Wall clock time and date at job start Mon Mar 30 2020 02:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.43802 * 2 1 4 4 C 1.54891 * 110.48694 * 122.54716 * 2 1 3 5 5 C 1.54899 * 102.91318 * 156.52469 * 4 2 1 6 6 C 1.54457 * 104.10263 * 322.29970 * 5 4 2 7 7 C 1.53885 * 106.68750 * 23.34319 * 6 5 4 8 8 H 1.08996 * 110.03314 * 119.43708 * 7 6 5 9 9 N 1.46496 * 110.07012 * 240.85360 * 7 6 5 10 10 C 1.46508 * 119.99549 * 232.33613 * 9 7 6 11 11 C 1.36935 * 120.00554 * 52.33469 * 9 7 6 12 12 H 1.07998 * 119.99854 * 349.16905 * 11 9 7 13 13 C 1.38816 * 120.00062 * 169.16684 * 11 9 7 14 14 N 1.31621 * 120.00126 * 7.38825 * 13 11 9 15 15 Si 1.86796 * 119.99790 * 187.39043 * 13 11 9 16 16 H 1.48500 * 109.47303 * 90.00061 * 15 13 11 17 17 H 1.48506 * 109.46956 * 210.00269 * 15 13 11 18 18 H 1.48503 * 109.47215 * 329.99866 * 15 13 11 19 19 H 1.09003 * 109.46699 * 303.98765 * 1 2 3 20 20 H 1.08997 * 109.47304 * 63.98754 * 1 2 3 21 21 H 1.09000 * 109.46928 * 183.98841 * 1 2 3 22 22 H 1.08998 * 110.75754 * 274.92814 * 4 2 1 23 23 H 1.08999 * 110.75679 * 38.11893 * 4 2 1 24 24 H 1.09003 * 110.48301 * 80.82897 * 5 4 2 25 25 H 1.09002 * 110.48078 * 203.46939 * 5 4 2 26 26 H 1.09001 * 109.86365 * 264.10281 * 6 5 4 27 27 H 1.08999 * 110.12206 * 142.72642 * 6 5 4 28 28 H 1.08997 * 109.46713 * 5.20842 * 10 9 7 29 29 H 1.09000 * 109.46937 * 125.21480 * 10 9 7 30 30 H 1.08999 * 109.46672 * 245.21525 * 10 9 7 31 31 H 0.96998 * 120.00309 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7806 1.2231 5 6 3.4905 -1.2013 0.7643 6 6 3.3165 -1.5415 -0.7323 7 6 2.0698 -0.7803 -1.2164 8 1 2.3411 -0.0881 -2.0135 9 7 1.0583 -1.7255 -1.6955 10 6 0.4694 -1.5560 -3.0263 11 6 0.6631 -2.7673 -0.8996 12 1 1.2133 -2.9980 0.0006 13 6 -0.4447 -3.5270 -1.2499 14 7 -1.0277 -3.3420 -2.4154 15 14 -1.1080 -4.8117 -0.0672 16 1 -2.1245 -4.1905 0.8194 17 1 -1.7321 -5.9178 -0.8369 18 1 0.0053 -5.3483 0.7562 19 1 -0.3633 0.5745 0.8521 20 1 -0.3634 0.4507 -0.9235 21 1 -0.3633 -1.0252 0.0715 22 1 2.1253 -0.1358 2.1003 23 1 1.4561 -1.6566 1.4262 24 1 4.1917 -0.3758 0.8874 25 1 3.8277 -2.0757 1.3208 26 1 3.1692 -2.6147 -0.8535 27 1 4.1928 -1.2187 -1.2945 28 1 0.9692 -0.7366 -3.5430 29 1 0.5932 -2.4756 -3.5982 30 1 -0.5922 -1.3295 -2.9276 31 1 -1.8020 -3.8726 -2.6600 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307681626.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:40 Heat of formation + Delta-G solvation = 2.675781 kcal Electronic energy + Delta-G solvation = -12071.799883 eV Core-core repulsion = 10160.104137 eV Total energy + Delta-G solvation = -1911.695746 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.85608 -35.88007 -32.65293 -31.82605 -28.57575 -27.92403 -25.77186 -23.62384 -21.28773 -20.18068 -18.33503 -16.89407 -16.40042 -15.66915 -14.98733 -14.78572 -14.50757 -14.06410 -13.28828 -13.01352 -12.83459 -12.66112 -12.55958 -12.08869 -11.94742 -11.88770 -11.62913 -11.39188 -11.30908 -11.14050 -11.03977 -10.44037 -8.71910 -7.66014 -5.05035 1.46362 1.47840 1.54657 2.56239 3.41880 3.71771 3.91615 4.06251 4.30338 4.61640 4.69619 4.82567 4.87589 4.93236 4.94858 5.02699 5.17024 5.22147 5.29704 5.38450 5.47766 5.53607 5.64701 5.72520 5.80470 5.93183 5.97253 6.43707 7.29529 8.05160 8.44087 9.34190 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.040492 B = 0.017555 C = 0.015540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.328045 B = 1594.583818 C = 1801.414349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 H 0.078 0.922 4 C -0.114 4.114 5 C -0.111 4.111 6 C -0.133 4.133 7 C 0.164 3.836 8 H 0.059 0.941 9 N -0.613 5.613 10 C 0.186 3.814 11 C -0.208 4.208 12 H 0.080 0.920 13 C -0.068 4.068 14 N -0.950 5.950 15 Si 0.952 3.048 16 H -0.290 1.290 17 H -0.301 1.301 18 H -0.271 1.271 19 H 0.043 0.957 20 H 0.025 0.975 21 H 0.052 0.948 22 H 0.073 0.927 23 H 0.046 0.954 24 H 0.081 0.919 25 H 0.060 0.940 26 H 0.045 0.955 27 H 0.067 0.933 28 H 0.015 0.985 29 H 0.009 0.991 30 H 0.014 0.986 31 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.893 5.893 5.407 10.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.124 4.124 3 H 0.097 0.903 4 C -0.151 4.151 5 C -0.149 4.149 6 C -0.173 4.173 7 C 0.057 3.943 8 H 0.077 0.923 9 N -0.336 5.336 10 C 0.041 3.959 11 C -0.338 4.338 12 H 0.098 0.902 13 C -0.260 4.260 14 N -0.601 5.601 15 Si 0.782 3.218 16 H -0.218 1.218 17 H -0.228 1.228 18 H -0.196 1.196 19 H 0.062 0.938 20 H 0.044 0.956 21 H 0.071 0.929 22 H 0.091 0.909 23 H 0.065 0.935 24 H 0.099 0.901 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.034 0.966 29 H 0.027 0.973 30 H 0.032 0.968 31 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 6.776 5.797 5.324 10.386 hybrid contribution -0.864 -1.000 0.151 1.330 sum 5.912 4.797 5.474 9.377 Atomic orbital electron populations 1.21530 0.96088 1.01802 0.98475 1.22371 0.95310 0.98429 0.96289 0.90341 1.22503 0.96180 0.99258 0.97196 1.22280 0.96805 1.00939 0.94875 1.22618 0.97669 1.00249 0.96724 1.21289 0.88227 0.90100 0.94706 0.92265 1.44291 1.45746 1.28900 1.14644 1.20706 0.95076 0.95257 0.84850 1.19387 1.06148 1.05126 1.03165 0.90217 1.25530 0.99364 1.02529 0.98566 1.70399 1.24247 1.44210 1.21240 0.85453 0.78611 0.78933 0.78802 1.21772 1.22849 1.19621 0.93808 0.95623 0.92886 0.90884 0.93520 0.90053 0.92170 0.93610 0.91472 0.96643 0.97260 0.96772 0.95140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.89 8.45 71.98 0.61 -4.28 16 2 C -0.10 -3.65 3.27 -9.72 -0.03 -3.69 16 3 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 4 C -0.11 -3.69 5.82 31.89 0.19 -3.51 16 5 C -0.11 -3.26 6.85 31.74 0.22 -3.05 16 6 C -0.13 -4.69 6.03 31.39 0.19 -4.50 16 7 C 0.16 6.47 3.36 45.72 0.15 6.63 16 8 H 0.06 2.21 7.59 -2.39 -0.02 2.19 16 9 N -0.61 -30.17 1.96 -698.70 -1.37 -31.54 16 10 C 0.19 9.54 9.01 127.77 1.15 10.70 16 11 C -0.21 -11.07 5.95 84.03 0.50 -10.57 16 12 H 0.08 4.13 5.55 -2.91 -0.02 4.12 16 13 C -0.07 -3.83 5.46 84.86 0.46 -3.37 16 14 N -0.95 -56.92 9.52 21.65 0.21 -56.71 16 15 Si 0.95 46.00 29.56 68.60 2.03 48.03 16 16 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 17 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 18 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 19 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 20 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 21 H 0.05 2.55 5.59 -2.39 -0.01 2.53 16 22 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.05 1.77 6.48 -2.39 -0.02 1.75 16 24 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.05 1.89 6.89 -2.39 -0.02 1.87 16 27 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.02 0.68 7.58 -2.39 -0.02 0.66 16 29 H 0.01 0.50 7.19 -2.39 -0.02 0.49 16 30 H 0.01 0.79 6.94 -2.39 -0.02 0.77 16 31 H 0.24 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -60.12 235.69 5.38 -54.74 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: 1.08 Total: 1.12 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: 3.44 Total: -15.63 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -1.17 Total: -88.25 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -60.12 5.38 -54.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307681626.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.416 kcal (2) G-P(sol) polarization free energy of solvation -60.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds