Wall clock time and date at job start Mon Mar 30 2020 02:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47141 * 2 1 4 4 H 1.09001 * 112.74261 * 65.76609 * 3 2 1 5 5 C 1.53507 * 113.53196 * 196.59249 * 3 2 1 6 6 C 1.53512 * 83.57783 * 140.79901 * 5 3 2 7 7 N 1.47479 * 87.92974 * 333.97478 * 6 5 3 8 8 C 1.46896 * 111.00029 * 138.70325 * 7 6 5 9 9 H 1.09001 * 109.47338 * 205.71590 * 8 7 6 10 10 C 1.52997 * 109.47361 * 325.72061 * 8 7 6 11 11 C 1.50705 * 109.47113 * 85.72010 * 8 7 6 12 12 H 1.08002 * 119.99806 * 359.97438 * 11 8 7 13 13 C 1.37878 * 120.00011 * 179.72600 * 11 8 7 14 14 N 1.31513 * 119.99980 * 180.27604 * 13 11 8 15 15 Si 1.86803 * 120.00045 * 0.27266 * 13 11 8 16 16 H 1.48505 * 109.46681 * 90.00302 * 15 13 11 17 17 H 1.48493 * 109.47235 * 209.99902 * 15 13 11 18 18 H 1.48498 * 109.47173 * 330.00471 * 15 13 11 19 19 H 1.09002 * 109.46828 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47351 * 300.00238 * 1 2 3 21 21 H 1.09005 * 109.47103 * 60.00590 * 1 2 3 22 22 H 1.08999 * 109.47351 * 239.99761 * 2 1 3 23 23 H 1.09006 * 109.46753 * 119.99823 * 2 1 3 24 24 H 1.08999 * 114.16797 * 254.44623 * 5 3 2 25 25 H 1.08998 * 114.16820 * 26.95694 * 5 3 2 26 26 H 1.08995 * 113.47646 * 219.21046 * 6 5 3 27 27 H 1.08996 * 113.47542 * 88.73958 * 6 5 3 28 28 H 1.09005 * 109.46893 * 310.31723 * 10 8 7 29 29 H 1.09005 * 109.47154 * 70.31372 * 10 8 7 30 30 H 1.09003 * 109.47487 * 190.31740 * 10 8 7 31 31 H 0.96997 * 120.00373 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7915 1.9773 0.9167 5 6 3.5160 1.5707 -0.4019 6 6 3.0261 2.8208 -1.1462 7 7 1.6969 2.1870 -1.2260 8 6 0.6312 3.1644 -0.9675 9 1 -0.2495 2.6489 -0.5844 10 6 1.1145 4.1847 0.0651 11 6 0.2795 3.8749 -2.2491 12 1 0.7963 3.6255 -3.1641 13 6 -0.7056 4.8396 -2.2547 14 7 -1.0163 5.4557 -3.3742 15 14 -1.5990 5.2713 -0.6719 16 1 -0.8758 6.3675 0.0214 17 1 -2.9811 5.7127 -0.9882 18 1 -1.6500 4.0771 0.2092 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 4.1883 1.7813 0.4298 25 1 3.8726 0.7717 -1.0518 26 1 3.4994 2.9609 -2.1180 27 1 3.0408 3.7234 -0.5354 28 1 1.5394 3.6613 0.9217 29 1 1.8747 4.8239 -0.3839 30 1 0.2736 4.7957 0.3933 31 1 -1.7090 6.1347 -3.3781 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306948485.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:36 Heat of formation + Delta-G solvation = 18.371416 kcal Electronic energy + Delta-G solvation = -11810.617075 eV Core-core repulsion = 9899.601943 eV Total energy + Delta-G solvation = -1911.015132 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.40056 -35.63021 -33.81002 -32.81576 -28.27857 -27.19962 -26.54895 -22.96288 -22.15974 -19.88241 -18.68365 -17.61277 -16.36546 -15.99543 -15.38279 -15.16480 -14.60003 -14.09106 -13.86366 -13.59692 -13.36592 -13.08203 -12.77085 -12.25130 -12.11160 -11.92041 -11.68901 -11.51392 -11.33218 -11.16035 -10.83610 -10.73294 -9.35777 -8.30606 -6.33201 1.25862 1.31715 1.41773 2.29069 3.03425 3.36853 3.68792 3.98413 4.23583 4.33925 4.40249 4.48865 4.51419 4.63652 4.68165 4.83973 4.86995 4.99022 5.01948 5.10139 5.13134 5.22487 5.37453 5.44003 5.50666 5.66867 5.89780 6.16491 6.68999 6.72587 7.31381 8.87158 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.046716 B = 0.014700 C = 0.013436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.219402 B = 1904.243275 C = 2083.410324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C 0.010 3.990 4 H 0.077 0.923 5 C -0.121 4.121 6 C -0.016 4.016 7 N -0.477 5.477 8 C 0.151 3.849 9 H 0.032 0.968 10 C -0.181 4.181 11 C -0.502 4.502 12 H 0.028 0.972 13 C 0.009 3.991 14 N -0.951 5.951 15 Si 0.951 3.049 16 H -0.264 1.264 17 H -0.297 1.297 18 H -0.250 1.250 19 H 0.066 0.934 20 H 0.047 0.953 21 H 0.031 0.969 22 H 0.061 0.939 23 H 0.087 0.913 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.037 0.963 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.316 -7.791 11.466 15.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.135 4.135 3 C -0.099 4.099 4 H 0.095 0.905 5 C -0.159 4.159 6 C -0.145 4.145 7 N -0.199 5.199 8 C 0.042 3.958 9 H 0.050 0.950 10 C -0.239 4.239 11 C -0.540 4.540 12 H 0.046 0.954 13 C -0.187 4.187 14 N -0.592 5.592 15 Si 0.778 3.222 16 H -0.190 1.190 17 H -0.225 1.225 18 H -0.174 1.174 19 H 0.085 0.915 20 H 0.066 0.934 21 H 0.050 0.950 22 H 0.079 0.921 23 H 0.106 0.894 24 H 0.113 0.887 25 H 0.112 0.888 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.959 -8.008 10.765 14.680 hybrid contribution -0.674 1.262 0.532 1.527 sum 5.285 -6.745 11.297 14.179 Atomic orbital electron populations 1.21710 0.96874 1.01454 1.00739 1.21370 0.95300 0.94430 1.02372 1.23620 0.95881 0.96614 0.93800 0.90509 1.23140 0.95169 0.97274 1.00281 1.23884 0.91753 0.98177 1.00660 1.69014 1.02308 1.17786 1.30823 1.19956 0.92557 0.90159 0.93132 0.95020 1.22760 1.00821 1.00722 0.99606 1.21144 1.19060 1.19094 0.94752 0.95365 1.25822 0.97501 0.95840 0.99575 1.70049 1.33072 1.27285 1.28816 0.85821 0.76918 0.79575 0.79888 1.19026 1.22467 1.17443 0.91484 0.93377 0.95004 0.92058 0.89425 0.88664 0.88849 0.92336 0.90206 0.91030 0.92347 0.94469 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.52 9.27 71.98 0.67 -3.85 16 2 C -0.10 -2.64 5.99 30.60 0.18 -2.46 16 3 C 0.01 0.31 2.89 42.19 0.12 0.44 16 4 H 0.08 2.32 5.90 -2.39 -0.01 2.31 16 5 C -0.12 -3.24 8.01 30.94 0.25 -2.99 16 6 C -0.02 -0.57 7.31 83.58 0.61 0.04 16 7 N -0.48 -19.89 5.83 -881.29 -5.14 -25.03 16 8 C 0.15 7.19 1.83 44.17 0.08 7.27 16 9 H 0.03 1.57 5.94 -2.39 -0.01 1.56 16 10 C -0.18 -7.48 7.04 71.98 0.51 -6.97 16 11 C -0.50 -29.81 9.28 25.60 0.24 -29.57 16 12 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 13 C 0.01 0.56 5.45 84.66 0.46 1.02 16 14 N -0.95 -61.11 13.96 21.45 0.30 -60.81 16 15 Si 0.95 45.74 24.29 68.60 1.67 47.40 16 16 H -0.26 -11.97 6.98 99.48 0.69 -11.28 16 17 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 18 H -0.25 -11.18 6.50 99.48 0.65 -10.53 16 19 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 20 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.03 1.18 7.12 -2.38 -0.02 1.16 16 22 H 0.06 1.71 8.08 -2.39 -0.02 1.69 16 23 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 24 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.09 2.36 8.08 -2.39 -0.02 2.34 16 26 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.08 2.81 4.86 -2.39 -0.01 2.80 16 28 H 0.07 2.42 5.79 -2.38 -0.01 2.40 16 29 H 0.06 2.45 6.49 -2.38 -0.02 2.43 16 30 H 0.04 1.57 3.65 -2.39 -0.01 1.56 16 31 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -67.55 234.73 0.97 -66.58 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 1.02 Total: 8.94 kcal Atomic # 6 Polarization: -40.20 SS G_CDS: 3.12 Total: -37.08 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -4.84 Total: -85.85 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.67 Total: 47.40 kcal Total: -67.55 0.97 -66.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306948485.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.952 kcal (2) G-P(sol) polarization free energy of solvation -67.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds