 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.91205 -34.37343 -33.14774 -31.30470 -27.05795 -26.01084 -21.92284 -21.60172 -21.04939 -19.30817 -16.36454 -15.40051 -14.80070 -14.49914 -14.25452 -13.27393 -13.11392 -12.51886 -12.19205 -11.95755 -11.75881 -11.30398 -11.06063 -10.80191 -10.76276 -10.59516 -10.55741 -10.02768 -9.87370 -9.44914 -9.04378 -8.45881 -7.13592 -6.02960 -4.05110 3.34108 3.37756 3.41010 4.31513 4.43137 4.97540 5.07588 5.22460 5.32868 5.36262 5.42882 5.58551 5.81838 5.84083 5.99540 6.04078 6.15975 6.20018 6.23856 6.43591 6.47338 6.61826 6.84813 7.27199 7.43264 7.79263 8.13715 8.39426 8.61151 9.03817 9.59661 11.08182 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.050903 B = 0.007969 C = 0.007164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.937963 B = 3512.661569 C = 3907.612125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.076 4.076 4 C -0.152 4.152 5 H 0.094 0.906 6 C -0.214 4.214 7 C 0.040 3.960 8 H 0.099 0.901 9 N -0.655 5.655 10 C 0.195 3.805 11 C -0.516 4.516 12 H 0.062 0.938 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.900 3.100 16 H -0.287 1.287 17 H -0.276 1.276 18 H -0.277 1.277 19 H 0.047 0.953 20 H 0.052 0.948 21 H 0.054 0.946 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.330 0.670 29 H 0.029 0.971 30 H -0.012 1.012 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.108 -11.253 4.568 12.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.113 4.113 4 C -0.171 4.171 5 H 0.112 0.888 6 C -0.253 4.253 7 C -0.072 4.072 8 H 0.117 0.883 9 N -0.283 5.283 10 C 0.068 3.932 11 C -0.555 4.555 12 H 0.080 0.920 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.728 3.272 16 H -0.213 1.213 17 H -0.201 1.201 18 H -0.203 1.203 19 H 0.066 0.934 20 H 0.071 0.929 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.102 0.898 27 H 0.108 0.892 28 H 0.149 0.851 29 H 0.047 0.953 30 H 0.006 0.994 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.301 -11.295 3.881 12.694 hybrid contribution 0.215 1.075 0.598 1.248 sum -4.086 -10.221 4.479 11.884 Atomic orbital electron populations 1.21773 0.96341 1.00878 1.01930 1.21549 0.95367 0.97796 1.01266 1.20958 0.92470 0.95151 1.02734 1.22573 0.95292 0.97593 1.01677 0.88781 1.23535 1.02194 1.06990 0.92576 1.22552 0.96782 0.90482 0.97419 0.88268 1.60359 1.38042 1.05480 1.24447 1.19607 0.92434 0.87295 0.93833 1.21147 1.00178 0.96134 1.38022 0.92017 1.24987 0.95195 0.98899 0.95443 1.69956 1.16395 1.28304 1.39074 0.86530 0.80535 0.81917 0.78231 1.21310 1.20142 1.20266 0.93375 0.92919 0.92640 0.92474 0.92648 0.92364 0.90760 0.89813 0.89241 0.85142 0.95284 0.99403 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.16 0.37 -1.31 16 2 C -0.12 -1.48 5.89 -26.73 -0.16 -1.64 16 3 C -0.08 -1.12 4.95 -26.73 -0.13 -1.25 16 4 C -0.15 -2.35 5.74 -90.58 -0.52 -2.87 16 5 H 0.09 1.34 8.08 -51.93 -0.42 0.92 16 6 C -0.21 -3.28 9.88 -26.69 -0.26 -3.54 16 7 C 0.04 0.74 6.29 -67.71 -0.43 0.31 16 8 H 0.10 1.90 7.90 -51.93 -0.41 1.49 16 9 N -0.65 -14.37 6.14 -107.99 -0.66 -15.03 16 10 C 0.19 5.20 5.29 -4.98 -0.03 5.17 16 11 C -0.52 -14.82 9.32 -34.44 -0.32 -15.14 16 12 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 15 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 19 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 20 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.88 7.88 -51.93 -0.41 0.47 16 25 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.09 1.34 7.98 -51.93 -0.41 0.93 16 28 H 0.33 6.98 8.51 -39.29 -0.33 6.64 16 29 H 0.03 0.83 8.14 -51.92 -0.42 0.41 16 30 H -0.01 -0.33 8.14 -51.93 -0.42 -0.76 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 262.75 15.07 3.96 3.96 Total: -1.00 -29.35 262.75 -7.90 -37.25 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -5.34 Total: 2.07 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -1.58 Total: -18.74 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.07 Total: -41.38 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.35 -7.90 -37.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300375315.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.656 kcal (2) G-P(sol) polarization free energy of solvation -29.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds