Wall clock time and date at job start Mon Mar 30 2020 02:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47138 * 2 1 4 4 H 1.08992 * 109.47038 * 55.00320 * 3 2 1 5 5 C 1.52996 * 109.46909 * 175.00382 * 3 2 1 6 6 N 1.46500 * 109.47105 * 295.00149 * 3 2 1 7 7 C 1.36932 * 119.99877 * 122.77227 * 6 3 2 8 8 H 1.08001 * 119.99955 * 213.74290 * 7 6 3 9 9 C 1.38812 * 120.00255 * 33.74516 * 7 6 3 10 10 N 1.31622 * 119.99931 * 15.04050 * 9 7 6 11 11 Si 1.86799 * 120.00298 * 195.04763 * 9 7 6 12 12 H 1.48501 * 109.46893 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47445 * 119.99865 * 11 9 7 14 14 H 1.48505 * 109.47217 * 239.99953 * 11 9 7 15 15 C 1.46496 * 120.00189 * 302.76884 * 6 3 2 16 16 C 1.52999 * 117.50220 * 193.25174 * 15 6 3 17 17 C 1.53003 * 117.50111 * 124.58803 * 15 6 3 18 18 H 1.09003 * 109.47052 * 299.99887 * 1 2 3 19 19 H 1.09002 * 109.47476 * 59.99848 * 1 2 3 20 20 H 1.08998 * 109.47493 * 179.97438 * 1 2 3 21 21 H 1.09010 * 109.46412 * 240.00134 * 2 1 3 22 22 H 1.08993 * 109.47126 * 120.00664 * 2 1 3 23 23 H 1.09002 * 109.47391 * 299.99777 * 5 3 2 24 24 H 1.08998 * 109.47264 * 179.97438 * 5 3 2 25 25 H 1.09000 * 109.47551 * 60.00235 * 5 3 2 26 26 H 0.97003 * 120.00253 * 184.97540 * 10 9 7 27 27 H 1.09001 * 115.55198 * 338.92097 * 15 6 3 28 28 H 1.09001 * 117.49756 * 359.97438 * 16 15 6 29 29 H 1.08999 * 117.50175 * 145.02229 * 16 15 6 30 30 H 1.08993 * 117.50530 * 214.98222 * 17 15 6 31 31 H 1.09000 * 117.49668 * 0.02562 * 17 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 0.8418 5 6 3.5648 1.4442 0.1256 6 7 1.6524 2.0975 -1.2518 7 6 0.9062 3.2452 -1.2214 8 1 0.1834 3.4402 -1.9999 9 6 1.0788 4.1583 -0.1902 10 7 2.1401 4.0829 0.5847 11 14 -0.1951 5.4937 0.0980 12 1 -1.2847 5.3626 -0.9025 13 1 -0.7581 5.3542 1.4649 14 1 0.4451 6.8266 -0.0400 15 6 2.0631 1.5246 -2.5360 16 6 1.9046 2.3979 -3.7822 17 6 0.9643 1.2117 -3.5538 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8932 -0.5139 -0.8901 22 1 1.8933 -0.5139 0.8899 23 1 3.8532 0.9569 1.0570 24 1 3.9282 2.4719 0.1252 25 1 3.9994 0.9053 -0.7162 26 1 2.2256 4.6742 1.3490 27 1 2.9203 0.8523 -2.4983 28 1 1.4943 3.3986 -3.6467 29 1 2.6573 2.2999 -4.5645 30 1 1.0988 0.3340 -4.1858 31 1 -0.0641 1.4325 -3.2680 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307622611.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:15 Heat of formation + Delta-G solvation = 33.350183 kcal Electronic energy + Delta-G solvation = -11910.214623 eV Core-core repulsion = 9999.849019 eV Total energy + Delta-G solvation = -1910.365604 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -37.46033 -34.48688 -32.28379 -29.65000 -28.29345 -24.11916 -22.55243 -21.32785 -20.75696 -18.88130 -16.23945 -15.29738 -14.55209 -13.89617 -13.36733 -12.99306 -12.41455 -12.24003 -11.87615 -11.32076 -10.89889 -10.85964 -10.75527 -10.59329 -10.55138 -10.20901 -9.96932 -9.72231 -9.44535 -9.29369 -9.08379 -8.34216 -6.47049 -5.75075 -3.28282 3.36643 3.45537 3.47529 4.48615 5.01428 5.28682 5.44535 5.90048 5.97341 6.07519 6.13708 6.24170 6.33009 6.52667 6.59337 6.63260 6.67660 6.78499 6.88877 6.94700 7.03280 7.08964 7.21252 7.22334 7.69325 7.74676 7.89420 8.52815 9.26528 9.87848 10.42778 11.27148 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.031915 B = 0.018599 C = 0.015744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.121260 B = 1505.119303 C = 1778.027709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.137 4.137 3 C 0.190 3.810 4 H 0.092 0.908 5 C -0.147 4.147 6 N -0.547 5.547 7 C -0.251 4.251 8 H 0.063 0.937 9 C 0.010 3.990 10 N -0.892 5.892 11 Si 0.897 3.103 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.290 1.290 15 C 0.134 3.866 16 C -0.202 4.202 17 C -0.229 4.229 18 H 0.043 0.957 19 H 0.063 0.937 20 H 0.029 0.971 21 H 0.046 0.954 22 H 0.043 0.957 23 H 0.027 0.973 24 H 0.076 0.924 25 H 0.023 0.977 26 H 0.252 0.748 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.582 -5.324 -1.985 5.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.176 4.176 3 C 0.084 3.916 4 H 0.110 0.890 5 C -0.206 4.206 6 N -0.263 5.263 7 C -0.381 4.381 8 H 0.081 0.919 9 C -0.190 4.190 10 N -0.535 5.535 11 Si 0.726 3.274 12 H -0.203 1.203 13 H -0.216 1.216 14 H -0.217 1.217 15 C 0.024 3.976 16 C -0.241 4.241 17 C -0.270 4.270 18 H 0.063 0.937 19 H 0.082 0.918 20 H 0.048 0.952 21 H 0.065 0.935 22 H 0.062 0.938 23 H 0.046 0.954 24 H 0.095 0.905 25 H 0.042 0.958 26 H 0.062 0.938 27 H 0.104 0.896 28 H 0.115 0.885 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.496 -5.155 -1.820 5.490 hybrid contribution -0.635 0.735 0.117 0.978 sum -1.132 -4.421 -1.704 4.871 Atomic orbital electron populations 1.21578 0.96511 0.98769 1.02368 1.22109 0.96067 0.99979 0.99471 1.20275 0.92401 0.88813 0.90089 0.88981 1.22139 0.98744 1.02436 0.97303 1.43498 1.59269 1.25461 0.98077 1.19066 1.13024 0.95337 1.10642 0.91900 1.25124 0.96324 0.96852 1.00676 1.70058 1.25425 1.40156 1.17824 0.86324 0.81335 0.81903 0.77798 1.20262 1.21578 1.21718 1.20928 0.94933 0.98080 0.83682 1.23089 1.02804 0.96774 1.01406 1.23375 0.97826 0.98475 1.07325 0.93737 0.91788 0.95218 0.93494 0.93824 0.95384 0.90477 0.95823 0.93788 0.89591 0.88521 0.91018 0.91150 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.80 37.16 0.36 -2.21 16 2 C -0.14 -2.69 5.33 -26.73 -0.14 -2.84 16 3 C 0.19 4.39 1.76 -67.93 -0.12 4.27 16 4 H 0.09 2.42 6.14 -51.93 -0.32 2.10 16 5 C -0.15 -3.24 9.05 37.16 0.34 -2.91 16 6 N -0.55 -13.28 2.16 -158.15 -0.34 -13.62 16 7 C -0.25 -6.68 8.26 -15.06 -0.12 -6.81 16 8 H 0.06 1.70 7.03 -52.49 -0.37 1.33 16 9 C 0.01 0.26 4.90 -17.43 -0.09 0.18 16 10 N -0.89 -24.91 10.24 55.49 0.57 -24.34 16 11 Si 0.90 21.50 29.58 -169.99 -5.03 16.47 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 C 0.13 2.89 5.30 -67.93 -0.36 2.53 16 16 C -0.20 -4.11 9.79 -26.69 -0.26 -4.37 16 17 C -0.23 -4.47 10.10 -26.69 -0.27 -4.74 16 18 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 19 H 0.06 1.33 7.75 -51.93 -0.40 0.93 16 20 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 21 H 0.05 0.89 7.39 -51.92 -0.38 0.51 16 22 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.08 1.93 7.09 -51.93 -0.37 1.56 16 25 H 0.02 0.47 7.04 -51.93 -0.37 0.11 16 26 H 0.25 6.86 8.32 -40.82 -0.34 6.52 16 27 H 0.09 1.76 7.04 -51.93 -0.37 1.40 16 28 H 0.10 2.16 6.83 -51.93 -0.35 1.81 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.08 1.74 8.09 -51.93 -0.42 1.32 16 LS Contribution 249.18 15.07 3.76 3.76 Total: -1.00 -27.07 249.18 -6.73 -33.80 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -5.02 Total: 0.82 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -0.66 Total: -16.89 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.23 Total: -37.96 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -27.07 -6.73 -33.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307622611.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.152 kcal (2) G-P(sol) polarization free energy of solvation -27.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds