Wall clock time and date at job start Mon Mar 30 2020 01:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.50380 * 2 1 4 4 C 1.50697 * 109.46950 * 60.07793 * 3 2 1 5 5 H 1.08003 * 120.00028 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00211 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99686 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 120.00493 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.46913 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.47041 * 120.00158 * 8 6 4 11 11 H 1.48494 * 109.47225 * 240.00699 * 8 6 4 12 12 C 1.53124 * 109.50300 * 239.88380 * 2 1 3 13 13 C 1.53123 * 109.15980 * 297.71055 * 12 2 1 14 14 C 1.53036 * 109.27788 * 302.34618 * 13 12 2 15 15 N 1.46846 * 109.52384 * 59.18000 * 14 13 12 16 16 C 1.46842 * 111.19700 * 298.25435 * 15 14 13 17 17 H 1.09002 * 109.46975 * 299.91576 * 1 2 3 18 18 H 1.08995 * 109.47002 * 59.91982 * 1 2 3 19 19 H 1.09005 * 109.47024 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47099 * 180.08349 * 3 2 1 21 21 H 1.09004 * 109.47249 * 300.08062 * 3 2 1 22 22 H 0.96998 * 120.00317 * 179.97438 * 7 6 4 23 23 H 1.09000 * 109.52368 * 177.80691 * 12 2 1 24 24 H 1.08997 * 109.52219 * 57.61567 * 12 2 1 25 25 H 1.09000 * 109.50367 * 182.40163 * 13 12 2 26 26 H 1.09006 * 109.50264 * 62.28502 * 13 12 2 27 27 H 1.08999 * 109.46075 * 179.19317 * 14 13 12 28 28 H 1.08998 * 109.46309 * 299.16289 * 14 13 12 29 29 H 1.00903 * 111.00200 * 174.15923 * 15 14 13 30 30 H 1.09006 * 109.46447 * 181.75636 * 16 15 14 31 31 H 1.08994 * 109.46873 * 301.72670 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4422 0.0000 4 6 1.5405 2.1523 1.2314 5 1 0.9205 1.6273 1.9431 6 6 1.8750 3.4719 1.4501 7 7 2.6303 4.1110 0.5837 8 14 1.2554 4.3519 2.9768 9 1 0.4313 3.4185 3.7861 10 1 2.4120 4.8171 3.7837 11 1 0.4307 5.5195 2.5748 12 6 2.0412 -0.7242 -1.2485 13 6 1.5750 -2.1822 -1.2100 14 6 2.0847 -2.8420 0.0733 15 7 1.5676 -2.1131 1.2386 16 6 2.0410 -0.7231 1.2483 17 1 -0.3633 0.5125 0.8908 18 1 -0.3633 0.5151 -0.8892 19 1 -0.3633 -1.0277 -0.0005 20 1 3.1308 1.4416 -0.0015 21 1 1.6766 1.9567 -0.8893 22 1 2.8654 5.0395 0.7373 23 1 3.1305 -0.6905 -1.2688 24 1 1.6442 -0.2382 -2.1397 25 1 1.9715 -2.7141 -2.0749 26 1 0.4857 -2.2166 -1.2290 27 1 1.7424 -3.8761 0.1107 28 1 3.1744 -2.8196 0.0852 29 1 1.8113 -2.5840 2.0970 30 1 1.6670 -0.2182 2.1390 31 1 3.1309 -0.7105 1.2546 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306195540.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:33 Heat of formation + Delta-G solvation = -23.780263 kcal Electronic energy + Delta-G solvation = -11702.119434 eV Core-core repulsion = 9789.276468 eV Total energy + Delta-G solvation = -1912.842966 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.67017 -33.85350 -32.00992 -30.96089 -26.87323 -26.04265 -23.37565 -22.99843 -20.53322 -17.59482 -16.16479 -15.87903 -14.39921 -14.19591 -13.67288 -13.48148 -12.95033 -12.71043 -12.10217 -11.86614 -11.20050 -11.12089 -10.76299 -10.71430 -10.57492 -10.33035 -10.06913 -9.87356 -9.62923 -8.90483 -8.70490 -8.30715 -7.91517 -5.94699 -3.95173 3.33432 3.41303 3.45172 4.50022 4.72518 5.34551 5.40466 5.41358 5.56376 5.82796 5.93355 6.07433 6.14243 6.27357 6.41979 6.52802 6.57393 6.66430 6.74912 6.86605 7.15220 7.26299 7.34883 7.60056 7.72154 7.81294 7.94107 8.06371 8.50002 9.10904 9.67919 11.16841 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.064777 B = 0.011548 C = 0.010825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.145629 B = 2424.116609 C = 2585.930370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.052 4.052 3 C 0.032 3.968 4 C -0.508 4.508 5 H 0.060 0.940 6 C 0.054 3.946 7 N -0.897 5.897 8 Si 0.887 3.113 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 C -0.112 4.112 13 C -0.118 4.118 14 C 0.061 3.939 15 N -0.692 5.692 16 C 0.077 3.923 17 H 0.056 0.944 18 H 0.035 0.965 19 H 0.045 0.955 20 H 0.012 0.988 21 H 0.017 0.983 22 H 0.258 0.742 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.021 0.979 29 H 0.331 0.669 30 H 0.082 0.918 31 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.307 -10.494 -0.772 10.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.052 4.052 3 C -0.006 4.006 4 C -0.547 4.547 5 H 0.078 0.922 6 C -0.146 4.146 7 N -0.537 5.537 8 Si 0.715 3.285 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.211 1.211 12 C -0.150 4.150 13 C -0.155 4.155 14 C -0.069 4.069 15 N -0.322 5.322 16 C -0.051 4.051 17 H 0.075 0.925 18 H 0.054 0.946 19 H 0.064 0.936 20 H 0.030 0.970 21 H 0.035 0.965 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.040 0.960 29 H 0.148 0.852 30 H 0.101 0.899 31 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -1.823 -10.169 -1.108 10.390 hybrid contribution 0.766 0.553 1.051 1.413 sum -1.057 -9.616 -0.057 9.674 Atomic orbital electron populations 1.21640 0.95084 0.99647 1.01079 1.20611 0.95816 0.97074 0.91717 1.19151 0.95871 0.88364 0.97178 1.21318 1.30730 0.95926 1.06702 0.92208 1.25028 0.95382 0.97753 0.96443 1.69980 1.37348 1.10726 1.35665 0.86611 0.78583 0.79791 0.83486 1.19726 1.21217 1.21147 1.21692 0.99799 0.94426 0.99084 1.21626 1.01574 0.96554 0.95771 1.21846 0.96326 0.96723 0.91993 1.60362 1.63756 1.03804 1.04266 1.21981 0.96250 0.86539 1.00363 0.92454 0.94573 0.93589 0.96965 0.96465 0.93229 0.93095 0.92476 0.92852 0.91238 0.91983 0.96037 0.85218 0.89918 0.96172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 7.78 37.16 0.29 -2.08 16 2 C -0.05 -1.08 0.53 -154.42 -0.08 -1.16 16 3 C 0.03 0.82 4.05 -27.88 -0.11 0.71 16 4 C -0.51 -14.08 7.66 -34.44 -0.26 -14.35 16 5 H 0.06 1.62 5.68 -52.48 -0.30 1.32 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 8 Si 0.89 21.75 29.54 -169.99 -5.02 16.72 16 9 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 C -0.11 -2.05 4.79 -26.60 -0.13 -2.18 16 13 C -0.12 -1.79 5.74 -26.65 -0.15 -1.94 16 14 C 0.06 0.89 6.55 -3.83 -0.03 0.86 16 15 N -0.69 -11.20 6.13 -113.82 -0.70 -11.90 16 16 C 0.08 1.50 5.00 -3.83 -0.02 1.49 16 17 H 0.06 1.24 6.63 -51.93 -0.34 0.89 16 18 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 19 H 0.05 0.85 6.01 -51.93 -0.31 0.54 16 20 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 21 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 22 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 1.08 6.58 -51.93 -0.34 0.74 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.33 4.63 8.90 -39.29 -0.35 4.28 16 30 H 0.08 1.74 6.65 -51.93 -0.35 1.40 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 239.87 15.07 3.61 3.61 Total: -1.00 -29.38 239.87 -6.89 -36.27 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -4.93 Total: -1.17 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -0.59 Total: -17.19 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.04 Total: -38.24 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -29.38 -6.89 -36.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306195540.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.487 kcal (2) G-P(sol) polarization free energy of solvation -29.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds