Wall clock time and date at job start Mon Mar 30 2020 02:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47486 * 2 1 4 4 C 1.50697 * 109.47281 * 239.99750 * 2 1 3 5 5 H 1.08010 * 120.00320 * 240.00031 * 4 2 1 6 6 C 1.37875 * 120.00123 * 59.99964 * 4 2 1 7 7 N 1.31512 * 119.99940 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00201 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46518 * 90.00515 * 8 6 4 10 10 H 1.48495 * 109.47493 * 209.99915 * 8 6 4 11 11 H 1.48494 * 109.47379 * 330.00647 * 8 6 4 12 12 N 1.46904 * 109.47018 * 119.99740 * 2 1 3 13 13 C 1.46897 * 111.00156 * 275.00103 * 12 2 1 14 14 H 1.08996 * 112.84816 * 333.31074 * 13 12 2 15 15 C 1.53781 * 113.61485 * 104.50225 * 13 12 2 16 16 C 1.53781 * 87.08070 * 139.98212 * 15 13 12 17 17 C 1.53786 * 87.17350 * 334.52830 * 16 15 13 18 18 H 1.08992 * 113.61675 * 140.02412 * 17 16 15 19 19 C 1.53001 * 113.61045 * 270.92516 * 17 16 15 20 20 H 1.09004 * 109.47372 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47500 * 299.99995 * 1 2 3 22 22 H 1.09002 * 109.47086 * 59.99996 * 1 2 3 23 23 H 0.96999 * 119.99951 * 179.97438 * 7 6 4 24 24 H 1.00902 * 111.00215 * 151.04399 * 12 2 1 25 25 H 1.08999 * 113.61181 * 25.43268 * 15 13 12 26 26 H 1.09000 * 113.69133 * 254.54095 * 15 13 12 27 27 H 1.09002 * 113.61445 * 89.11830 * 16 15 13 28 28 H 1.09002 * 113.61408 * 219.93560 * 16 15 13 29 29 H 1.09004 * 109.47460 * 40.49505 * 19 17 16 30 30 H 1.08998 * 109.46938 * 160.49579 * 19 17 16 31 31 H 1.08995 * 109.47558 * 280.49569 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4122 10 1 2.4873 -0.1405 -5.1120 11 1 3.6308 -1.7568 -3.7119 12 7 2.0196 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 1 2.2185 1.2630 2.0516 15 6 0.9476 0.0144 3.3637 16 6 1.9977 0.2426 4.4638 17 6 3.0511 -0.2389 3.4522 18 1 3.9804 0.3296 3.4856 19 6 3.2773 -1.7519 3.4763 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.7096 1.1616 -3.4844 24 1 2.9172 -1.1205 1.0288 25 1 0.5348 -0.9944 3.3567 26 1 0.1792 0.7865 3.3267 27 1 2.1116 1.2886 4.7484 28 1 1.8818 -0.4193 5.3221 29 1 2.3199 -2.2607 3.5888 30 1 3.7472 -2.0639 2.5436 31 1 3.9260 -2.0090 4.3137 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306299592.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:47 Heat of formation + Delta-G solvation = -9.871401 kcal Electronic energy + Delta-G solvation = -11445.534238 eV Core-core repulsion = 9533.294405 eV Total energy + Delta-G solvation = -1912.239833 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.29072 -36.64172 -33.79674 -30.23316 -29.82492 -27.29973 -24.78304 -24.47026 -21.77003 -19.48112 -18.30503 -17.07003 -16.69573 -16.06382 -15.63524 -14.52689 -14.23690 -13.92473 -13.29659 -13.11046 -13.01436 -12.87416 -12.71646 -12.49139 -12.22663 -12.13625 -12.09033 -11.46480 -11.19007 -10.90778 -10.67224 -10.55305 -9.01591 -8.13507 -6.28361 1.41245 1.42247 1.52565 2.40878 3.14355 3.64475 3.72631 3.83948 4.11988 4.18678 4.63867 4.71403 4.82478 4.84627 4.89000 5.04955 5.07353 5.15390 5.17132 5.23603 5.36922 5.47191 5.57353 5.62893 5.74184 5.87956 6.22658 6.51991 6.82981 7.03575 7.42467 8.92036 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.066688 B = 0.010325 C = 0.009412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.762946 B = 2711.241176 C = 2974.209237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.214 3.786 3 H -0.037 1.037 4 C -0.538 4.538 5 H 0.059 0.941 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.266 1.266 12 N -0.669 5.669 13 C 0.046 3.954 14 H 0.038 0.962 15 C -0.125 4.125 16 C -0.121 4.121 17 C -0.112 4.112 18 H 0.074 0.926 19 C -0.120 4.120 20 H 0.026 0.974 21 H 0.020 0.980 22 H 0.053 0.947 23 H 0.262 0.738 24 H 0.331 0.669 25 H 0.079 0.921 26 H 0.051 0.949 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.177 -2.386 10.519 11.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.105 3.895 3 H -0.019 1.019 4 C -0.577 4.577 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.790 3.210 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.191 1.191 12 N -0.300 5.300 13 C -0.064 4.064 14 H 0.056 0.944 15 C -0.163 4.163 16 C -0.159 4.159 17 C -0.131 4.131 18 H 0.092 0.908 19 C -0.177 4.177 20 H 0.045 0.955 21 H 0.039 0.961 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.150 0.850 25 H 0.098 0.902 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.483 -2.520 10.543 11.121 hybrid contribution 0.767 0.520 -1.420 1.696 sum 3.250 -2.000 9.123 9.889 Atomic orbital electron populations 1.21487 0.97817 0.98593 0.98752 1.18972 0.92767 0.90408 0.87318 1.01945 1.21626 1.31645 1.12657 0.91724 0.92279 1.25779 0.95198 0.95691 1.02167 1.70037 1.37592 1.24100 1.24137 0.85463 0.78889 0.78170 0.78528 1.20097 1.20871 1.19083 1.60825 1.31619 1.32471 1.05088 1.23254 0.98596 0.93894 0.90687 0.94380 1.22973 0.96348 1.01417 0.95570 1.22771 0.95031 1.01752 0.96323 1.22662 0.97149 0.97822 0.95458 0.90807 1.21392 1.01817 0.92991 1.01527 0.95523 0.96115 0.92780 0.92866 0.84988 0.90238 0.93013 0.89638 0.89594 0.92673 0.93211 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.64 9.19 71.98 0.66 -4.98 16 2 C 0.21 11.38 2.60 44.17 0.11 11.49 16 3 H -0.04 -2.19 7.47 -2.39 -0.02 -2.21 16 4 C -0.54 -30.39 8.59 25.60 0.22 -30.17 16 5 H 0.06 3.25 7.62 -2.91 -0.02 3.23 16 6 C 0.01 0.60 5.30 84.65 0.45 1.05 16 7 N -0.92 -54.28 11.32 21.45 0.24 -54.04 16 8 Si 0.96 44.17 29.54 68.60 2.03 46.19 16 9 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 N -0.67 -29.28 5.81 -470.17 -2.73 -32.01 16 13 C 0.05 1.71 3.83 45.53 0.17 1.89 16 14 H 0.04 1.57 7.51 -2.39 -0.02 1.55 16 15 C -0.12 -3.96 7.28 31.12 0.23 -3.74 16 16 C -0.12 -2.99 7.65 31.12 0.24 -2.75 16 17 C -0.11 -3.16 4.45 -10.17 -0.05 -3.20 16 18 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 19 C -0.12 -3.11 8.91 71.98 0.64 -2.47 16 20 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 21 H 0.02 0.96 7.82 -2.39 -0.02 0.94 16 22 H 0.05 3.07 6.07 -2.39 -0.01 3.06 16 23 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 24 H 0.33 14.18 6.66 -89.69 -0.60 13.59 16 25 H 0.08 2.60 7.63 -2.39 -0.02 2.59 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 27 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.09 1.78 8.10 -2.39 -0.02 1.76 16 29 H 0.05 1.50 7.32 -2.39 -0.02 1.48 16 30 H 0.05 1.39 6.94 -2.39 -0.02 1.38 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -60.59 247.95 2.71 -57.88 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.49 Total: 14.86 kcal Atomic # 6 Polarization: -35.56 SS G_CDS: 2.68 Total: -32.88 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -2.49 Total: -86.05 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -60.59 2.71 -57.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306299592.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.005 kcal (2) G-P(sol) polarization free energy of solvation -60.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds