Wall clock time and date at job start Mon Mar 30 2020 01:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47705 * 2 1 4 4 N 1.46899 * 115.54902 * 302.19130 * 3 2 1 5 5 C 1.46901 * 110.99731 * 279.49328 * 4 3 2 6 6 H 1.09000 * 109.47472 * 338.12956 * 5 4 3 7 7 C 1.53002 * 109.47170 * 98.12311 * 5 4 3 8 8 C 1.50696 * 109.47384 * 218.12240 * 5 4 3 9 9 H 1.07997 * 119.99818 * 0.02562 * 8 5 4 10 10 C 1.37878 * 120.00359 * 179.97438 * 8 5 4 11 11 N 1.31517 * 119.99915 * 0.02562 * 10 8 5 12 12 Si 1.86799 * 120.00253 * 180.02562 * 10 8 5 13 13 H 1.48503 * 109.46903 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47154 * 119.99731 * 12 10 8 15 15 H 1.48500 * 109.47178 * 240.00216 * 12 10 8 16 16 C 1.52997 * 117.51602 * 87.88387 * 3 2 1 17 17 C 1.52997 * 60.00140 * 107.48682 * 16 3 2 18 18 H 1.09005 * 109.46185 * 65.54241 * 1 2 3 19 19 H 1.08997 * 109.47255 * 185.54037 * 1 2 3 20 20 H 1.08996 * 109.47153 * 305.54497 * 1 2 3 21 21 H 1.09001 * 109.47286 * 239.99401 * 2 1 3 22 22 H 1.09003 * 109.47032 * 120.00283 * 2 1 3 23 23 H 1.00907 * 111.00469 * 43.43952 * 4 3 2 24 24 H 1.08998 * 109.47687 * 300.00034 * 7 5 4 25 25 H 1.09002 * 109.47541 * 179.97438 * 7 5 4 26 26 H 1.09001 * 109.47134 * 60.00073 * 7 5 4 27 27 H 0.96997 * 119.99890 * 180.02562 * 11 10 8 28 28 H 1.09009 * 117.49607 * 214.97573 * 16 3 2 29 29 H 1.08999 * 117.50446 * 359.97438 * 16 3 2 30 30 H 1.08993 * 117.50087 * 252.51145 * 17 16 3 31 31 H 1.09002 * 117.50270 * 107.48585 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 1.5857 2.2752 -1.1216 5 6 2.3851 2.0168 -2.3267 6 1 3.3437 1.5838 -2.0410 7 6 1.6358 1.0409 -3.2362 8 6 2.6177 3.3113 -3.0623 9 1 2.2127 4.2337 -2.6733 10 6 3.3486 3.3182 -4.2315 11 7 3.8423 2.1949 -4.7050 12 14 3.6375 4.9229 -5.1429 13 1 2.9827 6.0346 -4.4077 14 1 5.0965 5.1834 -5.2361 15 1 3.0635 4.8265 -6.5091 16 6 2.2286 2.1255 1.3560 17 6 3.4492 1.6936 0.5409 18 1 -0.3632 0.4255 -0.9355 19 1 -0.3633 -1.0228 0.0992 20 1 -0.3633 0.5974 0.8361 21 1 1.8934 -0.5139 -0.8899 22 1 1.8933 -0.5139 0.8900 23 1 0.6031 2.1336 -1.3023 24 1 1.4675 0.1046 -2.7043 25 1 2.2286 0.8495 -4.1306 26 1 0.6771 1.4738 -3.5220 27 1 4.3567 2.1998 -5.5272 28 1 2.0154 3.1929 1.4158 29 1 1.9887 1.5476 2.2484 30 1 4.0126 0.8312 0.8970 31 1 4.0390 2.4766 0.0643 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307662863.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:41 Heat of formation + Delta-G solvation = 12.036483 kcal Electronic energy + Delta-G solvation = -11547.519327 eV Core-core repulsion = 9636.229492 eV Total energy + Delta-G solvation = -1911.289836 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.15946 -34.19311 -31.72227 -31.22393 -27.36169 -25.05911 -23.46811 -21.92476 -20.26543 -18.43171 -16.24536 -15.39408 -14.67740 -14.32528 -13.65572 -13.34309 -12.74797 -12.30272 -11.91979 -11.72313 -11.07917 -11.01322 -10.89711 -10.79033 -10.68348 -10.46281 -10.07558 -9.98482 -9.69955 -9.21166 -8.72981 -8.30495 -7.19990 -5.93091 -3.95689 3.34126 3.41732 3.47502 4.38581 4.49762 5.11127 5.18855 5.38075 5.43730 5.50837 5.79307 5.90636 6.06849 6.16478 6.19362 6.32602 6.50024 6.54264 6.60680 6.82092 6.82833 6.94289 7.15931 7.48723 7.78639 7.96534 8.36995 8.65480 8.68710 9.12350 9.69347 11.13677 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.055000 B = 0.011711 C = 0.010750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.965021 B = 2390.403648 C = 2604.101365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C 0.049 3.951 4 N -0.650 5.650 5 C 0.213 3.787 6 H 0.034 0.966 7 C -0.167 4.167 8 C -0.491 4.491 9 H 0.062 0.938 10 C 0.053 3.947 11 N -0.899 5.899 12 Si 0.895 3.105 13 H -0.273 1.273 14 H -0.286 1.286 15 H -0.286 1.286 16 C -0.172 4.172 17 C -0.166 4.166 18 H 0.056 0.944 19 H 0.048 0.952 20 H 0.053 0.947 21 H 0.067 0.933 22 H 0.056 0.944 23 H 0.327 0.673 24 H 0.009 0.991 25 H 0.087 0.913 26 H 0.026 0.974 27 H 0.258 0.742 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.685 -3.264 7.708 9.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.044 4.044 4 N -0.279 5.279 5 C 0.106 3.894 6 H 0.052 0.948 7 C -0.226 4.226 8 C -0.530 4.530 9 H 0.080 0.920 10 C -0.147 4.147 11 N -0.539 5.539 12 Si 0.723 3.277 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.213 1.213 16 C -0.210 4.210 17 C -0.204 4.204 18 H 0.075 0.925 19 H 0.067 0.933 20 H 0.072 0.928 21 H 0.085 0.915 22 H 0.075 0.925 23 H 0.146 0.854 24 H 0.027 0.973 25 H 0.106 0.894 26 H 0.046 0.954 27 H 0.068 0.932 28 H 0.112 0.888 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.203 -2.753 7.726 8.805 hybrid contribution -0.106 -0.103 -0.920 0.932 sum -3.309 -2.855 6.806 8.088 Atomic orbital electron populations 1.21683 0.95940 1.00788 1.01974 1.21583 0.95930 0.96066 1.01647 1.21447 0.98908 0.91039 0.93026 1.60671 1.06945 1.53602 1.06722 1.19187 0.91734 0.94361 0.84156 0.94841 1.22461 0.99956 0.96642 1.03557 1.21273 1.31646 0.93889 1.06151 0.92011 1.24955 0.96042 0.96267 0.97407 1.69899 1.36606 1.25451 1.21931 0.86486 0.77712 0.83989 0.79475 1.19781 1.21229 1.21262 1.23035 1.03030 1.01046 0.93865 1.22951 0.90918 1.03008 1.03489 0.92527 0.93316 0.92777 0.91457 0.92537 0.85443 0.97254 0.89399 0.95442 0.93242 0.88817 0.90101 0.89906 0.88110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.51 37.16 0.35 -1.74 16 2 C -0.11 -1.83 5.71 -26.73 -0.15 -1.98 16 3 C 0.05 0.90 1.68 -131.60 -0.22 0.68 16 4 N -0.65 -14.14 6.43 -94.25 -0.61 -14.75 16 5 C 0.21 5.41 2.54 -68.87 -0.17 5.23 16 6 H 0.03 0.94 7.05 -51.93 -0.37 0.57 16 7 C -0.17 -4.06 8.91 37.16 0.33 -3.73 16 8 C -0.49 -13.83 8.84 -34.44 -0.30 -14.14 16 9 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 10 C 0.05 1.50 5.30 -17.82 -0.09 1.41 16 11 N -0.90 -26.06 11.32 55.43 0.63 -25.43 16 12 Si 0.89 21.86 29.54 -169.99 -5.02 16.83 16 13 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 C -0.17 -2.81 10.16 -26.73 -0.27 -3.08 16 17 C -0.17 -3.00 9.27 -26.73 -0.25 -3.25 16 18 H 0.06 0.86 7.02 -51.93 -0.36 0.50 16 19 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 20 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 21 H 0.07 1.20 6.62 -51.93 -0.34 0.86 16 22 H 0.06 0.81 8.11 -51.93 -0.42 0.39 16 23 H 0.33 6.77 6.67 -39.29 -0.26 6.51 16 24 H 0.01 0.19 6.33 -51.93 -0.33 -0.14 16 25 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 26 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.10 2.05 8.14 -51.93 -0.42 1.63 16 LS Contribution 251.50 15.07 3.79 3.79 Total: -1.00 -28.56 251.50 -6.90 -35.45 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -4.90 Total: 4.71 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -0.78 Total: -20.60 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.02 Total: -40.18 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.56 -6.90 -35.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307662863.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.490 kcal (2) G-P(sol) polarization free energy of solvation -28.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds