Wall clock time and date at job start Mon Mar 30 2020 02:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47071 * 2 1 4 4 H 1.09005 * 110.77890 * 303.20944 * 3 2 1 5 5 C 1.55158 * 110.72439 * 66.45076 * 3 2 1 6 6 C 1.54909 * 101.61642 * 153.88460 * 5 3 2 7 7 N 1.47427 * 104.83281 * 322.96922 * 6 5 3 8 8 C 1.36930 * 125.64624 * 204.16403 * 7 6 5 9 9 H 1.08002 * 119.99784 * 179.97438 * 8 7 6 10 10 C 1.38820 * 120.00266 * 359.97438 * 8 7 6 11 11 N 1.31614 * 119.99878 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99929 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47699 * 89.99771 * 12 10 8 14 14 H 1.48506 * 109.46953 * 209.99990 * 12 10 8 15 15 H 1.48506 * 109.47233 * 329.99514 * 12 10 8 16 16 C 1.47014 * 108.70101 * 24.13279 * 7 6 5 17 17 H 1.09001 * 109.88533 * 239.52022 * 16 7 6 18 18 C 1.53004 * 109.88282 * 118.51188 * 16 7 6 19 19 H 1.09001 * 109.47087 * 180.02562 * 1 2 3 20 20 H 1.08994 * 109.47405 * 300.00110 * 1 2 3 21 21 H 1.09004 * 109.47058 * 60.00389 * 1 2 3 22 22 H 1.08998 * 109.47190 * 239.99175 * 2 1 3 23 23 H 1.09004 * 109.47058 * 119.99610 * 2 1 3 24 24 H 1.09002 * 111.00366 * 35.78979 * 5 3 2 25 25 H 1.09002 * 111.00429 * 271.98041 * 5 3 2 26 26 H 1.09001 * 110.36668 * 81.81066 * 6 5 3 27 27 H 1.09000 * 110.36454 * 204.02068 * 6 5 3 28 28 H 0.96997 * 119.99856 * 179.97438 * 11 10 8 29 29 H 1.09000 * 109.47092 * 61.44940 * 18 16 7 30 30 H 1.09007 * 109.47223 * 181.45428 * 18 16 7 31 31 H 1.09005 * 109.46875 * 301.44951 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6426 1.9931 -0.8527 5 6 1.6763 2.1533 1.3303 6 6 2.7869 3.2294 1.4226 7 7 3.9953 2.5710 0.8937 8 6 5.2868 2.9200 1.1855 9 1 6.1068 2.3723 0.7450 10 6 5.5421 3.9776 2.0476 11 7 4.5428 4.6453 2.5841 12 14 7.3040 4.4541 2.4452 13 1 7.7771 5.4640 1.4646 14 1 7.3651 5.0267 3.8141 15 1 8.1706 3.2503 2.3731 16 6 3.5839 1.4773 0.0016 17 1 3.9755 0.5297 0.3716 18 6 4.1031 1.7372 -1.4140 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 1.7317 1.4615 2.1708 25 1 0.6901 2.6138 1.2704 26 1 2.5283 4.0947 0.8123 27 1 2.9393 3.5292 2.4594 28 1 4.7212 5.3841 3.1868 29 1 5.1925 1.7715 -1.4009 30 1 3.7727 0.9359 -2.0751 31 1 3.7139 2.6894 -1.7746 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307183969.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:26 Heat of formation + Delta-G solvation = 4.767437 kcal Electronic energy + Delta-G solvation = -11652.757600 eV Core-core repulsion = 9741.152555 eV Total energy + Delta-G solvation = -1911.605045 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.03136 -33.77093 -31.58682 -30.12294 -28.35960 -25.09827 -23.87174 -21.77503 -19.79206 -19.02094 -16.53941 -15.07951 -14.38045 -13.94864 -13.77175 -13.24568 -12.57129 -12.14865 -11.94169 -11.66145 -11.45408 -11.08277 -10.94058 -10.80126 -10.61759 -10.48990 -10.01978 -9.79195 -9.57832 -9.50237 -9.32495 -8.56682 -6.74485 -5.56877 -2.97741 3.43873 3.48600 3.50647 4.55082 5.24089 5.33515 5.42731 5.55311 5.67223 5.83391 5.96584 6.02871 6.15827 6.28372 6.32233 6.36637 6.40982 6.49853 6.56286 6.67939 6.82734 6.87811 7.04088 7.29409 7.63229 7.72818 7.95755 8.45909 9.31341 9.93091 10.59634 11.46839 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.068344 B = 0.011724 C = 0.010582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.595857 B = 2387.616690 C = 2645.287795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C -0.096 4.096 4 H 0.068 0.932 5 C -0.139 4.139 6 C 0.152 3.848 7 N -0.599 5.599 8 C -0.215 4.215 9 H 0.076 0.924 10 C -0.015 4.015 11 N -0.923 5.923 12 Si 0.912 3.088 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 C 0.159 3.841 17 H 0.031 0.969 18 C -0.154 4.154 19 H 0.046 0.954 20 H 0.055 0.945 21 H 0.049 0.951 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.008 0.992 27 H 0.104 0.896 28 H 0.250 0.750 29 H 0.048 0.952 30 H 0.036 0.964 31 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.641 -6.466 -4.226 9.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C -0.115 4.115 4 H 0.086 0.914 5 C -0.178 4.178 6 C 0.027 3.973 7 N -0.324 5.324 8 C -0.344 4.344 9 H 0.093 0.907 10 C -0.210 4.210 11 N -0.573 5.573 12 Si 0.743 3.257 13 H -0.218 1.218 14 H -0.217 1.217 15 H -0.208 1.208 16 C 0.052 3.948 17 H 0.049 0.951 18 C -0.213 4.213 19 H 0.065 0.935 20 H 0.074 0.926 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.026 0.974 27 H 0.122 0.878 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.511 -6.307 -4.082 9.317 hybrid contribution 0.942 0.367 0.068 1.013 sum -4.569 -5.940 -4.014 8.501 Atomic orbital electron populations 1.21753 0.96428 1.00652 1.01730 1.21490 0.95214 0.96840 1.01369 1.22244 0.95887 0.94903 0.98476 0.91407 1.23049 0.99165 0.99590 0.95980 1.21903 0.82865 0.90569 1.01983 1.44584 1.02357 1.34440 1.50991 1.19062 0.82322 1.11394 1.21593 0.90650 1.24774 0.97497 0.98456 1.00262 1.69817 1.28287 1.23651 1.35504 0.86103 0.83999 0.78201 0.77409 1.21770 1.21734 1.20781 1.20962 0.91615 0.92153 0.90075 0.95118 1.22235 1.01145 0.99839 0.98128 0.93509 0.92606 0.93159 0.92670 0.92169 0.92401 0.92802 0.97407 0.87838 0.93899 0.93242 0.94523 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.76 37.16 0.36 -1.53 16 2 C -0.11 -1.67 5.30 -26.74 -0.14 -1.81 16 3 C -0.10 -1.76 2.51 -88.73 -0.22 -1.99 16 4 H 0.07 1.22 7.86 -51.93 -0.41 0.81 16 5 C -0.14 -2.77 5.68 -24.58 -0.14 -2.91 16 6 C 0.15 3.84 5.89 -2.53 -0.01 3.82 16 7 N -0.60 -15.81 3.13 -162.51 -0.51 -16.31 16 8 C -0.22 -6.14 9.87 -15.06 -0.15 -6.29 16 9 H 0.08 2.09 7.83 -52.49 -0.41 1.67 16 10 C -0.01 -0.43 5.49 -17.43 -0.10 -0.53 16 11 N -0.92 -27.60 10.09 55.49 0.56 -27.04 16 12 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 C 0.16 3.44 3.32 -66.90 -0.22 3.22 16 17 H 0.03 0.68 7.82 -51.93 -0.41 0.27 16 18 C -0.15 -3.04 9.15 37.16 0.34 -2.70 16 19 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 20 H 0.05 0.72 7.49 -51.93 -0.39 0.33 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 24 H 0.06 1.14 8.02 -51.93 -0.42 0.73 16 25 H 0.05 0.96 8.13 -51.93 -0.42 0.54 16 26 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.10 2.93 5.88 -51.93 -0.31 2.62 16 28 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.05 1.01 8.02 -51.93 -0.42 0.59 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 247.37 15.07 3.73 3.73 Total: -1.00 -29.86 247.37 -6.79 -36.65 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -5.27 Total: -3.88 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -0.28 Total: -10.71 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.05 Total: -43.36 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.86 -6.79 -36.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307183969.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.420 kcal (2) G-P(sol) polarization free energy of solvation -29.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds