Wall clock time and date at job start Mon Mar 30 2020 01:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47705 * 2 1 4 4 N 1.46899 * 115.54902 * 302.19130 * 3 2 1 5 5 C 1.46901 * 110.99731 * 279.49328 * 4 3 2 6 6 H 1.09000 * 109.47472 * 338.12956 * 5 4 3 7 7 C 1.53002 * 109.47170 * 98.12311 * 5 4 3 8 8 C 1.50696 * 109.47384 * 218.12240 * 5 4 3 9 9 H 1.07997 * 119.99818 * 0.02562 * 8 5 4 10 10 C 1.37878 * 120.00359 * 179.97438 * 8 5 4 11 11 N 1.31517 * 119.99915 * 0.02562 * 10 8 5 12 12 Si 1.86799 * 120.00253 * 180.02562 * 10 8 5 13 13 H 1.48503 * 109.46903 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47154 * 119.99731 * 12 10 8 15 15 H 1.48500 * 109.47178 * 240.00216 * 12 10 8 16 16 C 1.52997 * 117.51602 * 87.88387 * 3 2 1 17 17 C 1.52997 * 60.00140 * 107.48682 * 16 3 2 18 18 H 1.09005 * 109.46185 * 65.54241 * 1 2 3 19 19 H 1.08997 * 109.47255 * 185.54037 * 1 2 3 20 20 H 1.08996 * 109.47153 * 305.54497 * 1 2 3 21 21 H 1.09001 * 109.47286 * 239.99401 * 2 1 3 22 22 H 1.09003 * 109.47032 * 120.00283 * 2 1 3 23 23 H 1.00907 * 111.00469 * 43.43952 * 4 3 2 24 24 H 1.08998 * 109.47687 * 300.00034 * 7 5 4 25 25 H 1.09002 * 109.47541 * 179.97438 * 7 5 4 26 26 H 1.09001 * 109.47134 * 60.00073 * 7 5 4 27 27 H 0.96997 * 119.99890 * 180.02562 * 11 10 8 28 28 H 1.09009 * 117.49607 * 214.97573 * 16 3 2 29 29 H 1.08999 * 117.50446 * 359.97438 * 16 3 2 30 30 H 1.08993 * 117.50087 * 252.51145 * 17 16 3 31 31 H 1.09002 * 117.50270 * 107.48585 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 1.5857 2.2752 -1.1216 5 6 2.3851 2.0168 -2.3267 6 1 3.3437 1.5838 -2.0410 7 6 1.6358 1.0409 -3.2362 8 6 2.6177 3.3113 -3.0623 9 1 2.2127 4.2337 -2.6733 10 6 3.3486 3.3182 -4.2315 11 7 3.8423 2.1949 -4.7050 12 14 3.6375 4.9229 -5.1429 13 1 2.9827 6.0346 -4.4077 14 1 5.0965 5.1834 -5.2361 15 1 3.0635 4.8265 -6.5091 16 6 2.2286 2.1255 1.3560 17 6 3.4492 1.6936 0.5409 18 1 -0.3632 0.4255 -0.9355 19 1 -0.3633 -1.0228 0.0992 20 1 -0.3633 0.5974 0.8361 21 1 1.8934 -0.5139 -0.8899 22 1 1.8933 -0.5139 0.8900 23 1 0.6031 2.1336 -1.3023 24 1 1.4675 0.1046 -2.7043 25 1 2.2286 0.8495 -4.1306 26 1 0.6771 1.4738 -3.5220 27 1 4.3567 2.1998 -5.5272 28 1 2.0154 3.1929 1.4158 29 1 1.9887 1.5476 2.2484 30 1 4.0126 0.8312 0.8970 31 1 4.0390 2.4766 0.0643 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307662863.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:41 Heat of formation + Delta-G solvation = -5.889348 kcal Electronic energy + Delta-G solvation = -11548.296650 eV Core-core repulsion = 9636.229492 eV Total energy + Delta-G solvation = -1912.067158 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.66760 -36.11641 -33.53875 -32.65250 -29.23095 -27.19641 -24.71204 -23.41867 -22.11721 -19.96253 -18.32078 -16.96980 -16.68673 -15.73147 -15.19165 -14.89173 -14.36342 -14.23388 -13.44564 -13.18117 -12.91575 -12.83473 -12.61106 -12.30272 -12.27993 -12.15493 -11.89773 -11.80598 -11.34769 -10.95785 -10.46485 -10.35632 -8.94073 -8.08152 -6.19014 1.40099 1.41726 1.54237 2.43666 2.99044 3.19361 3.56636 3.88027 4.15335 4.17746 4.58299 4.64488 4.67719 4.75095 4.84839 4.89644 5.01731 5.08619 5.13510 5.15667 5.32457 5.39966 5.45309 5.52275 5.72204 5.84954 6.33116 6.72616 6.92454 6.97169 7.50964 8.96853 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.055000 B = 0.011711 C = 0.010750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.965021 B = 2390.403648 C = 2604.101365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.107 4.107 3 C 0.027 3.973 4 N -0.658 5.658 5 C 0.223 3.777 6 H 0.001 0.999 7 C -0.153 4.153 8 C -0.513 4.513 9 H 0.050 0.950 10 C 0.007 3.993 11 N -0.923 5.923 12 Si 0.958 3.042 13 H -0.270 1.270 14 H -0.282 1.282 15 H -0.279 1.279 16 C -0.143 4.143 17 C -0.180 4.180 18 H 0.040 0.960 19 H 0.069 0.931 20 H 0.065 0.935 21 H 0.045 0.955 22 H 0.081 0.919 23 H 0.333 0.667 24 H 0.030 0.970 25 H 0.059 0.941 26 H 0.029 0.971 27 H 0.260 0.740 28 H 0.086 0.914 29 H 0.117 0.883 30 H 0.103 0.897 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.436 -3.408 8.812 10.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 C -0.066 4.066 4 N -0.287 5.287 5 C 0.114 3.886 6 H 0.019 0.981 7 C -0.213 4.213 8 C -0.551 4.551 9 H 0.068 0.932 10 C -0.190 4.190 11 N -0.563 5.563 12 Si 0.784 3.216 13 H -0.195 1.195 14 H -0.208 1.208 15 H -0.205 1.205 16 C -0.180 4.180 17 C -0.218 4.218 18 H 0.060 0.940 19 H 0.088 0.912 20 H 0.084 0.916 21 H 0.063 0.937 22 H 0.099 0.901 23 H 0.152 0.848 24 H 0.049 0.951 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.069 0.931 28 H 0.105 0.895 29 H 0.135 0.865 30 H 0.122 0.878 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.963 -2.900 8.846 10.118 hybrid contribution 0.141 -0.070 -1.212 1.222 sum -3.822 -2.970 7.634 9.039 Atomic orbital electron populations 1.21657 0.94355 1.02282 1.01670 1.21528 0.97257 0.94106 1.01759 1.21700 0.99384 0.92460 0.93020 1.60513 1.06880 1.55183 1.06169 1.18877 0.90996 0.93156 0.85535 0.98074 1.22264 0.99206 0.97494 1.02291 1.21562 1.32086 0.94596 1.06899 0.93201 1.25706 0.95733 0.99428 0.98168 1.70020 1.36885 1.27198 1.22245 0.85505 0.77638 0.80153 0.78298 1.19485 1.20773 1.20501 1.23080 1.00273 1.00994 0.93692 1.22953 0.91161 1.03126 1.04517 0.94048 0.91211 0.91575 0.93673 0.90056 0.84832 0.95072 0.92254 0.95194 0.93099 0.89519 0.86521 0.87821 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.51 71.98 0.68 -2.98 16 2 C -0.11 -3.23 5.71 30.59 0.17 -3.06 16 3 C 0.03 0.96 1.68 3.53 0.01 0.96 16 4 N -0.66 -28.55 6.43 -452.10 -2.91 -31.45 16 5 C 0.22 11.51 2.54 44.17 0.11 11.62 16 6 H 0.00 0.08 7.05 -2.39 -0.02 0.06 16 7 C -0.15 -7.53 8.91 71.98 0.64 -6.88 16 8 C -0.51 -29.40 8.84 25.60 0.23 -29.17 16 9 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 10 C 0.01 0.42 5.30 84.65 0.45 0.87 16 11 N -0.92 -54.31 11.32 21.45 0.24 -54.07 16 12 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 13 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 14 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 15 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 16 C -0.14 -4.31 10.16 30.59 0.31 -4.00 16 17 C -0.18 -6.38 9.27 30.59 0.28 -6.09 16 18 H 0.04 1.18 7.02 -2.38 -0.02 1.16 16 19 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 20 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 21 H 0.04 1.55 6.62 -2.39 -0.02 1.53 16 22 H 0.08 2.05 8.11 -2.39 -0.02 2.03 16 23 H 0.33 13.59 6.67 -89.69 -0.60 12.99 16 24 H 0.03 1.34 6.33 -2.39 -0.02 1.33 16 25 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 26 H 0.03 1.40 8.13 -2.39 -0.02 1.38 16 27 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 28 H 0.09 2.75 8.14 -2.38 -0.02 2.74 16 29 H 0.12 2.72 8.14 -2.39 -0.02 2.71 16 30 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 31 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -61.26 251.50 2.75 -58.51 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.49 Total: 18.60 kcal Atomic # 6 Polarization: -41.62 SS G_CDS: 2.89 Total: -38.73 kcal Atomic # 7 Polarization: -82.86 SS G_CDS: -2.66 Total: -85.52 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -61.26 2.75 -58.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307662863.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.623 kcal (2) G-P(sol) polarization free energy of solvation -61.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds