Wall clock time and date at job start Mon Mar 30 2020 02:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46884 * 2 1 4 4 H 1.09003 * 109.47547 * 55.00137 * 3 2 1 5 5 C 1.53004 * 109.46674 * 174.99806 * 3 2 1 6 6 C 1.53001 * 117.49882 * 248.74645 * 5 3 2 7 7 C 1.53008 * 117.49604 * 180.08931 * 5 3 2 8 8 N 1.46496 * 109.47311 * 294.99540 * 3 2 1 9 9 C 1.46500 * 120.00183 * 300.00530 * 8 3 2 10 10 C 1.36940 * 119.99676 * 120.00506 * 8 3 2 11 11 H 1.07996 * 120.00322 * 342.37562 * 10 8 3 12 12 C 1.38810 * 119.99685 * 162.10976 * 10 8 3 13 13 N 1.31625 * 120.00219 * 344.11814 * 12 10 8 14 14 Si 1.86804 * 120.00021 * 164.12416 * 12 10 8 15 15 H 1.48502 * 109.46984 * 59.99882 * 14 12 10 16 16 H 1.48499 * 109.46914 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46878 * 299.99911 * 14 12 10 18 18 H 1.09005 * 109.46911 * 59.99981 * 1 2 3 19 19 H 1.08995 * 109.47483 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.47194 * 300.00241 * 1 2 3 21 21 H 1.08991 * 109.46855 * 239.99597 * 2 1 3 22 22 H 1.08999 * 109.46512 * 119.99797 * 2 1 3 23 23 H 1.08996 * 115.55567 * 34.41424 * 5 3 2 24 24 H 1.09007 * 117.49928 * 359.97438 * 6 5 3 25 25 H 1.09000 * 117.50366 * 145.02137 * 6 5 3 26 26 H 1.09002 * 117.49268 * 214.97875 * 7 5 3 27 27 H 1.09000 * 117.49972 * 359.97131 * 7 5 3 28 28 H 1.09008 * 109.46798 * 264.84517 * 9 8 3 29 29 H 1.08997 * 109.47019 * 24.84227 * 9 8 3 30 30 H 1.08997 * 109.47119 * 144.84692 * 9 8 3 31 31 H 0.97001 * 119.99827 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5649 1.4443 0.1258 6 6 4.1655 1.9736 1.4296 7 6 4.2704 2.8018 0.1465 8 7 1.6525 2.0974 -1.2518 9 6 2.1140 1.5589 -2.5337 10 6 0.8590 3.2131 -1.2237 11 1 0.2894 3.4485 -0.3368 12 6 0.7909 4.0445 -2.3331 13 7 1.7002 3.9536 -3.2805 14 14 -0.5911 5.2925 -2.4817 15 1 -0.5357 6.2315 -1.3326 16 1 -0.4382 6.0519 -3.7487 17 1 -1.8976 4.5866 -2.4817 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8900 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 4.0781 0.6178 -0.3656 24 1 3.4744 2.3210 2.1976 25 1 5.0742 1.4956 1.7957 26 1 5.2480 2.8682 -0.3311 27 1 3.6483 3.6936 0.0701 28 1 3.0171 2.0843 -2.8445 29 1 2.3312 0.4964 -2.4243 30 1 1.3371 1.6954 -3.2859 31 1 1.6528 4.5349 -4.0556 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307650644.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:12 Heat of formation + Delta-G solvation = 23.223491 kcal Electronic energy + Delta-G solvation = -11734.504049 eV Core-core repulsion = 9823.699319 eV Total energy + Delta-G solvation = -1910.804731 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.33884 -36.40941 -34.30432 -31.96755 -27.98540 -27.76571 -24.27271 -23.01772 -22.28852 -20.33199 -18.75491 -17.15958 -16.22100 -15.81908 -15.31927 -14.88001 -14.66527 -13.76736 -13.57786 -13.02951 -12.82000 -12.69750 -12.37242 -12.23199 -12.18924 -12.07935 -11.94593 -11.49388 -11.35456 -10.96601 -10.77151 -10.49691 -8.71651 -7.74901 -5.15211 1.46189 1.48434 1.54546 2.53827 3.06749 3.37717 3.83598 3.88109 4.23630 4.36488 4.40552 4.56110 4.61359 4.74246 4.87035 4.89287 5.10064 5.16250 5.22027 5.23409 5.37057 5.41514 5.43281 5.62749 5.65716 5.68733 5.80879 6.38770 7.23300 7.99563 8.42117 9.28220 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.037845 B = 0.015232 C = 0.013125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.676352 B = 1837.795748 C = 2132.886517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.124 4.124 3 C 0.197 3.803 4 H 0.051 0.949 5 C -0.165 4.165 6 C -0.157 4.157 7 C -0.177 4.177 8 N -0.598 5.598 9 C 0.187 3.813 10 C -0.246 4.246 11 H 0.067 0.933 12 C -0.057 4.057 13 N -0.939 5.939 14 Si 0.959 3.041 15 H -0.279 1.279 16 H -0.298 1.298 17 H -0.281 1.281 18 H 0.033 0.967 19 H 0.061 0.939 20 H 0.047 0.953 21 H 0.052 0.948 22 H 0.079 0.921 23 H 0.096 0.904 24 H 0.092 0.908 25 H 0.112 0.888 26 H 0.085 0.915 27 H 0.061 0.939 28 H -0.004 1.004 29 H 0.026 0.974 30 H 0.012 0.988 31 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.604 -6.502 7.412 9.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.163 4.163 3 C 0.090 3.910 4 H 0.069 0.931 5 C -0.185 4.185 6 C -0.194 4.194 7 C -0.214 4.214 8 N -0.320 5.320 9 C 0.042 3.958 10 C -0.376 4.376 11 H 0.084 0.916 12 C -0.251 4.251 13 N -0.587 5.587 14 Si 0.788 3.212 15 H -0.205 1.205 16 H -0.224 1.224 17 H -0.208 1.208 18 H 0.053 0.947 19 H 0.080 0.920 20 H 0.066 0.934 21 H 0.071 0.929 22 H 0.097 0.903 23 H 0.114 0.886 24 H 0.111 0.889 25 H 0.130 0.870 26 H 0.103 0.897 27 H 0.080 0.920 28 H 0.015 0.985 29 H 0.044 0.956 30 H 0.030 0.970 31 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.595 -6.413 7.265 9.821 hybrid contribution -0.570 1.101 -0.677 1.413 sum 1.025 -5.312 6.588 8.524 Atomic orbital electron populations 1.21563 0.95985 1.00725 1.00973 1.21860 0.96180 0.96734 1.01513 1.20204 0.90040 0.92875 0.87849 0.93112 1.22917 0.97016 0.97036 1.01574 1.23028 1.02986 1.03073 0.90308 1.22539 1.00862 0.95415 1.02615 1.44076 1.57694 1.29277 1.00974 1.20364 0.96481 0.92319 0.86646 1.19462 1.17336 1.00796 1.00044 0.91559 1.25555 1.00419 1.00382 0.98780 1.70274 1.34800 1.41910 1.11682 0.85456 0.80056 0.79164 0.76508 1.20473 1.22418 1.20793 0.94746 0.91956 0.93423 0.92884 0.90267 0.88577 0.88930 0.87011 0.89694 0.92025 0.98537 0.95596 0.96966 0.94707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 9.80 71.98 0.71 -3.77 16 2 C -0.12 -4.12 5.34 30.60 0.16 -3.96 16 3 C 0.20 7.89 2.29 44.99 0.10 8.00 16 4 H 0.05 2.11 7.59 -2.39 -0.02 2.09 16 5 C -0.17 -5.97 4.83 -10.79 -0.05 -6.02 16 6 C -0.16 -4.68 10.18 30.62 0.31 -4.37 16 7 C -0.18 -6.78 10.13 30.62 0.31 -6.47 16 8 N -0.60 -29.72 2.15 -702.79 -1.51 -31.23 16 9 C 0.19 9.47 8.32 127.77 1.06 10.54 16 10 C -0.25 -13.57 9.64 84.03 0.81 -12.76 16 11 H 0.07 3.58 7.79 -2.91 -0.02 3.56 16 12 C -0.06 -3.25 5.06 84.86 0.43 -2.82 16 13 N -0.94 -56.66 10.58 21.65 0.23 -56.43 16 14 Si 0.96 46.16 29.58 68.60 2.03 48.19 16 15 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 16 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 17 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 18 H 0.03 1.36 7.75 -2.38 -0.02 1.34 16 19 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 20 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 21 H 0.05 1.80 6.49 -2.39 -0.02 1.78 16 22 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 23 H 0.10 3.29 8.11 -2.39 -0.02 3.27 16 24 H 0.09 2.67 8.05 -2.38 -0.02 2.65 16 25 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 26 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 27 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 28 H 0.00 -0.21 7.46 -2.38 -0.02 -0.22 16 29 H 0.03 1.13 6.36 -2.39 -0.02 1.11 16 30 H 0.01 0.65 7.07 -2.39 -0.02 0.63 16 31 H 0.24 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -61.57 253.06 5.66 -55.91 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 1.07 Total: 5.19 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: 3.84 Total: -21.63 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -1.28 Total: -87.67 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -61.57 5.66 -55.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307650644.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.130 kcal (2) G-P(sol) polarization free energy of solvation -61.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds