Wall clock time and date at job start Mon Mar 30 2020 02:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46884 * 2 1 4 4 H 1.09003 * 109.47547 * 55.00137 * 3 2 1 5 5 C 1.53004 * 109.46674 * 174.99806 * 3 2 1 6 6 C 1.53001 * 117.49882 * 248.74645 * 5 3 2 7 7 C 1.53008 * 117.49604 * 180.08931 * 5 3 2 8 8 N 1.46496 * 109.47311 * 294.99540 * 3 2 1 9 9 C 1.46500 * 120.00183 * 300.00530 * 8 3 2 10 10 C 1.36940 * 119.99676 * 120.00506 * 8 3 2 11 11 H 1.07996 * 120.00322 * 342.37562 * 10 8 3 12 12 C 1.38810 * 119.99685 * 162.10976 * 10 8 3 13 13 N 1.31625 * 120.00219 * 344.11814 * 12 10 8 14 14 Si 1.86804 * 120.00021 * 164.12416 * 12 10 8 15 15 H 1.48502 * 109.46984 * 59.99882 * 14 12 10 16 16 H 1.48499 * 109.46914 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46878 * 299.99911 * 14 12 10 18 18 H 1.09005 * 109.46911 * 59.99981 * 1 2 3 19 19 H 1.08995 * 109.47483 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.47194 * 300.00241 * 1 2 3 21 21 H 1.08991 * 109.46855 * 239.99597 * 2 1 3 22 22 H 1.08999 * 109.46512 * 119.99797 * 2 1 3 23 23 H 1.08996 * 115.55567 * 34.41424 * 5 3 2 24 24 H 1.09007 * 117.49928 * 359.97438 * 6 5 3 25 25 H 1.09000 * 117.50366 * 145.02137 * 6 5 3 26 26 H 1.09002 * 117.49268 * 214.97875 * 7 5 3 27 27 H 1.09000 * 117.49972 * 359.97131 * 7 5 3 28 28 H 1.09008 * 109.46798 * 264.84517 * 9 8 3 29 29 H 1.08997 * 109.47019 * 24.84227 * 9 8 3 30 30 H 1.08997 * 109.47119 * 144.84692 * 9 8 3 31 31 H 0.97001 * 119.99827 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5649 1.4443 0.1258 6 6 4.1655 1.9736 1.4296 7 6 4.2704 2.8018 0.1465 8 7 1.6525 2.0974 -1.2518 9 6 2.1140 1.5589 -2.5337 10 6 0.8590 3.2131 -1.2237 11 1 0.2894 3.4485 -0.3368 12 6 0.7909 4.0445 -2.3331 13 7 1.7002 3.9536 -3.2805 14 14 -0.5911 5.2925 -2.4817 15 1 -0.5357 6.2315 -1.3326 16 1 -0.4382 6.0519 -3.7487 17 1 -1.8976 4.5866 -2.4817 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8900 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 4.0781 0.6178 -0.3656 24 1 3.4744 2.3210 2.1976 25 1 5.0742 1.4956 1.7957 26 1 5.2480 2.8682 -0.3311 27 1 3.6483 3.6936 0.0701 28 1 3.0171 2.0843 -2.8445 29 1 2.3312 0.4964 -2.4243 30 1 1.3371 1.6954 -3.2859 31 1 1.6528 4.5349 -4.0556 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307650644.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:12 Heat of formation + Delta-G solvation = 38.325009 kcal Electronic energy + Delta-G solvation = -11733.849198 eV Core-core repulsion = 9823.699319 eV Total energy + Delta-G solvation = -1910.149880 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.70020 -34.65985 -32.55186 -30.05137 -26.16459 -25.84702 -22.38242 -21.56646 -20.78541 -18.65276 -16.71005 -15.30962 -14.58061 -14.02157 -13.73035 -13.12647 -12.84119 -12.02645 -11.85439 -11.40392 -10.93360 -10.87866 -10.77142 -10.46026 -10.37769 -10.33073 -10.11422 -9.75510 -9.67512 -9.41452 -9.17734 -8.42612 -6.67263 -5.61909 -3.01457 3.43630 3.49521 3.50339 4.47403 4.67356 5.34392 5.50626 5.55662 5.71620 5.83416 5.96460 6.04360 6.07722 6.18433 6.32668 6.52251 6.60488 6.68328 6.70560 6.82965 6.94616 7.00185 7.10580 7.19145 7.53824 7.83274 7.92124 8.48772 9.34885 10.00739 10.49088 11.42845 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.037845 B = 0.015232 C = 0.013125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.676352 B = 1837.795748 C = 2132.886517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.132 4.132 3 C 0.203 3.797 4 H 0.060 0.940 5 C -0.155 4.155 6 C -0.196 4.196 7 C -0.155 4.155 8 N -0.588 5.588 9 C 0.168 3.832 10 C -0.245 4.245 11 H 0.066 0.934 12 C -0.002 4.002 13 N -0.908 5.908 14 Si 0.899 3.101 15 H -0.285 1.285 16 H -0.292 1.292 17 H -0.286 1.286 18 H 0.068 0.932 19 H 0.034 0.966 20 H 0.042 0.958 21 H 0.055 0.945 22 H 0.047 0.953 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.100 0.900 28 H 0.025 0.975 29 H -0.004 1.004 30 H 0.041 0.959 31 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.545 -5.284 5.709 7.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.171 4.171 3 C 0.095 3.905 4 H 0.078 0.922 5 C -0.175 4.175 6 C -0.234 4.234 7 C -0.192 4.192 8 N -0.310 5.310 9 C 0.023 3.977 10 C -0.375 4.375 11 H 0.084 0.916 12 C -0.200 4.200 13 N -0.553 5.553 14 Si 0.729 3.271 15 H -0.212 1.212 16 H -0.218 1.218 17 H -0.213 1.213 18 H 0.087 0.913 19 H 0.053 0.947 20 H 0.062 0.938 21 H 0.074 0.926 22 H 0.066 0.934 23 H 0.104 0.896 24 H 0.104 0.896 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.118 0.882 28 H 0.043 0.957 29 H 0.015 0.985 30 H 0.060 0.940 31 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.540 -5.174 5.520 7.721 hybrid contribution -0.567 0.766 -0.222 0.978 sum 0.973 -4.409 5.298 6.961 Atomic orbital electron populations 1.21615 0.96134 0.99400 1.02503 1.21942 0.96125 0.98847 1.00191 1.19985 0.88721 0.91647 0.90143 0.92197 1.22989 0.98324 0.97211 0.98989 1.22955 1.02297 1.06282 0.91832 1.22663 1.01001 0.96463 0.99051 1.43923 1.57705 1.29690 0.99654 1.20701 0.98907 0.91106 0.86992 1.19180 1.17538 1.00491 1.00294 0.91575 1.24863 0.98296 0.98141 0.98652 1.70110 1.33173 1.40797 1.11265 0.86416 0.82560 0.81216 0.76869 1.21186 1.21817 1.21304 0.91315 0.94683 0.93841 0.92594 0.93405 0.89600 0.89625 0.90280 0.90397 0.88161 0.95652 0.98529 0.94035 0.93958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.80 37.16 0.36 -2.10 16 2 C -0.13 -2.38 5.34 -26.73 -0.14 -2.52 16 3 C 0.20 4.23 2.29 -67.93 -0.16 4.07 16 4 H 0.06 1.28 7.59 -51.93 -0.39 0.89 16 5 C -0.15 -2.96 4.83 -90.61 -0.44 -3.39 16 6 C -0.20 -3.26 10.18 -26.69 -0.27 -3.53 16 7 C -0.15 -3.02 10.13 -26.69 -0.27 -3.29 16 8 N -0.59 -14.57 2.15 -173.49 -0.37 -14.94 16 9 C 0.17 4.19 8.32 59.85 0.50 4.69 16 10 C -0.25 -6.70 9.64 -15.06 -0.15 -6.84 16 11 H 0.07 1.78 7.79 -52.49 -0.41 1.37 16 12 C 0.00 -0.05 5.06 -17.43 -0.09 -0.14 16 13 N -0.91 -26.62 10.58 55.49 0.59 -26.03 16 14 Si 0.90 22.11 29.58 -169.99 -5.03 17.08 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H 0.07 1.40 7.75 -51.93 -0.40 1.00 16 19 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 20 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 21 H 0.06 1.03 6.49 -51.93 -0.34 0.69 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.09 1.59 8.11 -51.93 -0.42 1.17 16 24 H 0.09 1.38 8.05 -51.93 -0.42 0.96 16 25 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 27 H 0.10 2.25 8.14 -51.93 -0.42 1.83 16 28 H 0.03 0.69 7.46 -51.92 -0.39 0.30 16 29 H 0.00 -0.08 6.36 -51.93 -0.33 -0.41 16 30 H 0.04 1.12 7.07 -51.93 -0.37 0.75 16 31 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 253.06 15.07 3.81 3.81 Total: -1.00 -28.43 253.06 -6.79 -35.22 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -5.14 Total: -2.09 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -0.65 Total: -13.05 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.21 Total: -40.97 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.43 -6.79 -35.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307650644.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.543 kcal (2) G-P(sol) polarization free energy of solvation -28.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds