Wall clock time and date at job start Mon Mar 30 2020 01:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47276 * 2 1 4 4 C 1.52994 * 109.47040 * 120.00177 * 2 1 3 5 5 N 1.46896 * 115.55543 * 295.08579 * 4 2 1 6 6 C 1.46893 * 111.00008 * 268.33289 * 5 4 2 7 7 C 1.50706 * 109.47497 * 174.38546 * 6 5 4 8 8 H 1.08002 * 119.99101 * 359.97438 * 7 6 5 9 9 C 1.37869 * 120.00490 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00038 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00155 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47063 * 60.00209 * 11 9 7 13 13 H 1.48500 * 109.47022 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47243 * 300.00118 * 11 9 7 15 15 C 1.53007 * 117.51819 * 80.78781 * 4 2 1 16 16 C 1.53001 * 59.99884 * 107.48006 * 15 4 2 17 17 H 1.08999 * 109.47298 * 59.91731 * 1 2 3 18 18 H 1.08991 * 109.47303 * 179.97438 * 1 2 3 19 19 H 1.09001 * 109.47056 * 299.92858 * 1 2 3 20 20 H 1.09004 * 109.46608 * 240.00288 * 2 1 3 21 21 H 1.08997 * 109.47009 * 180.02562 * 3 2 1 22 22 H 1.09001 * 109.47345 * 300.00267 * 3 2 1 23 23 H 1.09001 * 109.46936 * 60.00065 * 3 2 1 24 24 H 1.00896 * 111.00315 * 144.37538 * 5 4 2 25 25 H 1.09005 * 109.47383 * 294.38483 * 6 5 4 26 26 H 1.08997 * 109.47672 * 54.38687 * 6 5 4 27 27 H 0.97001 * 120.00550 * 180.02562 * 10 9 7 28 28 H 1.08994 * 117.49800 * 214.96797 * 15 4 2 29 29 H 1.09000 * 117.49385 * 359.97438 * 15 4 2 30 30 H 1.09000 * 117.49705 * 252.50947 * 16 15 4 31 31 H 1.09000 * 117.51916 * 107.48565 * 16 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.7214 -0.0742 2.5289 6 6 2.7967 0.8386 2.9392 7 6 2.3764 1.5847 4.1794 8 1 1.4072 1.3994 4.6185 9 6 3.2290 2.5035 4.7534 10 7 4.4090 2.7294 4.2184 11 14 2.7083 3.4277 6.2910 12 1 2.4376 2.4586 7.3831 13 1 3.7953 4.3506 6.7057 14 1 1.4780 4.2090 6.0062 15 6 2.0708 -2.2507 1.2193 16 6 3.3770 -1.4576 1.1434 17 1 -0.3634 0.5151 -0.8892 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3633 0.5127 0.8906 20 1 1.8933 -0.5138 -0.8901 21 1 3.1300 1.4424 -0.0005 22 1 1.6767 1.9564 -0.8900 23 1 1.6767 1.9563 0.8900 24 1 1.5368 -0.7605 3.2451 25 1 3.6998 0.2654 3.1487 26 1 2.9954 1.5497 2.1375 27 1 5.0091 3.3757 4.6224 28 1 1.8547 -2.7767 2.1492 29 1 1.7273 -2.7433 0.3097 30 1 3.8930 -1.4285 0.1838 31 1 4.0204 -1.4615 2.0232 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307664239.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:14 Heat of formation + Delta-G solvation = -10.167610 kcal Electronic energy + Delta-G solvation = -11453.197657 eV Core-core repulsion = 9540.944979 eV Total energy + Delta-G solvation = -1912.252677 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.96206 -35.43573 -34.24955 -33.08049 -28.33767 -27.87778 -24.37391 -23.44812 -22.70132 -19.91719 -18.38346 -16.80274 -16.46664 -16.31571 -15.13346 -14.79911 -14.24571 -14.10508 -13.94349 -13.60338 -12.89232 -12.78546 -12.68358 -12.39391 -12.22857 -12.08832 -11.84476 -11.70338 -11.36766 -11.04302 -10.60886 -10.50878 -9.01014 -8.19828 -6.30078 1.39864 1.43239 1.51095 2.40018 2.88210 3.12950 3.57707 3.76711 3.98778 4.04231 4.41253 4.54274 4.59640 4.72543 4.91550 4.95274 5.02338 5.09942 5.18965 5.19877 5.28047 5.31610 5.42978 5.57516 5.61913 5.72570 6.09830 6.52733 6.79911 6.92461 7.40044 8.90865 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.052107 B = 0.010792 C = 0.010360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.230104 B = 2593.938066 C = 2702.095897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.039 4.039 3 C -0.139 4.139 4 C 0.043 3.957 5 N -0.649 5.649 6 C 0.210 3.790 7 C -0.535 4.535 8 H 0.060 0.940 9 C 0.002 3.998 10 N -0.933 5.933 11 Si 0.968 3.032 12 H -0.268 1.268 13 H -0.283 1.283 14 H -0.269 1.269 15 C -0.158 4.158 16 C -0.222 4.222 17 H 0.063 0.937 18 H 0.061 0.939 19 H 0.043 0.957 20 H 0.084 0.916 21 H 0.031 0.969 22 H 0.066 0.934 23 H 0.040 0.960 24 H 0.329 0.671 25 H -0.047 1.047 26 H 0.022 0.978 27 H 0.264 0.736 28 H 0.093 0.907 29 H 0.122 0.878 30 H 0.103 0.897 31 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.454 -6.626 -7.280 11.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.058 4.058 3 C -0.196 4.196 4 C -0.049 4.049 5 N -0.277 5.277 6 C 0.083 3.917 7 C -0.573 4.573 8 H 0.078 0.922 9 C -0.196 4.196 10 N -0.574 5.574 11 Si 0.793 3.207 12 H -0.193 1.193 13 H -0.208 1.208 14 H -0.194 1.194 15 C -0.195 4.195 16 C -0.261 4.261 17 H 0.082 0.918 18 H 0.080 0.920 19 H 0.062 0.938 20 H 0.102 0.898 21 H 0.050 0.950 22 H 0.085 0.915 23 H 0.059 0.941 24 H 0.146 0.854 25 H -0.029 1.029 26 H 0.040 0.960 27 H 0.072 0.928 28 H 0.112 0.888 29 H 0.140 0.860 30 H 0.121 0.879 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.688 -6.005 -7.536 11.189 hybrid contribution 1.082 0.011 1.294 1.687 sum -4.605 -5.994 -6.241 9.803 Atomic orbital electron populations 1.21612 0.93716 1.01859 1.01393 1.20523 0.96809 0.94846 0.93669 1.21784 0.99442 0.97118 1.01257 1.22029 0.98157 0.91843 0.92877 1.60264 1.43612 1.20887 1.02963 1.19330 0.86915 0.90641 0.94819 1.21568 1.02032 1.22593 1.11156 0.92166 1.25890 0.94792 0.97903 1.00981 1.70087 1.09345 1.35768 1.42167 0.85453 0.77874 0.78328 0.79045 1.19279 1.20830 1.19368 1.23313 0.99429 0.92578 1.04180 1.23391 0.92306 1.07926 1.02476 0.91838 0.91953 0.93826 0.89759 0.95009 0.91475 0.94064 0.85363 1.02918 0.95994 0.92765 0.88845 0.86018 0.87905 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 9.14 71.98 0.66 -2.91 16 2 C -0.04 -1.23 2.83 -10.80 -0.03 -1.26 16 3 C -0.14 -5.00 7.81 71.98 0.56 -4.44 16 4 C 0.04 1.54 1.47 3.53 0.01 1.55 16 5 N -0.65 -28.33 6.18 -474.16 -2.93 -31.26 16 6 C 0.21 11.36 4.69 85.56 0.40 11.76 16 7 C -0.54 -31.10 9.36 25.60 0.24 -30.86 16 8 H 0.06 3.42 7.81 -2.91 -0.02 3.39 16 9 C 0.00 0.14 5.46 84.65 0.46 0.60 16 10 N -0.93 -57.25 13.29 21.44 0.28 -56.97 16 11 Si 0.97 45.10 29.54 68.60 2.03 47.12 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 15 C -0.16 -4.45 9.94 30.60 0.30 -4.14 16 16 C -0.22 -7.59 9.49 30.60 0.29 -7.30 16 17 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 18 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 19 H 0.04 1.43 8.05 -2.39 -0.02 1.41 16 20 H 0.08 2.22 8.09 -2.38 -0.02 2.20 16 21 H 0.03 1.21 7.87 -2.39 -0.02 1.20 16 22 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 23 H 0.04 1.78 6.52 -2.39 -0.02 1.77 16 24 H 0.33 13.90 8.52 -89.70 -0.76 13.14 16 25 H -0.05 -2.77 7.03 -2.38 -0.02 -2.79 16 26 H 0.02 1.27 5.28 -2.39 -0.01 1.26 16 27 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 28 H 0.09 2.57 8.05 -2.39 -0.02 2.55 16 29 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.10 3.13 8.14 -2.39 -0.02 3.12 16 31 H 0.06 2.58 7.21 -2.39 -0.02 2.56 16 Total: -1.00 -63.64 253.97 2.60 -61.04 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.33 Total: 17.08 kcal Atomic # 6 Polarization: -39.90 SS G_CDS: 2.89 Total: -37.01 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -2.65 Total: -88.23 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -63.64 2.60 -61.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307664239.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.870 kcal (2) G-P(sol) polarization free energy of solvation -63.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds