Wall clock time and date at job start Mon Mar 30 2020 02:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.43802 * 2 1 4 4 C 1.54891 * 110.48694 * 122.54716 * 2 1 3 5 5 C 1.54899 * 102.91318 * 156.52469 * 4 2 1 6 6 C 1.54457 * 104.10263 * 322.29970 * 5 4 2 7 7 C 1.53885 * 106.68750 * 23.34319 * 6 5 4 8 8 H 1.08996 * 110.03314 * 119.43708 * 7 6 5 9 9 N 1.46496 * 110.07012 * 240.85360 * 7 6 5 10 10 C 1.46508 * 119.99549 * 232.33613 * 9 7 6 11 11 C 1.36935 * 120.00554 * 52.33469 * 9 7 6 12 12 H 1.07998 * 119.99854 * 349.16905 * 11 9 7 13 13 C 1.38816 * 120.00062 * 169.16684 * 11 9 7 14 14 N 1.31621 * 120.00126 * 7.38825 * 13 11 9 15 15 Si 1.86796 * 119.99790 * 187.39043 * 13 11 9 16 16 H 1.48500 * 109.47303 * 90.00061 * 15 13 11 17 17 H 1.48506 * 109.46956 * 210.00269 * 15 13 11 18 18 H 1.48503 * 109.47215 * 329.99866 * 15 13 11 19 19 H 1.09003 * 109.46699 * 303.98765 * 1 2 3 20 20 H 1.08997 * 109.47304 * 63.98754 * 1 2 3 21 21 H 1.09000 * 109.46928 * 183.98841 * 1 2 3 22 22 H 1.08998 * 110.75754 * 274.92814 * 4 2 1 23 23 H 1.08999 * 110.75679 * 38.11893 * 4 2 1 24 24 H 1.09003 * 110.48301 * 80.82897 * 5 4 2 25 25 H 1.09002 * 110.48078 * 203.46939 * 5 4 2 26 26 H 1.09001 * 109.86365 * 264.10281 * 6 5 4 27 27 H 1.08999 * 110.12206 * 142.72642 * 6 5 4 28 28 H 1.08997 * 109.46713 * 5.20842 * 10 9 7 29 29 H 1.09000 * 109.46937 * 125.21480 * 10 9 7 30 30 H 1.08999 * 109.46672 * 245.21525 * 10 9 7 31 31 H 0.96998 * 120.00309 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7806 1.2231 5 6 3.4905 -1.2013 0.7643 6 6 3.3165 -1.5415 -0.7323 7 6 2.0698 -0.7803 -1.2164 8 1 2.3411 -0.0881 -2.0135 9 7 1.0583 -1.7255 -1.6955 10 6 0.4694 -1.5560 -3.0263 11 6 0.6631 -2.7673 -0.8996 12 1 1.2133 -2.9980 0.0006 13 6 -0.4447 -3.5270 -1.2499 14 7 -1.0277 -3.3420 -2.4154 15 14 -1.1080 -4.8117 -0.0672 16 1 -2.1245 -4.1905 0.8194 17 1 -1.7321 -5.9178 -0.8369 18 1 0.0053 -5.3483 0.7562 19 1 -0.3633 0.5745 0.8521 20 1 -0.3634 0.4507 -0.9235 21 1 -0.3633 -1.0252 0.0715 22 1 2.1253 -0.1358 2.1003 23 1 1.4561 -1.6566 1.4262 24 1 4.1917 -0.3758 0.8874 25 1 3.8277 -2.0757 1.3208 26 1 3.1692 -2.6147 -0.8535 27 1 4.1928 -1.2187 -1.2945 28 1 0.9692 -0.7366 -3.5430 29 1 0.5932 -2.4756 -3.5982 30 1 -0.5922 -1.3295 -2.9276 31 1 -1.8020 -3.8726 -2.6600 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307681626.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:40 Heat of formation + Delta-G solvation = 17.720736 kcal Electronic energy + Delta-G solvation = -12071.147485 eV Core-core repulsion = 10160.104137 eV Total energy + Delta-G solvation = -1911.043348 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.21881 -34.00266 -30.70639 -30.24757 -26.92569 -25.83816 -24.16025 -21.69483 -19.82186 -18.47300 -16.38893 -15.13844 -14.64627 -13.93350 -13.23676 -13.10739 -12.71849 -12.36868 -11.47480 -11.19774 -10.96909 -10.71191 -10.68628 -10.42996 -10.22562 -10.09680 -9.98202 -9.80338 -9.70491 -9.48396 -9.34544 -8.34890 -6.70463 -5.55926 -2.95146 3.43051 3.49344 3.50364 4.57223 5.37128 5.40386 5.44271 5.64395 5.85283 6.08469 6.26739 6.33073 6.33290 6.44121 6.52807 6.62655 6.70947 6.84279 6.89322 6.95730 7.02383 7.14084 7.24135 7.67988 7.73954 7.88381 8.03898 8.50332 9.39202 10.04276 10.48736 11.44699 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.040492 B = 0.017555 C = 0.015540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.328045 B = 1594.583818 C = 1801.414349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.107 4.107 3 H 0.049 0.951 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.137 4.137 7 C 0.178 3.822 8 H 0.050 0.950 9 N -0.602 5.602 10 C 0.170 3.830 11 C -0.226 4.226 12 H 0.077 0.923 13 C -0.008 4.008 14 N -0.918 5.918 15 Si 0.897 3.103 16 H -0.289 1.289 17 H -0.293 1.293 18 H -0.282 1.282 19 H 0.020 0.980 20 H 0.039 0.961 21 H 0.091 0.909 22 H 0.045 0.955 23 H 0.074 0.926 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.044 0.956 28 H -0.013 1.013 29 H 0.039 0.961 30 H 0.041 0.959 31 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.221 4.706 3.884 8.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.128 4.128 3 H 0.067 0.933 4 C -0.153 4.153 5 C -0.158 4.158 6 C -0.176 4.176 7 C 0.069 3.931 8 H 0.068 0.932 9 N -0.325 5.325 10 C 0.026 3.974 11 C -0.355 4.355 12 H 0.094 0.906 13 C -0.204 4.204 14 N -0.566 5.566 15 Si 0.728 3.272 16 H -0.217 1.217 17 H -0.219 1.219 18 H -0.208 1.208 19 H 0.039 0.961 20 H 0.058 0.942 21 H 0.109 0.891 22 H 0.064 0.936 23 H 0.092 0.908 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.063 0.937 28 H 0.006 0.994 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.065 4.592 3.769 7.807 hybrid contribution -0.408 -0.711 0.626 1.032 sum 4.657 3.881 4.395 7.487 Atomic orbital electron populations 1.21661 0.94566 1.04131 0.98232 1.22401 0.96729 0.96966 0.96666 0.93264 1.22541 0.95999 1.00023 0.96713 1.22299 0.97008 0.99497 0.96990 1.22711 0.97914 1.02576 0.94439 1.20934 0.88454 0.90203 0.93505 0.93199 1.44094 1.45010 1.28369 1.15007 1.21050 0.96184 0.95869 0.84297 1.19188 1.07108 1.05567 1.03680 0.90559 1.24883 0.98357 0.99950 0.97175 1.70208 1.23801 1.42910 1.19701 0.86341 0.79154 0.81170 0.80566 1.21658 1.21938 1.20796 0.96106 0.94159 0.89057 0.93647 0.90760 0.93091 0.92882 0.90513 0.93678 0.99434 0.94294 0.94011 0.94158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 8.45 37.16 0.31 -2.36 16 2 C -0.11 -2.05 3.27 -88.96 -0.29 -2.34 16 3 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.12 -2.07 5.82 -24.73 -0.14 -2.21 16 5 C -0.12 -2.01 6.85 -24.97 -0.17 -2.18 16 6 C -0.14 -2.60 6.03 -25.51 -0.15 -2.75 16 7 C 0.18 3.71 3.36 -66.81 -0.22 3.49 16 8 H 0.05 1.00 7.59 -51.93 -0.39 0.61 16 9 N -0.60 -14.88 1.96 -172.19 -0.34 -15.21 16 10 C 0.17 4.30 9.01 59.85 0.54 4.84 16 11 C -0.23 -5.98 5.95 -15.06 -0.09 -6.07 16 12 H 0.08 1.99 5.55 -52.49 -0.29 1.70 16 13 C -0.01 -0.22 5.46 -17.43 -0.10 -0.32 16 14 N -0.92 -26.61 9.52 55.49 0.53 -26.08 16 15 Si 0.90 21.99 29.56 -169.99 -5.02 16.96 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 20 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 21 H 0.09 2.21 5.59 -51.93 -0.29 1.92 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.07 1.48 6.48 -51.93 -0.34 1.15 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.08 1.64 6.89 -51.93 -0.36 1.29 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 28 H -0.01 -0.29 7.58 -51.93 -0.39 -0.69 16 29 H 0.04 1.07 7.19 -51.93 -0.37 0.69 16 30 H 0.04 1.14 6.94 -51.93 -0.36 0.78 16 31 H 0.25 7.05 8.31 -40.82 -0.34 6.72 16 LS Contribution 235.69 15.07 3.55 3.55 Total: -1.00 -27.80 235.69 -6.49 -34.29 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -4.89 Total: -3.61 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -0.32 Total: -9.91 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.19 Total: -41.29 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -27.80 -6.49 -34.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307681626.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.013 kcal (2) G-P(sol) polarization free energy of solvation -27.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds