Wall clock time and date at job start Mon Mar 30 2020 02:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47542 * 2 1 4 4 H 1.08996 * 112.74528 * 314.73871 * 3 2 1 5 5 C 1.53519 * 113.52577 * 85.55147 * 3 2 1 6 6 C 1.53516 * 83.57376 * 140.80026 * 5 3 2 7 7 N 1.47484 * 113.47632 * 183.95736 * 3 2 1 8 8 C 1.46896 * 110.99624 * 106.47111 * 7 3 2 9 9 H 1.09008 * 109.47034 * 42.84699 * 8 7 3 10 10 C 1.52993 * 109.47477 * 282.84379 * 8 7 3 11 11 C 1.50695 * 109.47050 * 162.84278 * 8 7 3 12 12 H 1.08000 * 120.00087 * 359.97438 * 11 8 7 13 13 C 1.37885 * 120.00137 * 180.02562 * 11 8 7 14 14 N 1.31514 * 119.99759 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 119.99811 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.46704 * 90.00426 * 15 13 11 17 17 H 1.48502 * 109.46679 * 210.00007 * 15 13 11 18 18 H 1.48492 * 109.47293 * 329.99901 * 15 13 11 19 19 H 1.09003 * 109.46609 * 64.70184 * 1 2 3 20 20 H 1.08989 * 109.47619 * 184.70252 * 1 2 3 21 21 H 1.09006 * 109.46824 * 304.70681 * 1 2 3 22 22 H 1.09002 * 109.47004 * 239.99997 * 2 1 3 23 23 H 1.09006 * 109.47032 * 120.00300 * 2 1 3 24 24 H 1.09001 * 114.17526 * 27.15704 * 5 3 2 25 25 H 1.08994 * 114.17145 * 254.44715 * 5 3 2 26 26 H 1.08993 * 113.48234 * 219.20909 * 6 5 3 27 27 H 1.09001 * 113.47928 * 88.73571 * 6 5 3 28 28 H 1.08993 * 109.47325 * 294.54329 * 10 8 7 29 29 H 1.09004 * 109.46910 * 54.54159 * 10 8 7 30 30 H 1.09000 * 109.47650 * 174.53399 * 10 8 7 31 31 H 0.96999 * 119.99606 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5136 2.0757 -0.7140 5 6 2.1415 2.0566 1.4033 6 6 3.4323 2.6771 0.8506 7 7 3.5083 1.5464 -0.0934 8 6 3.9199 2.0016 -1.4280 9 1 3.2660 2.8107 -1.7537 10 6 3.8224 0.8378 -2.4163 11 6 5.3423 2.4964 -1.3734 12 1 5.8860 2.4753 -0.4405 13 6 5.9493 2.9771 -2.5144 14 7 5.2867 3.0042 -3.6501 15 14 7.7127 3.5897 -2.4468 16 1 8.6390 2.4635 -2.7276 17 1 7.9059 4.6548 -3.4634 18 1 7.9949 4.1378 -1.0959 19 1 -0.3633 0.4392 -0.9292 20 1 -0.3634 -1.0241 0.0842 21 1 -0.3633 0.5852 0.8449 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 2.3013 1.3286 2.1987 25 1 1.3598 2.7813 1.6309 26 1 4.2488 2.6958 1.5723 27 1 3.2774 3.6397 0.3634 28 1 4.5464 0.0694 -2.1455 29 1 2.8172 0.4173 -2.3844 30 1 4.0338 1.1975 -3.4233 31 1 5.7136 3.3427 -4.4526 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306948483.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:34 Heat of formation + Delta-G solvation = 1.266156 kcal Electronic energy + Delta-G solvation = -11572.440640 eV Core-core repulsion = 9660.683768 eV Total energy + Delta-G solvation = -1911.756872 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.00074 -35.75249 -33.78718 -32.37888 -27.66755 -27.52793 -26.18550 -22.83678 -22.04096 -20.40877 -18.39943 -17.21286 -16.08020 -15.96567 -15.47679 -14.88978 -14.56403 -13.80027 -13.52907 -13.34023 -12.97059 -12.79624 -12.62250 -12.53082 -12.38959 -12.17194 -11.83586 -11.75131 -11.30423 -10.91903 -10.80027 -10.56347 -9.47609 -8.15428 -6.28131 1.38580 1.39580 1.50158 2.39144 3.12285 3.39324 3.67182 4.03772 4.34364 4.46223 4.54885 4.59335 4.68112 4.78022 4.85213 4.90231 5.01510 5.06271 5.09479 5.23435 5.32272 5.36459 5.37578 5.48063 5.64184 5.70299 6.06138 6.27906 6.59415 6.85677 7.41066 8.90746 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.064619 B = 0.011430 C = 0.010251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.204940 B = 2449.026752 C = 2730.683444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 C 0.020 3.980 4 H 0.051 0.949 5 C -0.120 4.120 6 C 0.006 3.994 7 N -0.483 5.483 8 C 0.185 3.815 9 H -0.030 1.030 10 C -0.112 4.112 11 C -0.523 4.523 12 H 0.052 0.948 13 C 0.010 3.990 14 N -0.920 5.920 15 Si 0.962 3.038 16 H -0.275 1.275 17 H -0.281 1.281 18 H -0.269 1.269 19 H 0.045 0.955 20 H 0.068 0.932 21 H 0.065 0.935 22 H 0.044 0.956 23 H 0.070 0.930 24 H 0.102 0.898 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.044 0.956 28 H 0.025 0.975 29 H 0.029 0.971 30 H 0.055 0.945 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.012 -2.673 7.422 10.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.139 4.139 3 C -0.090 4.090 4 H 0.069 0.931 5 C -0.157 4.157 6 C -0.123 4.123 7 N -0.206 5.206 8 C 0.077 3.923 9 H -0.012 1.012 10 C -0.170 4.170 11 C -0.562 4.562 12 H 0.070 0.930 13 C -0.188 4.188 14 N -0.560 5.560 15 Si 0.787 3.213 16 H -0.201 1.201 17 H -0.206 1.206 18 H -0.194 1.194 19 H 0.064 0.936 20 H 0.087 0.913 21 H 0.085 0.915 22 H 0.063 0.937 23 H 0.088 0.912 24 H 0.121 0.879 25 H 0.107 0.893 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.044 0.956 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.533 -3.194 7.332 10.327 hybrid contribution 0.668 1.199 -0.871 1.625 sum -5.865 -1.995 6.461 8.951 Atomic orbital electron populations 1.21679 0.93955 1.02381 1.01847 1.21388 0.96539 0.94310 1.01691 1.23426 0.90575 0.97761 0.97229 0.93117 1.23207 0.96517 1.00058 0.95933 1.23410 0.98693 0.93913 0.96274 1.68873 1.12216 1.30961 1.08515 1.19551 0.94520 0.91530 0.86654 1.01245 1.21523 0.97184 0.97410 1.00932 1.21344 0.98604 1.41066 0.95165 0.93021 1.25760 1.02180 0.95891 0.95018 1.70032 1.38393 1.47353 1.00180 0.85497 0.79807 0.78045 0.77935 1.20090 1.20593 1.19354 0.93553 0.91344 0.91549 0.93691 0.91169 0.87924 0.89334 0.91057 0.93730 0.95621 0.95177 0.92650 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.91 71.98 0.71 -2.59 16 2 C -0.10 -3.10 5.97 30.59 0.18 -2.92 16 3 C 0.02 0.71 2.46 42.19 0.10 0.82 16 4 H 0.05 1.98 7.64 -2.39 -0.02 1.96 16 5 C -0.12 -3.59 8.00 30.94 0.25 -3.34 16 6 C 0.01 0.25 7.00 83.58 0.58 0.84 16 7 N -0.48 -21.68 5.91 -881.20 -5.21 -26.89 16 8 C 0.19 9.92 1.66 44.17 0.07 9.99 16 9 H -0.03 -1.77 7.56 -2.38 -0.02 -1.78 16 10 C -0.11 -5.83 9.07 71.98 0.65 -5.18 16 11 C -0.52 -30.19 8.21 25.60 0.21 -29.98 16 12 H 0.05 2.99 7.69 -2.91 -0.02 2.97 16 13 C 0.01 0.58 5.30 84.66 0.45 1.03 16 14 N -0.92 -54.48 11.38 21.45 0.24 -54.24 16 15 Si 0.96 44.90 29.54 68.60 2.03 46.93 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 17 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 20 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 21 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 22 H 0.04 1.55 6.67 -2.39 -0.02 1.53 16 23 H 0.07 2.02 7.90 -2.38 -0.02 2.00 16 24 H 0.10 2.72 7.95 -2.39 -0.02 2.70 16 25 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 27 H 0.04 1.90 7.82 -2.39 -0.02 1.88 16 28 H 0.02 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.03 1.38 6.16 -2.38 -0.01 1.36 16 30 H 0.05 3.12 6.24 -2.39 -0.01 3.10 16 31 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -62.61 248.53 1.35 -61.26 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 1.07 Total: 4.28 kcal Atomic # 6 Polarization: -34.55 SS G_CDS: 3.22 Total: -31.34 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -4.96 Total: -81.13 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -62.61 1.35 -61.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306948483.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.525 kcal (2) G-P(sol) polarization free energy of solvation -62.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds