Wall clock time and date at job start Mon Mar 30 2020 02:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.43415 * 2 1 4 4 C 1.54892 * 110.48817 * 237.31713 * 2 1 3 5 5 C 1.54886 * 102.74939 * 203.38181 * 4 2 1 6 6 C 1.54269 * 104.19870 * 37.94105 * 5 4 2 7 7 C 1.53879 * 106.59722 * 336.39249 * 6 5 4 8 8 H 1.08999 * 110.07445 * 240.69294 * 7 6 5 9 9 N 1.46497 * 110.03267 * 119.28437 * 7 6 5 10 10 C 1.46497 * 120.00092 * 128.07737 * 9 7 6 11 11 C 1.36938 * 120.00083 * 308.07229 * 9 7 6 12 12 H 1.08006 * 119.99470 * 20.46015 * 11 9 7 13 13 C 1.38805 * 120.00107 * 200.45281 * 11 9 7 14 14 N 1.31617 * 120.00301 * 12.29098 * 13 11 9 15 15 Si 1.86806 * 120.00081 * 192.28954 * 13 11 9 16 16 H 1.48497 * 109.47104 * 90.00114 * 15 13 11 17 17 H 1.48497 * 109.46930 * 210.00334 * 15 13 11 18 18 H 1.48505 * 109.46722 * 329.99951 * 15 13 11 19 19 H 1.08997 * 109.46982 * 297.45840 * 1 2 3 20 20 H 1.08995 * 109.47056 * 57.45867 * 1 2 3 21 21 H 1.09003 * 109.46915 * 177.45923 * 1 2 3 22 22 H 1.08998 * 110.75488 * 321.69602 * 4 2 1 23 23 H 1.09001 * 110.75682 * 84.87820 * 4 2 1 24 24 H 1.09000 * 110.49024 * 156.62081 * 5 4 2 25 25 H 1.09004 * 110.48699 * 279.13447 * 5 4 2 26 26 H 1.09004 * 110.03473 * 217.10962 * 6 5 4 27 27 H 1.08998 * 110.03443 * 95.67085 * 6 5 4 28 28 H 1.08998 * 109.47256 * 94.38717 * 10 9 7 29 29 H 1.08999 * 109.47473 * 214.39210 * 10 9 7 30 30 H 1.09004 * 109.47006 * 334.39005 * 10 9 7 31 31 H 0.97000 * 120.00198 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7835 -1.2212 5 6 3.4907 -1.1989 -0.7585 6 6 3.3165 -1.5397 0.7360 7 6 2.0699 -0.7774 1.2183 8 1 2.3403 -0.0834 2.0141 9 7 1.0587 -1.7222 1.6990 10 6 0.4630 -1.5454 3.0256 11 6 0.6703 -2.7706 0.9082 12 1 1.3076 -3.1043 0.1026 13 6 -0.5422 -3.4044 1.1422 14 7 -1.4241 -2.8593 1.9529 15 14 -0.9224 -5.0311 0.3062 16 1 -0.4556 -6.1496 1.1643 17 1 -2.3875 -5.1480 0.0941 18 1 -0.2263 -5.0887 -1.0043 19 1 -0.3633 0.4739 0.9119 20 1 -0.3633 0.5528 -0.8663 21 1 -0.3633 -1.0267 -0.0456 22 1 1.4581 -1.6618 -1.4202 23 1 2.1221 -0.1416 -2.1008 24 1 3.8316 -2.0738 -1.3120 25 1 4.1903 -0.3725 -0.8843 26 1 4.1928 -1.2155 1.2975 27 1 3.1691 -2.6125 0.8597 28 1 -0.4668 -0.9840 2.9345 29 1 0.2565 -2.5216 3.4643 30 1 1.1561 -0.9990 3.6653 31 1 -2.2716 -3.3020 2.1161 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307681624.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:39 Heat of formation + Delta-G solvation = 12.197257 kcal Electronic energy + Delta-G solvation = -12083.984224 eV Core-core repulsion = 10172.701360 eV Total energy + Delta-G solvation = -1911.282864 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.18294 -33.96407 -30.73254 -30.20341 -26.95807 -25.76846 -24.10231 -21.75355 -19.78946 -18.41260 -16.29579 -15.08677 -14.72619 -13.92498 -13.16797 -13.09816 -12.76321 -12.33492 -11.47941 -11.14883 -10.89672 -10.83234 -10.61777 -10.41476 -10.22284 -10.08898 -9.97116 -9.70963 -9.65118 -9.52318 -9.34520 -8.33301 -6.61257 -5.61873 -3.03850 3.42480 3.49480 3.50026 4.57363 5.40577 5.41982 5.47719 5.63905 5.85827 6.13906 6.30980 6.36276 6.36797 6.49059 6.60947 6.66010 6.72952 6.86189 6.94554 7.02699 7.07673 7.23593 7.26622 7.52377 7.84688 7.89198 7.92488 8.50875 9.36041 10.00956 10.49555 11.42668 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.040890 B = 0.017451 C = 0.015644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.597453 B = 1604.133832 C = 1789.370423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.105 4.105 3 H 0.046 0.954 4 C -0.114 4.114 5 C -0.120 4.120 6 C -0.135 4.135 7 C 0.175 3.825 8 H 0.048 0.952 9 N -0.594 5.594 10 C 0.165 3.835 11 C -0.233 4.233 12 H 0.071 0.929 13 C -0.004 4.004 14 N -0.909 5.909 15 Si 0.896 3.104 16 H -0.290 1.290 17 H -0.293 1.293 18 H -0.281 1.281 19 H 0.038 0.962 20 H 0.016 0.984 21 H 0.100 0.900 22 H 0.075 0.925 23 H 0.044 0.956 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.076 0.924 28 H 0.026 0.974 29 H 0.044 0.956 30 H -0.008 1.008 31 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.960 3.532 -2.821 7.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.126 4.126 3 H 0.064 0.936 4 C -0.152 4.152 5 C -0.157 4.157 6 C -0.175 4.175 7 C 0.067 3.933 8 H 0.067 0.933 9 N -0.316 5.316 10 C 0.020 3.980 11 C -0.363 4.363 12 H 0.089 0.911 13 C -0.201 4.201 14 N -0.556 5.556 15 Si 0.727 3.273 16 H -0.218 1.218 17 H -0.219 1.219 18 H -0.207 1.207 19 H 0.057 0.943 20 H 0.035 0.965 21 H 0.119 0.881 22 H 0.094 0.906 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.094 0.906 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.010 0.990 31 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.778 3.460 -2.737 7.270 hybrid contribution -0.311 -0.845 -0.441 1.003 sum 5.467 2.615 -3.179 6.843 Atomic orbital electron populations 1.21669 0.94165 1.04942 0.97836 1.22378 0.97016 0.96701 0.96527 0.93558 1.22515 0.95853 1.00125 0.96658 1.22258 0.97112 0.99446 0.96931 1.22639 0.97836 1.02453 0.94543 1.20963 0.88781 0.90095 0.93483 0.93346 1.44001 1.45004 1.28100 1.14504 1.20813 0.93918 0.99185 0.84039 1.19085 0.99693 1.05873 1.11616 0.91087 1.24920 0.95771 0.99331 1.00077 1.70079 1.07320 1.37973 1.40206 0.86369 0.77148 0.84652 0.79144 1.21776 1.21938 1.20658 0.94321 0.96466 0.88133 0.90628 0.93742 0.92981 0.93141 0.93734 0.90568 0.95525 0.93677 0.98969 0.94003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 8.48 37.16 0.32 -2.51 16 2 C -0.11 -2.09 3.27 -88.96 -0.29 -2.38 16 3 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.11 -2.10 5.89 -24.74 -0.15 -2.25 16 5 C -0.12 -2.02 6.83 -25.07 -0.17 -2.19 16 6 C -0.14 -2.56 6.04 -25.61 -0.15 -2.71 16 7 C 0.18 3.68 3.35 -66.81 -0.22 3.46 16 8 H 0.05 0.98 7.74 -51.93 -0.40 0.58 16 9 N -0.59 -14.59 1.95 -172.20 -0.34 -14.93 16 10 C 0.17 4.10 8.98 59.85 0.54 4.64 16 11 C -0.23 -6.12 5.86 -15.06 -0.09 -6.21 16 12 H 0.07 1.86 5.90 -52.48 -0.31 1.55 16 13 C 0.00 -0.10 4.87 -17.43 -0.08 -0.19 16 14 N -0.91 -26.02 10.52 55.49 0.58 -25.44 16 15 Si 0.90 21.82 29.57 -169.99 -5.03 16.80 16 16 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 17 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 20 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 21 H 0.10 2.57 5.39 -51.93 -0.28 2.29 16 22 H 0.08 1.56 6.74 -51.93 -0.35 1.21 16 23 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 1.60 6.72 -51.93 -0.35 1.25 16 28 H 0.03 0.71 7.45 -51.93 -0.39 0.32 16 29 H 0.04 1.20 7.09 -51.93 -0.37 0.83 16 30 H -0.01 -0.18 7.80 -51.93 -0.41 -0.59 16 31 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 237.07 15.07 3.57 3.57 Total: -1.00 -27.48 237.07 -6.46 -33.94 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -4.94 Total: -3.60 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -0.31 Total: -10.35 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.25 Total: -40.37 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -27.48 -6.46 -33.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307681624.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.134 kcal (2) G-P(sol) polarization free energy of solvation -27.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds