Wall clock time and date at job start Mon Mar 30 2020 02:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47071 * 2 1 4 4 H 1.09005 * 110.77890 * 303.20944 * 3 2 1 5 5 C 1.55158 * 110.72439 * 66.45076 * 3 2 1 6 6 C 1.54909 * 101.61642 * 153.88460 * 5 3 2 7 7 N 1.47427 * 104.83281 * 322.96922 * 6 5 3 8 8 C 1.36930 * 125.64624 * 204.16403 * 7 6 5 9 9 H 1.08002 * 119.99784 * 179.97438 * 8 7 6 10 10 C 1.38820 * 120.00266 * 359.97438 * 8 7 6 11 11 N 1.31614 * 119.99878 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 119.99929 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47699 * 89.99771 * 12 10 8 14 14 H 1.48506 * 109.46953 * 209.99990 * 12 10 8 15 15 H 1.48506 * 109.47233 * 329.99514 * 12 10 8 16 16 C 1.47014 * 108.70101 * 24.13279 * 7 6 5 17 17 H 1.09001 * 109.88533 * 239.52022 * 16 7 6 18 18 C 1.53004 * 109.88282 * 118.51188 * 16 7 6 19 19 H 1.09001 * 109.47087 * 180.02562 * 1 2 3 20 20 H 1.08994 * 109.47405 * 300.00110 * 1 2 3 21 21 H 1.09004 * 109.47058 * 60.00389 * 1 2 3 22 22 H 1.08998 * 109.47190 * 239.99175 * 2 1 3 23 23 H 1.09004 * 109.47058 * 119.99610 * 2 1 3 24 24 H 1.09002 * 111.00366 * 35.78979 * 5 3 2 25 25 H 1.09002 * 111.00429 * 271.98041 * 5 3 2 26 26 H 1.09001 * 110.36668 * 81.81066 * 6 5 3 27 27 H 1.09000 * 110.36454 * 204.02068 * 6 5 3 28 28 H 0.96997 * 119.99856 * 179.97438 * 11 10 8 29 29 H 1.09000 * 109.47092 * 61.44940 * 18 16 7 30 30 H 1.09007 * 109.47223 * 181.45428 * 18 16 7 31 31 H 1.09005 * 109.46875 * 301.44951 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6426 1.9931 -0.8527 5 6 1.6763 2.1533 1.3303 6 6 2.7869 3.2294 1.4226 7 7 3.9953 2.5710 0.8937 8 6 5.2868 2.9200 1.1855 9 1 6.1068 2.3723 0.7450 10 6 5.5421 3.9776 2.0476 11 7 4.5428 4.6453 2.5841 12 14 7.3040 4.4541 2.4452 13 1 7.7771 5.4640 1.4646 14 1 7.3651 5.0267 3.8141 15 1 8.1706 3.2503 2.3731 16 6 3.5839 1.4773 0.0016 17 1 3.9755 0.5297 0.3716 18 6 4.1031 1.7372 -1.4140 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 1.7317 1.4615 2.1708 25 1 0.6901 2.6138 1.2704 26 1 2.5283 4.0947 0.8123 27 1 2.9393 3.5292 2.4594 28 1 4.7212 5.3841 3.1868 29 1 5.1925 1.7715 -1.4009 30 1 3.7727 0.9359 -2.0751 31 1 3.7139 2.6894 -1.7746 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307183969.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:26 Heat of formation + Delta-G solvation = -12.648205 kcal Electronic energy + Delta-G solvation = -11653.512799 eV Core-core repulsion = 9741.152555 eV Total energy + Delta-G solvation = -1912.360244 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.73125 -35.48950 -33.36267 -31.85566 -30.16487 -26.67778 -25.82305 -23.23231 -21.57874 -20.64567 -18.59492 -16.99625 -16.08906 -15.72774 -15.17436 -14.78963 -14.12220 -13.98388 -13.43516 -13.29862 -12.97808 -12.84576 -12.71521 -12.53492 -12.31883 -12.01208 -11.76664 -11.52869 -11.33536 -11.07053 -11.05710 -10.71206 -8.84869 -7.74170 -5.17680 1.45019 1.47170 1.55799 2.50652 3.34307 3.71460 3.86618 4.02924 4.21046 4.50737 4.56396 4.62550 4.68263 4.79897 4.84586 4.91671 5.06316 5.08043 5.19280 5.24730 5.38014 5.43494 5.51391 5.53151 5.68428 5.73076 5.86887 6.34608 7.14528 7.84136 8.49136 9.27779 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.068344 B = 0.011724 C = 0.010582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.595857 B = 2387.616690 C = 2645.287795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 C -0.084 4.084 4 H 0.075 0.925 5 C -0.125 4.125 6 C 0.152 3.848 7 N -0.621 5.621 8 C -0.228 4.228 9 H 0.078 0.922 10 C -0.074 4.074 11 N -0.952 5.952 12 Si 0.978 3.022 13 H -0.288 1.288 14 H -0.293 1.293 15 H -0.270 1.270 16 C 0.146 3.854 17 H 0.029 0.971 18 C -0.145 4.145 19 H 0.066 0.934 20 H 0.051 0.949 21 H 0.058 0.942 22 H 0.071 0.929 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.078 0.922 26 H -0.019 1.019 27 H 0.068 0.932 28 H 0.245 0.755 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.129 -7.938 -5.207 11.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.103 4.103 4 H 0.093 0.907 5 C -0.163 4.163 6 C 0.027 3.973 7 N -0.346 5.346 8 C -0.358 4.358 9 H 0.096 0.904 10 C -0.265 4.265 11 N -0.602 5.602 12 Si 0.807 3.193 13 H -0.215 1.215 14 H -0.220 1.220 15 H -0.194 1.194 16 C 0.040 3.960 17 H 0.047 0.953 18 C -0.204 4.204 19 H 0.085 0.915 20 H 0.070 0.930 21 H 0.077 0.923 22 H 0.090 0.910 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.096 0.904 26 H -0.002 1.002 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.007 -7.811 -5.088 11.090 hybrid contribution 1.088 0.803 0.350 1.397 sum -4.919 -7.008 -4.738 9.785 Atomic orbital electron populations 1.21727 0.94426 1.02127 1.01959 1.21450 0.96877 0.94052 1.01939 1.22216 0.93340 0.97308 0.97474 0.90687 1.22894 0.98214 0.97990 0.97230 1.21705 0.84765 0.91660 0.99217 1.44909 1.01965 1.35517 1.52208 1.19412 0.83692 1.11371 1.21303 0.90416 1.25631 1.01474 0.98826 1.00615 1.70079 1.30107 1.23940 1.36081 0.85072 0.79517 0.78029 0.76710 1.21537 1.21966 1.19439 1.21281 0.94165 0.90401 0.90122 0.95322 1.22113 1.00079 1.00658 0.97558 0.91486 0.93030 0.92323 0.91027 0.92745 0.92290 0.90389 1.00150 0.91355 0.94537 0.94711 0.90659 0.94530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.76 71.98 0.70 -2.43 16 2 C -0.11 -2.80 5.30 30.59 0.16 -2.63 16 3 C -0.08 -2.91 2.51 -9.57 -0.02 -2.93 16 4 H 0.07 2.49 7.86 -2.38 -0.02 2.47 16 5 C -0.12 -4.84 5.68 31.99 0.18 -4.65 16 6 C 0.15 7.85 5.89 86.85 0.51 8.36 16 7 N -0.62 -33.14 3.13 -668.05 -2.09 -35.23 16 8 C -0.23 -13.22 9.87 84.04 0.83 -12.39 16 9 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 10 C -0.07 -4.31 5.49 84.86 0.47 -3.85 16 11 N -0.95 -58.64 10.09 21.65 0.22 -58.43 16 12 Si 0.98 47.05 29.55 68.60 2.03 49.08 16 13 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 14 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 15 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 16 C 0.15 6.15 3.32 45.38 0.15 6.31 16 17 H 0.03 1.23 7.82 -2.39 -0.02 1.21 16 18 C -0.14 -5.48 9.15 71.98 0.66 -4.82 16 19 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 20 H 0.05 1.16 7.49 -2.39 -0.02 1.14 16 21 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.05 1.52 8.10 -2.39 -0.02 1.50 16 24 H 0.06 2.26 8.02 -2.39 -0.02 2.25 16 25 H 0.08 2.63 8.13 -2.39 -0.02 2.61 16 26 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 27 H 0.07 4.02 5.88 -2.39 -0.01 4.01 16 28 H 0.24 14.64 8.31 -92.71 -0.77 13.87 16 29 H 0.03 1.38 8.02 -2.39 -0.02 1.36 16 30 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 31 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -65.12 247.37 4.86 -60.26 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: 1.06 Total: 3.36 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: 3.64 Total: -19.03 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -1.87 Total: -93.66 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -65.12 4.86 -60.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307183969.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.608 kcal (2) G-P(sol) polarization free energy of solvation -65.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds