Wall clock time and date at job start Mon Mar 30 2020 02:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46909 * 2 1 4 4 H 1.09002 * 110.64028 * 56.68984 * 3 2 1 5 5 C 1.55162 * 110.71914 * 293.54862 * 3 2 1 6 6 C 1.54914 * 101.57736 * 205.95539 * 5 3 2 7 7 N 1.47423 * 104.83347 * 37.00999 * 6 5 3 8 8 C 1.36938 * 125.64751 * 155.83301 * 7 6 5 9 9 H 1.07999 * 119.99769 * 200.02588 * 8 7 6 10 10 C 1.38806 * 119.99813 * 20.03433 * 8 7 6 11 11 N 1.31613 * 120.00450 * 28.07425 * 10 8 7 12 12 Si 1.86802 * 119.99816 * 208.07524 * 10 8 7 13 13 H 1.48501 * 109.47469 * 179.97438 * 12 10 8 14 14 H 1.48502 * 109.46928 * 299.99937 * 12 10 8 15 15 H 1.48503 * 109.47221 * 59.99781 * 12 10 8 16 16 C 1.47021 * 108.70245 * 336.09791 * 7 6 5 17 17 H 1.09001 * 109.88737 * 120.25234 * 16 7 6 18 18 C 1.53010 * 109.88085 * 241.41443 * 16 7 6 19 19 H 1.09002 * 109.46688 * 180.02562 * 1 2 3 20 20 H 1.08995 * 109.47600 * 299.99768 * 1 2 3 21 21 H 1.08995 * 109.47076 * 60.00198 * 1 2 3 22 22 H 1.08995 * 109.47600 * 240.00232 * 2 1 3 23 23 H 1.08994 * 109.47593 * 119.99838 * 2 1 3 24 24 H 1.08997 * 111.00551 * 87.88400 * 5 3 2 25 25 H 1.08992 * 111.00345 * 324.02949 * 5 3 2 26 26 H 1.09001 * 110.36437 * 278.17115 * 6 5 3 27 27 H 1.09003 * 110.36260 * 155.84948 * 6 5 3 28 28 H 0.97004 * 119.99897 * 5.65060 * 11 10 8 29 29 H 1.09000 * 109.46849 * 58.54679 * 18 16 7 30 30 H 1.08998 * 109.47081 * 178.54543 * 18 16 7 31 31 H 1.08995 * 109.47113 * 298.54801 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6398 1.9915 0.8525 5 6 1.6762 2.1534 -1.3304 6 6 2.7847 3.2319 -1.4198 7 7 3.9934 2.5757 -0.8890 8 6 5.2848 2.9277 -1.1781 9 1 6.0857 2.2211 -1.0181 10 6 5.5644 4.1926 -1.6766 11 7 4.7808 5.2064 -1.3761 12 14 7.0528 4.4560 -2.7741 13 1 7.1285 5.8849 -3.1712 14 1 8.2852 4.0811 -2.0352 15 1 6.9278 3.6111 -3.9890 16 6 3.5827 1.4769 -0.0027 17 1 3.9757 0.5318 -0.3773 18 6 4.0972 1.7322 1.4155 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8899 24 1 0.6891 2.6117 -1.2713 25 1 1.7348 1.4623 -2.1712 26 1 2.5231 4.0962 -0.8093 27 1 2.9397 3.5314 -2.4563 28 1 4.0565 5.0882 -0.7417 29 1 3.7044 2.6817 1.7790 30 1 3.7673 0.9271 2.0721 31 1 5.1865 1.7696 1.4055 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307183970.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:28 Heat of formation + Delta-G solvation = -19.984860 kcal Electronic energy + Delta-G solvation = -11682.076091 eV Core-core repulsion = 9769.397706 eV Total energy + Delta-G solvation = -1912.678385 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.94619 -35.72268 -33.40188 -32.07474 -30.04266 -26.78712 -25.68387 -23.41251 -21.63997 -20.83923 -19.21686 -16.69257 -16.28988 -15.64631 -15.25474 -15.06927 -14.58559 -14.28530 -13.48088 -13.40598 -12.99752 -12.85594 -12.53887 -12.48887 -12.16285 -11.97173 -11.87307 -11.55438 -11.45774 -11.35439 -11.15037 -10.48614 -8.97330 -8.31320 -5.33061 1.54920 1.63585 1.82416 2.64127 3.19551 3.52162 3.75359 3.87925 4.05627 4.39907 4.43677 4.49666 4.54449 4.63698 4.73683 4.81153 4.93036 4.97439 5.05973 5.08667 5.18363 5.28479 5.34636 5.40690 5.47759 5.61950 5.73253 6.33678 6.95609 7.73719 8.35553 9.00086 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.067201 B = 0.011600 C = 0.010953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.558682 B = 2413.241886 C = 2555.832527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 C -0.084 4.084 4 H 0.075 0.925 5 C -0.115 4.115 6 C 0.143 3.857 7 N -0.620 5.620 8 C -0.338 4.338 9 H 0.054 0.946 10 C -0.082 4.082 11 N -0.945 5.945 12 Si 1.115 2.885 13 H -0.291 1.291 14 H -0.274 1.274 15 H -0.281 1.281 16 C 0.146 3.854 17 H 0.032 0.968 18 C -0.142 4.142 19 H 0.067 0.933 20 H 0.057 0.943 21 H 0.053 0.947 22 H 0.057 0.943 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.069 0.931 26 H 0.000 1.000 27 H 0.013 0.987 28 H 0.253 0.747 29 H 0.030 0.970 30 H 0.076 0.924 31 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.174 -9.507 2.344 12.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.103 4.103 4 H 0.093 0.907 5 C -0.153 4.153 6 C 0.018 3.982 7 N -0.346 5.346 8 C -0.467 4.467 9 H 0.072 0.928 10 C -0.278 4.278 11 N -0.588 5.588 12 Si 0.939 3.061 13 H -0.217 1.217 14 H -0.200 1.200 15 H -0.208 1.208 16 C 0.040 3.960 17 H 0.049 0.951 18 C -0.201 4.201 19 H 0.086 0.914 20 H 0.076 0.924 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.088 0.912 24 H 0.105 0.895 25 H 0.088 0.912 26 H 0.018 0.982 27 H 0.032 0.968 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.095 0.905 31 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -6.260 -8.389 1.415 10.563 hybrid contribution -0.480 -0.625 1.033 1.300 sum -6.741 -9.014 2.448 11.519 Atomic orbital electron populations 1.21730 0.94220 1.02268 1.02044 1.21449 0.96999 0.93728 1.02102 1.22205 0.93092 0.97666 0.97360 0.90706 1.22776 0.97504 0.97184 0.97829 1.21451 0.87366 0.94265 0.95128 1.44940 1.01426 1.36580 1.51671 1.19910 0.84555 0.98442 1.43809 0.92845 1.27164 1.06624 0.90537 1.03494 1.70888 1.21178 1.31208 1.35494 0.82859 0.72465 0.75449 0.75296 1.21656 1.20020 1.20781 1.21293 0.94197 0.90726 0.89755 0.95065 1.22068 0.99812 1.00333 0.97897 0.91397 0.92423 0.92740 0.92411 0.91158 0.89495 0.91244 0.98198 0.96832 0.93661 0.95061 0.90542 0.95334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.76 71.98 0.70 -2.25 16 2 C -0.10 -2.67 5.30 30.60 0.16 -2.51 16 3 C -0.08 -2.82 2.50 -9.61 -0.02 -2.85 16 4 H 0.07 2.46 7.86 -2.39 -0.02 2.44 16 5 C -0.11 -4.15 5.68 31.99 0.18 -3.97 16 6 C 0.14 7.11 5.39 86.86 0.47 7.57 16 7 N -0.62 -33.02 2.99 -668.26 -2.00 -35.02 16 8 C -0.34 -20.02 9.60 84.03 0.81 -19.21 16 9 H 0.05 3.16 7.97 -2.91 -0.02 3.14 16 10 C -0.08 -4.93 5.11 84.86 0.43 -4.50 16 11 N -0.94 -60.41 13.01 21.65 0.28 -60.13 16 12 Si 1.12 53.15 30.00 68.60 2.06 55.21 16 13 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 15 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 16 C 0.15 6.20 3.32 45.34 0.15 6.35 16 17 H 0.03 1.35 7.83 -2.39 -0.02 1.33 16 18 C -0.14 -5.70 9.14 71.99 0.66 -5.04 16 19 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 20 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 21 H 0.05 1.12 7.48 -2.39 -0.02 1.10 16 22 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 23 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.09 2.67 8.12 -2.39 -0.02 2.65 16 25 H 0.07 2.42 8.02 -2.39 -0.02 2.40 16 26 H 0.00 0.01 6.80 -2.39 -0.02 0.00 16 27 H 0.01 0.73 8.09 -2.39 -0.02 0.71 16 28 H 0.25 16.50 6.18 -92.71 -0.57 15.93 16 29 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.03 1.23 8.03 -2.39 -0.02 1.21 16 Total: -1.00 -68.23 248.31 5.14 -63.09 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: 1.26 Total: 3.25 kcal Atomic # 6 Polarization: -29.95 SS G_CDS: 3.54 Total: -26.41 kcal Atomic # 7 Polarization: -93.43 SS G_CDS: -1.72 Total: -95.14 kcal Atomic # 14 Polarization: 53.15 SS G_CDS: 2.06 Total: 55.21 kcal Total: -68.23 5.14 -63.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307183970.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.106 kcal (2) G-P(sol) polarization free energy of solvation -68.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds