Wall clock time and date at job start Mon Mar 30 2020 02:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47138 * 2 1 4 4 H 1.08992 * 109.47038 * 55.00320 * 3 2 1 5 5 C 1.52996 * 109.46909 * 175.00382 * 3 2 1 6 6 N 1.46500 * 109.47105 * 295.00149 * 3 2 1 7 7 C 1.36932 * 119.99877 * 122.77227 * 6 3 2 8 8 H 1.08001 * 119.99955 * 213.74290 * 7 6 3 9 9 C 1.38812 * 120.00255 * 33.74516 * 7 6 3 10 10 N 1.31622 * 119.99931 * 15.04050 * 9 7 6 11 11 Si 1.86799 * 120.00298 * 195.04763 * 9 7 6 12 12 H 1.48501 * 109.46893 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47445 * 119.99865 * 11 9 7 14 14 H 1.48505 * 109.47217 * 239.99953 * 11 9 7 15 15 C 1.46496 * 120.00189 * 302.76884 * 6 3 2 16 16 C 1.52999 * 117.50220 * 193.25174 * 15 6 3 17 17 C 1.53003 * 117.50111 * 124.58803 * 15 6 3 18 18 H 1.09003 * 109.47052 * 299.99887 * 1 2 3 19 19 H 1.09002 * 109.47476 * 59.99848 * 1 2 3 20 20 H 1.08998 * 109.47493 * 179.97438 * 1 2 3 21 21 H 1.09010 * 109.46412 * 240.00134 * 2 1 3 22 22 H 1.08993 * 109.47126 * 120.00664 * 2 1 3 23 23 H 1.09002 * 109.47391 * 299.99777 * 5 3 2 24 24 H 1.08998 * 109.47264 * 179.97438 * 5 3 2 25 25 H 1.09000 * 109.47551 * 60.00235 * 5 3 2 26 26 H 0.97003 * 120.00253 * 184.97540 * 10 9 7 27 27 H 1.09001 * 115.55198 * 338.92097 * 15 6 3 28 28 H 1.09001 * 117.49756 * 359.97438 * 16 15 6 29 29 H 1.08999 * 117.50175 * 145.02229 * 16 15 6 30 30 H 1.08993 * 117.50530 * 214.98222 * 17 15 6 31 31 H 1.09000 * 117.49668 * 0.02562 * 17 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 0.8418 5 6 3.5648 1.4442 0.1256 6 7 1.6524 2.0975 -1.2518 7 6 0.9062 3.2452 -1.2214 8 1 0.1834 3.4402 -1.9999 9 6 1.0788 4.1583 -0.1902 10 7 2.1401 4.0829 0.5847 11 14 -0.1951 5.4937 0.0980 12 1 -1.2847 5.3626 -0.9025 13 1 -0.7581 5.3542 1.4649 14 1 0.4451 6.8266 -0.0400 15 6 2.0631 1.5246 -2.5360 16 6 1.9046 2.3979 -3.7822 17 6 0.9643 1.2117 -3.5538 18 1 -0.3633 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8932 -0.5139 -0.8901 22 1 1.8933 -0.5139 0.8899 23 1 3.8532 0.9569 1.0570 24 1 3.9282 2.4719 0.1252 25 1 3.9994 0.9053 -0.7162 26 1 2.2256 4.6742 1.3490 27 1 2.9203 0.8523 -2.4983 28 1 1.4943 3.3986 -3.6467 29 1 2.6573 2.2999 -4.5645 30 1 1.0988 0.3340 -4.1858 31 1 -0.0641 1.4325 -3.2680 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307622611.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:15 Heat of formation + Delta-G solvation = 19.485061 kcal Electronic energy + Delta-G solvation = -11910.815860 eV Core-core repulsion = 9999.849019 eV Total energy + Delta-G solvation = -1910.966841 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.21023 -36.16390 -34.20814 -31.42391 -30.09445 -26.08771 -24.20142 -22.92470 -22.47232 -20.71380 -18.10401 -17.12170 -16.41234 -15.77491 -14.97884 -14.62212 -14.18136 -13.98725 -13.63701 -13.10033 -12.72449 -12.68076 -12.63468 -12.30900 -12.17001 -12.01053 -11.69150 -11.46839 -11.12200 -11.07660 -10.78467 -10.33564 -8.39734 -7.76279 -5.32315 1.43598 1.47425 1.55724 2.51871 3.23237 3.51881 3.55888 4.28152 4.36905 4.50848 4.51800 4.59570 4.72216 4.92407 4.96040 4.98111 5.09220 5.18732 5.23177 5.31115 5.33542 5.44869 5.57086 5.63781 5.69305 5.86121 6.03147 6.50960 7.26121 7.97810 8.45062 9.21187 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.031915 B = 0.018599 C = 0.015744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.121260 B = 1505.119303 C = 1778.027709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.128 4.128 3 C 0.187 3.813 4 H 0.054 0.946 5 C -0.137 4.137 6 N -0.560 5.560 7 C -0.250 4.250 8 H 0.053 0.947 9 C -0.038 4.038 10 N -0.915 5.915 11 Si 0.951 3.049 12 H -0.273 1.273 13 H -0.290 1.290 14 H -0.294 1.294 15 C 0.112 3.888 16 C -0.202 4.202 17 C -0.205 4.205 18 H 0.032 0.968 19 H 0.041 0.959 20 H 0.060 0.940 21 H 0.058 0.942 22 H 0.063 0.937 23 H 0.045 0.955 24 H 0.040 0.960 25 H 0.038 0.962 26 H 0.247 0.753 27 H 0.102 0.898 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.700 -6.813 -2.772 7.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.167 4.167 3 C 0.082 3.918 4 H 0.073 0.927 5 C -0.196 4.196 6 N -0.278 5.278 7 C -0.380 4.380 8 H 0.071 0.929 9 C -0.235 4.235 10 N -0.559 5.559 11 Si 0.780 3.220 12 H -0.198 1.198 13 H -0.217 1.217 14 H -0.222 1.222 15 C 0.003 3.997 16 C -0.241 4.241 17 C -0.246 4.246 18 H 0.051 0.949 19 H 0.060 0.940 20 H 0.079 0.921 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.120 0.880 28 H 0.088 0.912 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.621 -6.660 -2.629 7.187 hybrid contribution -0.591 1.159 0.308 1.337 sum -1.212 -5.501 -2.321 6.092 Atomic orbital electron populations 1.21504 0.96186 1.00224 1.00699 1.21979 0.96275 0.97560 1.00892 1.20241 0.92781 0.90332 0.88490 0.92741 1.21982 0.98130 1.00540 0.98905 1.43610 1.59531 1.25142 0.99511 1.19146 1.12793 0.96020 1.10073 0.92942 1.25709 0.97908 0.98752 1.01101 1.70187 1.26612 1.40980 1.18140 0.85473 0.79539 0.79540 0.77452 1.19809 1.21676 1.22166 1.21167 0.96531 0.99085 0.82936 1.23094 1.03750 0.95698 1.01564 1.23313 0.96213 0.99030 1.05997 0.94869 0.93989 0.92122 0.92371 0.91874 0.93575 0.94083 0.94258 0.94368 0.88047 0.91223 0.88240 0.87841 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 9.80 71.98 0.71 -3.96 16 2 C -0.13 -4.74 5.33 30.59 0.16 -4.57 16 3 C 0.19 8.55 1.76 44.99 0.08 8.63 16 4 H 0.05 2.90 6.14 -2.39 -0.01 2.89 16 5 C -0.14 -5.89 9.05 71.98 0.65 -5.24 16 6 N -0.56 -27.03 2.16 -654.28 -1.41 -28.45 16 7 C -0.25 -13.43 8.26 84.03 0.69 -12.74 16 8 H 0.05 2.88 7.03 -2.91 -0.02 2.86 16 9 C -0.04 -2.09 4.90 84.86 0.42 -1.67 16 10 N -0.91 -52.26 10.24 21.65 0.22 -52.03 16 11 Si 0.95 44.99 29.58 68.60 2.03 47.02 16 12 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 13 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 14 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 15 C 0.11 4.61 5.30 44.99 0.24 4.85 16 16 C -0.20 -7.89 9.79 30.62 0.30 -7.59 16 17 C -0.20 -7.47 10.10 30.62 0.31 -7.17 16 18 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 19 H 0.04 1.69 7.75 -2.39 -0.02 1.67 16 20 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 21 H 0.06 2.02 7.39 -2.38 -0.02 2.01 16 22 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.04 2.05 7.09 -2.39 -0.02 2.03 16 25 H 0.04 1.52 7.04 -2.39 -0.02 1.51 16 26 H 0.25 13.80 8.32 -92.71 -0.77 13.02 16 27 H 0.10 3.86 7.04 -2.39 -0.02 3.85 16 28 H 0.07 3.10 6.83 -2.39 -0.02 3.08 16 29 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 30 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 31 H 0.07 2.68 8.09 -2.39 -0.02 2.66 16 Total: -1.00 -57.76 249.18 5.47 -52.29 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 1.08 Total: 10.63 kcal Atomic # 6 Polarization: -33.02 SS G_CDS: 3.56 Total: -29.46 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -1.19 Total: -80.48 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -57.76 5.47 -52.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307622611.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.780 kcal (2) G-P(sol) polarization free energy of solvation -57.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds