Wall clock time and date at job start Mon Mar 30 2020 01:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47276 * 2 1 4 4 C 1.52994 * 109.47040 * 120.00177 * 2 1 3 5 5 N 1.46896 * 115.55543 * 295.08579 * 4 2 1 6 6 C 1.46893 * 111.00008 * 268.33289 * 5 4 2 7 7 C 1.50706 * 109.47497 * 174.38546 * 6 5 4 8 8 H 1.08002 * 119.99101 * 359.97438 * 7 6 5 9 9 C 1.37869 * 120.00490 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00038 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00155 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47063 * 60.00209 * 11 9 7 13 13 H 1.48500 * 109.47022 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47243 * 300.00118 * 11 9 7 15 15 C 1.53007 * 117.51819 * 80.78781 * 4 2 1 16 16 C 1.53001 * 59.99884 * 107.48006 * 15 4 2 17 17 H 1.08999 * 109.47298 * 59.91731 * 1 2 3 18 18 H 1.08991 * 109.47303 * 179.97438 * 1 2 3 19 19 H 1.09001 * 109.47056 * 299.92858 * 1 2 3 20 20 H 1.09004 * 109.46608 * 240.00288 * 2 1 3 21 21 H 1.08997 * 109.47009 * 180.02562 * 3 2 1 22 22 H 1.09001 * 109.47345 * 300.00267 * 3 2 1 23 23 H 1.09001 * 109.46936 * 60.00065 * 3 2 1 24 24 H 1.00896 * 111.00315 * 144.37538 * 5 4 2 25 25 H 1.09005 * 109.47383 * 294.38483 * 6 5 4 26 26 H 1.08997 * 109.47672 * 54.38687 * 6 5 4 27 27 H 0.97001 * 120.00550 * 180.02562 * 10 9 7 28 28 H 1.08994 * 117.49800 * 214.96797 * 15 4 2 29 29 H 1.09000 * 117.49385 * 359.97438 * 15 4 2 30 30 H 1.09000 * 117.49705 * 252.50947 * 16 15 4 31 31 H 1.09000 * 117.51916 * 107.48565 * 16 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.7214 -0.0742 2.5289 6 6 2.7967 0.8386 2.9392 7 6 2.3764 1.5847 4.1794 8 1 1.4072 1.3994 4.6185 9 6 3.2290 2.5035 4.7534 10 7 4.4090 2.7294 4.2184 11 14 2.7083 3.4277 6.2910 12 1 2.4376 2.4586 7.3831 13 1 3.7953 4.3506 6.7057 14 1 1.4780 4.2090 6.0062 15 6 2.0708 -2.2507 1.2193 16 6 3.3770 -1.4576 1.1434 17 1 -0.3634 0.5151 -0.8892 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3633 0.5127 0.8906 20 1 1.8933 -0.5138 -0.8901 21 1 3.1300 1.4424 -0.0005 22 1 1.6767 1.9564 -0.8900 23 1 1.6767 1.9563 0.8900 24 1 1.5368 -0.7605 3.2451 25 1 3.6998 0.2654 3.1487 26 1 2.9954 1.5497 2.1375 27 1 5.0091 3.3757 4.6224 28 1 1.8547 -2.7767 2.1492 29 1 1.7273 -2.7433 0.3097 30 1 3.8930 -1.4285 0.1838 31 1 4.0204 -1.4615 2.0232 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307664239.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:14 Heat of formation + Delta-G solvation = 8.649197 kcal Electronic energy + Delta-G solvation = -11452.381699 eV Core-core repulsion = 9540.944979 eV Total energy + Delta-G solvation = -1911.436719 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.50149 -33.41186 -32.85555 -31.16230 -26.68633 -26.11199 -22.60559 -22.09126 -21.04138 -18.39118 -16.26904 -15.13468 -14.94006 -14.51136 -13.46840 -13.35120 -12.64408 -12.49242 -12.24151 -11.77892 -11.31320 -11.18668 -10.97130 -10.82733 -10.67622 -10.52036 -10.16378 -10.01361 -9.81485 -9.23680 -8.95196 -8.41353 -7.23952 -5.99538 -4.00966 3.35075 3.38912 3.42054 4.25652 4.46152 5.09389 5.15292 5.35138 5.35843 5.37660 5.80872 5.86741 5.90820 5.98280 6.19836 6.29302 6.34827 6.45944 6.53105 6.55963 6.75934 6.88119 7.06704 7.41444 7.47208 7.83406 8.19587 8.45449 8.66160 9.08135 9.63282 11.11141 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.052107 B = 0.010792 C = 0.010360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.230104 B = 2593.938066 C = 2702.095897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.041 4.041 3 C -0.144 4.144 4 C 0.071 3.929 5 N -0.650 5.650 6 C 0.191 3.809 7 C -0.513 4.513 8 H 0.060 0.940 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.897 3.103 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.276 1.276 15 C -0.191 4.191 16 C -0.211 4.211 17 H 0.042 0.958 18 H 0.044 0.956 19 H 0.069 0.931 20 H 0.057 0.943 21 H 0.049 0.951 22 H 0.040 0.960 23 H 0.079 0.921 24 H 0.328 0.672 25 H -0.015 1.015 26 H 0.042 0.958 27 H 0.261 0.739 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.205 -5.839 -6.705 9.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.060 4.060 3 C -0.201 4.201 4 C -0.022 4.022 5 N -0.279 5.279 6 C 0.065 3.935 7 C -0.552 4.552 8 H 0.079 0.921 9 C -0.145 4.145 10 N -0.538 5.538 11 Si 0.725 3.275 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.229 4.229 16 C -0.251 4.251 17 H 0.061 0.939 18 H 0.063 0.937 19 H 0.088 0.912 20 H 0.075 0.925 21 H 0.068 0.932 22 H 0.059 0.941 23 H 0.098 0.902 24 H 0.145 0.855 25 H 0.003 0.997 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.423 -5.198 -6.951 9.741 hybrid contribution 0.677 -0.200 1.166 1.363 sum -3.746 -5.397 -5.785 8.754 Atomic orbital electron populations 1.21675 0.95062 1.00805 1.01689 1.20446 0.95717 0.96209 0.93609 1.21870 1.00692 0.95615 1.01933 1.21782 0.96845 0.89606 0.93951 1.60417 1.45445 1.20546 1.01483 1.19738 0.86939 0.90738 0.96126 1.21181 1.01925 1.21977 1.10134 0.92141 1.24963 0.94904 0.97049 0.97596 1.69954 1.08191 1.35086 1.40523 0.86578 0.78071 0.79641 0.83195 1.20354 1.21403 1.20188 1.23216 1.02438 0.94867 1.02398 1.23422 0.92101 1.06733 1.02798 0.93870 0.93714 0.91199 0.92497 0.93168 0.94106 0.90222 0.85527 0.99694 0.93985 0.92940 0.89358 0.89315 0.89541 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.14 37.16 0.34 -1.71 16 2 C -0.04 -0.67 2.83 -90.62 -0.26 -0.93 16 3 C -0.14 -2.60 7.81 37.16 0.29 -2.31 16 4 C 0.07 1.30 1.47 -131.60 -0.19 1.10 16 5 N -0.65 -14.00 6.18 -101.22 -0.63 -14.62 16 6 C 0.19 4.95 4.69 -4.98 -0.02 4.93 16 7 C -0.51 -14.58 9.36 -34.44 -0.32 -14.91 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 11 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 C -0.19 -2.97 9.94 -26.73 -0.27 -3.24 16 16 C -0.21 -3.69 9.49 -26.73 -0.25 -3.95 16 17 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 18 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 19 H 0.07 1.19 8.05 -51.93 -0.42 0.77 16 20 H 0.06 0.85 8.09 -51.93 -0.42 0.43 16 21 H 0.05 0.95 7.87 -51.93 -0.41 0.54 16 22 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.08 1.68 6.52 -51.93 -0.34 1.34 16 24 H 0.33 6.86 8.52 -39.29 -0.33 6.52 16 25 H -0.01 -0.41 7.03 -51.93 -0.36 -0.78 16 26 H 0.04 1.16 5.28 -51.93 -0.27 0.88 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.09 1.33 8.05 -51.93 -0.42 0.91 16 29 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.09 1.79 7.21 -51.93 -0.37 1.41 16 LS Contribution 253.97 15.07 3.83 3.83 Total: -1.00 -29.09 253.97 -6.88 -35.97 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -5.01 Total: 3.66 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -0.78 Total: -19.50 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.11 Total: -40.80 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.09 -6.88 -35.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307664239.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.616 kcal (2) G-P(sol) polarization free energy of solvation -29.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds