Wall clock time and date at job start Mon Mar 30 2020 02:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 110.53587 * 2 1 4 4 C 1.54883 * 110.48854 * 122.61059 * 2 1 3 5 5 C 1.54891 * 102.75034 * 156.62044 * 4 2 1 6 6 C 1.54268 * 104.19718 * 322.06102 * 5 4 2 7 7 C 1.53876 * 106.59592 * 23.60560 * 6 5 4 8 8 H 1.09000 * 110.03310 * 240.66822 * 7 6 5 9 9 N 1.46500 * 110.03013 * 119.28851 * 7 6 5 10 10 C 1.46494 * 120.00109 * 301.44844 * 9 7 6 11 11 C 1.36942 * 120.00119 * 121.45626 * 9 7 6 12 12 H 1.08006 * 119.99658 * 334.44632 * 11 9 7 13 13 C 1.38804 * 120.00355 * 154.44839 * 11 9 7 14 14 N 1.31614 * 120.00389 * 157.01984 * 13 11 9 15 15 Si 1.86806 * 120.00141 * 337.29778 * 13 11 9 16 16 H 1.48501 * 109.47128 * 84.68211 * 15 13 11 17 17 H 1.48492 * 109.47315 * 204.68825 * 15 13 11 18 18 H 1.48503 * 109.46928 * 324.69150 * 15 13 11 19 19 H 1.09002 * 109.47070 * 182.61545 * 1 2 3 20 20 H 1.09007 * 109.46747 * 302.61347 * 1 2 3 21 21 H 1.08993 * 109.47243 * 62.61130 * 1 2 3 22 22 H 1.09004 * 110.75865 * 38.30718 * 4 2 1 23 23 H 1.09003 * 110.91865 * 275.00427 * 4 2 1 24 24 H 1.08996 * 110.48930 * 203.37932 * 5 4 2 25 25 H 1.09002 * 110.48347 * 80.73421 * 5 4 2 26 26 H 1.09000 * 110.02884 * 264.32851 * 6 5 4 27 27 H 1.08991 * 110.07516 * 142.91320 * 6 5 4 28 28 H 1.08995 * 109.47815 * 267.56789 * 10 9 7 29 29 H 1.09006 * 109.47108 * 27.57570 * 10 9 7 30 30 H 1.09003 * 109.47121 * 147.56599 * 10 9 7 31 31 H 0.96999 * 120.00504 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0721 -0.7819 1.2221 5 6 3.4908 -1.1979 0.7599 6 6 3.3167 -1.5404 -0.7341 7 6 2.0700 -0.7788 -1.2173 8 1 1.3180 -1.4822 -1.5749 9 7 2.4345 0.1527 -2.2876 10 6 3.4342 1.1951 -2.0425 11 6 1.8406 0.0491 -3.5172 12 1 1.4444 -0.8999 -3.8473 13 6 1.7479 1.1637 -4.3393 14 7 1.6124 1.0128 -5.6397 15 14 1.8232 2.8779 -3.6008 16 1 3.2420 3.2847 -3.4376 17 1 1.1341 3.8359 -4.5022 18 1 1.1534 2.8758 -2.2754 19 1 -0.3633 -1.0266 0.0469 20 1 -0.3633 0.5539 0.8657 21 1 -0.3633 0.4727 -0.9124 22 1 1.4581 -1.6600 1.4223 23 1 2.1252 -0.1407 2.1020 24 1 3.8317 -2.0721 1.3146 25 1 4.1898 -0.3706 0.8826 26 1 3.1693 -2.6135 -0.8564 27 1 4.1927 -1.2176 -1.2965 28 1 2.9352 2.1082 -1.7182 29 1 4.1234 0.8623 -1.2663 30 1 3.9882 1.3903 -2.9607 31 1 1.5472 1.7917 -6.2142 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307681628.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:42 Heat of formation + Delta-G solvation = 7.485964 kcal Electronic energy + Delta-G solvation = -11848.986215 eV Core-core repulsion = 9937.499054 eV Total energy + Delta-G solvation = -1911.487161 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.37468 -34.41700 -31.28130 -30.73461 -27.58498 -25.95561 -24.55147 -21.99432 -20.01404 -18.50821 -16.74995 -15.77841 -14.79445 -14.34635 -13.54561 -13.30161 -12.87047 -12.50380 -12.17352 -12.07461 -11.77696 -11.34410 -10.75426 -10.48855 -10.38169 -10.30464 -10.15998 -10.06628 -9.98444 -9.79681 -9.38846 -8.50058 -6.89954 -5.90310 -3.22978 3.40262 3.53647 3.57999 4.61219 4.97905 5.14664 5.16196 5.36776 5.50676 5.77124 5.93224 6.02063 6.05991 6.08713 6.14881 6.29354 6.32722 6.35728 6.44494 6.52872 6.57849 6.73569 6.78986 6.82881 6.95750 7.08750 8.04271 8.39153 9.03466 9.80684 10.16113 11.26236 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.051014 B = 0.014789 C = 0.014120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.740268 B = 1892.895901 C = 1982.565430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.116 4.116 3 H 0.070 0.930 4 C -0.119 4.119 5 C -0.122 4.122 6 C -0.141 4.141 7 C 0.178 3.822 8 H 0.072 0.928 9 N -0.603 5.603 10 C 0.108 3.892 11 C -0.260 4.260 12 H 0.084 0.916 13 C 0.025 3.975 14 N -0.909 5.909 15 Si 0.887 3.113 16 H -0.288 1.288 17 H -0.307 1.307 18 H -0.278 1.278 19 H 0.048 0.952 20 H 0.040 0.960 21 H 0.060 0.940 22 H 0.062 0.938 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.004 0.996 29 H 0.037 0.963 30 H 0.052 0.948 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.660 -2.314 12.086 12.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.136 4.136 3 H 0.088 0.912 4 C -0.157 4.157 5 C -0.160 4.160 6 C -0.180 4.180 7 C 0.071 3.929 8 H 0.090 0.910 9 N -0.325 5.325 10 C -0.037 4.037 11 C -0.388 4.388 12 H 0.102 0.898 13 C -0.174 4.174 14 N -0.552 5.552 15 Si 0.718 3.282 16 H -0.215 1.215 17 H -0.236 1.236 18 H -0.204 1.204 19 H 0.067 0.933 20 H 0.060 0.940 21 H 0.079 0.921 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.021 0.979 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.647 -2.240 11.885 12.206 hybrid contribution -0.009 1.158 0.328 1.204 sum 1.637 -1.082 12.212 12.369 Atomic orbital electron populations 1.21691 0.95544 1.00846 1.01233 1.22550 0.95528 1.00004 0.95553 0.91150 1.22523 0.96327 0.99468 0.97414 1.22315 0.96912 1.00054 0.96707 1.22693 1.00605 0.99821 0.94872 1.21139 0.93695 0.91002 0.87111 0.91003 1.44284 1.43636 1.34808 1.09734 1.21257 0.91762 0.91117 0.99580 1.18933 1.34275 0.95713 0.89895 0.89791 1.25213 0.99391 0.97607 0.95202 1.69872 1.52974 1.29886 1.02454 0.86967 0.77192 0.85838 0.78193 1.21500 1.23577 1.20448 0.93259 0.94047 0.92092 0.91932 0.92681 0.92682 0.92349 0.92584 0.91361 0.97855 0.94478 0.92945 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.12 37.16 0.34 -1.95 16 2 C -0.12 -2.05 3.05 -88.96 -0.27 -2.33 16 3 H 0.07 1.37 6.97 -51.93 -0.36 1.01 16 4 C -0.12 -1.71 6.33 -24.74 -0.16 -1.87 16 5 C -0.12 -1.75 6.83 -25.07 -0.17 -1.92 16 6 C -0.14 -2.41 5.96 -25.61 -0.15 -2.56 16 7 C 0.18 3.58 2.95 -66.81 -0.20 3.38 16 8 H 0.07 1.50 7.61 -51.93 -0.40 1.10 16 9 N -0.60 -14.60 2.58 -172.20 -0.44 -15.05 16 10 C 0.11 2.45 6.94 59.84 0.42 2.86 16 11 C -0.26 -7.40 9.95 -15.06 -0.15 -7.55 16 12 H 0.08 2.54 8.05 -52.48 -0.42 2.12 16 13 C 0.02 0.73 5.21 -17.44 -0.09 0.64 16 14 N -0.91 -28.38 13.97 55.49 0.78 -27.60 16 15 Si 0.89 23.23 24.04 -169.99 -4.09 19.14 16 16 H -0.29 -7.26 6.52 56.52 0.37 -6.90 16 17 H -0.31 -8.17 7.11 56.52 0.40 -7.77 16 18 H -0.28 -7.24 6.93 56.52 0.39 -6.84 16 19 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 20 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 21 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 22 H 0.06 0.83 8.04 -51.93 -0.42 0.42 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.07 1.25 6.95 -51.93 -0.36 0.89 16 28 H 0.00 0.09 4.93 -51.93 -0.26 -0.17 16 29 H 0.04 0.72 6.86 -51.93 -0.36 0.37 16 30 H 0.05 1.26 6.66 -51.93 -0.35 0.92 16 31 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 238.84 15.07 3.60 3.60 Total: -1.00 -30.27 238.84 -5.64 -35.92 By element: Atomic # 1 Polarization: 0.33 SS G_CDS: -5.05 Total: -4.72 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -0.44 Total: -11.29 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.33 Total: -42.65 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -4.09 Total: 19.14 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -30.27 -5.64 -35.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307681628.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.402 kcal (2) G-P(sol) polarization free energy of solvation -30.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds