Wall clock time and date at job start Mon Mar 30 2020 02:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47486 * 2 1 4 4 C 1.50697 * 109.47281 * 239.99750 * 2 1 3 5 5 H 1.08010 * 120.00320 * 240.00031 * 4 2 1 6 6 C 1.37875 * 120.00123 * 59.99964 * 4 2 1 7 7 N 1.31512 * 119.99940 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00201 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46518 * 90.00515 * 8 6 4 10 10 H 1.48495 * 109.47493 * 209.99915 * 8 6 4 11 11 H 1.48494 * 109.47379 * 330.00647 * 8 6 4 12 12 N 1.46904 * 109.47018 * 119.99740 * 2 1 3 13 13 C 1.46897 * 111.00156 * 275.00103 * 12 2 1 14 14 H 1.08996 * 112.84816 * 333.31074 * 13 12 2 15 15 C 1.53781 * 113.61485 * 104.50225 * 13 12 2 16 16 C 1.53781 * 87.08070 * 139.98212 * 15 13 12 17 17 C 1.53786 * 87.17350 * 334.52830 * 16 15 13 18 18 H 1.08992 * 113.61675 * 140.02412 * 17 16 15 19 19 C 1.53001 * 113.61045 * 270.92516 * 17 16 15 20 20 H 1.09004 * 109.47372 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47500 * 299.99995 * 1 2 3 22 22 H 1.09002 * 109.47086 * 59.99996 * 1 2 3 23 23 H 0.96999 * 119.99951 * 179.97438 * 7 6 4 24 24 H 1.00902 * 111.00215 * 151.04399 * 12 2 1 25 25 H 1.08999 * 113.61181 * 25.43268 * 15 13 12 26 26 H 1.09000 * 113.69133 * 254.54095 * 15 13 12 27 27 H 1.09002 * 113.61445 * 89.11830 * 16 15 13 28 28 H 1.09002 * 113.61408 * 219.93560 * 16 15 13 29 29 H 1.09004 * 109.47460 * 40.49505 * 19 17 16 30 30 H 1.08998 * 109.46938 * 160.49579 * 19 17 16 31 31 H 1.08995 * 109.47558 * 280.49569 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4122 10 1 2.4873 -0.1405 -5.1120 11 1 3.6308 -1.7568 -3.7119 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 1 2.2185 1.2630 2.0516 15 6 0.9476 0.0144 3.3637 16 6 1.9977 0.2426 4.4638 17 6 3.0511 -0.2389 3.4522 18 1 3.9804 0.3296 3.4856 19 6 3.2773 -1.7519 3.4763 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.7096 1.1616 -3.4844 24 1 2.9172 -1.1205 1.0288 25 1 0.5348 -0.9944 3.3567 26 1 0.1792 0.7865 3.3267 27 1 2.1116 1.2886 4.7484 28 1 1.8818 -0.4193 5.3221 29 1 2.3199 -2.2607 3.5888 30 1 3.7472 -2.0639 2.5436 31 1 3.9260 -2.0090 4.3137 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306299592.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:47 Heat of formation + Delta-G solvation = 7.638919 kcal Electronic energy + Delta-G solvation = -11444.774933 eV Core-core repulsion = 9533.294405 eV Total energy + Delta-G solvation = -1911.480528 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.91532 -34.70176 -31.78610 -28.99813 -27.94417 -25.16871 -23.37841 -23.12035 -19.77588 -18.01670 -16.37144 -15.62592 -14.80004 -14.48153 -13.85557 -12.82427 -12.54115 -12.39480 -11.92988 -11.82066 -11.29928 -11.02058 -10.95805 -10.77488 -10.43721 -10.38886 -10.11831 -9.98966 -9.70478 -9.40338 -8.72030 -8.43012 -7.20362 -5.99106 -4.05532 3.31343 3.37534 3.40570 4.42674 4.96008 5.03752 5.14790 5.31966 5.45678 5.68419 5.82946 5.98965 6.02779 6.13011 6.18834 6.29830 6.45051 6.59835 6.84188 6.87583 6.99067 7.23105 7.31968 7.60031 7.82615 7.96302 8.33117 8.48440 8.75564 9.06660 9.60342 11.07029 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.066688 B = 0.010325 C = 0.009412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.762946 B = 2711.241176 C = 2974.209237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.210 3.790 3 H -0.001 1.001 4 C -0.518 4.518 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.675 5.675 13 C 0.068 3.932 14 H 0.059 0.941 15 C -0.124 4.124 16 C -0.140 4.140 17 C -0.120 4.120 18 H 0.064 0.936 19 C -0.122 4.122 20 H 0.029 0.971 21 H 0.005 0.995 22 H 0.078 0.922 23 H 0.260 0.740 24 H 0.331 0.669 25 H 0.083 0.917 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.455 -1.515 9.553 9.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.102 3.898 3 H 0.017 0.983 4 C -0.556 4.556 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.306 5.306 13 C -0.043 4.043 14 H 0.077 0.923 15 C -0.162 4.162 16 C -0.178 4.178 17 C -0.139 4.139 18 H 0.083 0.917 19 C -0.180 4.180 20 H 0.048 0.952 21 H 0.024 0.976 22 H 0.096 0.904 23 H 0.070 0.930 24 H 0.150 0.850 25 H 0.102 0.898 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.758 -1.645 9.553 9.852 hybrid contribution 0.999 0.215 -1.155 1.542 sum 2.757 -1.431 8.398 8.954 Atomic orbital electron populations 1.21681 0.97935 0.99146 0.99247 1.19168 0.92683 0.92144 0.85807 0.98324 1.21300 1.31300 1.12413 0.90605 0.92334 1.24926 0.95117 0.95006 0.99022 1.69904 1.36787 1.22885 1.23351 0.86538 0.79196 0.79328 0.82555 1.20654 1.21313 1.19972 1.60868 1.31564 1.32301 1.05895 1.23033 0.95098 0.95377 0.90804 0.92309 1.22992 0.96384 1.01788 0.95084 1.22839 0.97831 1.00408 0.96753 1.22658 0.97074 0.96961 0.97243 0.91733 1.21400 1.01636 0.94018 1.00920 0.95183 0.97599 0.90381 0.92997 0.85013 0.89797 0.92649 0.90965 0.91937 0.92065 0.92110 0.93692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.12 9.19 37.15 0.34 -2.78 16 2 C 0.21 5.45 2.60 -68.87 -0.18 5.27 16 3 H 0.00 -0.02 7.47 -51.93 -0.39 -0.41 16 4 C -0.52 -14.46 8.59 -34.44 -0.30 -14.76 16 5 H 0.06 1.61 7.62 -52.48 -0.40 1.21 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.89 11.32 55.43 0.63 -25.26 16 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.52 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.67 -14.69 5.81 -99.96 -0.58 -15.27 16 13 C 0.07 1.27 3.83 -66.76 -0.26 1.01 16 14 H 0.06 1.18 7.51 -51.93 -0.39 0.79 16 15 C -0.12 -2.06 7.28 -25.92 -0.19 -2.25 16 16 C -0.14 -1.94 7.65 -25.92 -0.20 -2.14 16 17 C -0.12 -1.83 4.45 -89.66 -0.40 -2.23 16 18 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 19 C -0.12 -1.74 8.91 37.16 0.33 -1.41 16 20 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 21 H 0.00 0.12 7.82 -51.93 -0.41 -0.29 16 22 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.33 7.06 6.66 -39.29 -0.26 6.80 16 25 H 0.08 1.44 7.63 -51.93 -0.40 1.04 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 29 H 0.06 0.90 7.32 -51.93 -0.38 0.52 16 30 H 0.06 0.90 6.94 -51.93 -0.36 0.54 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 247.95 15.07 3.74 3.74 Total: -1.00 -28.41 247.95 -7.14 -35.56 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -4.97 Total: 2.37 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -0.94 Total: -17.66 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.05 Total: -40.53 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -28.41 -7.14 -35.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306299592.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.196 kcal (2) G-P(sol) polarization free energy of solvation -28.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds