Wall clock time and date at job start Mon Mar 30 2020 02:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 110.53587 * 2 1 4 4 C 1.54883 * 110.48854 * 122.61059 * 2 1 3 5 5 C 1.54891 * 102.75034 * 156.62044 * 4 2 1 6 6 C 1.54268 * 104.19718 * 322.06102 * 5 4 2 7 7 C 1.53876 * 106.59592 * 23.60560 * 6 5 4 8 8 H 1.09000 * 110.03310 * 240.66822 * 7 6 5 9 9 N 1.46500 * 110.03013 * 119.28851 * 7 6 5 10 10 C 1.46494 * 120.00109 * 301.44844 * 9 7 6 11 11 C 1.36942 * 120.00119 * 121.45626 * 9 7 6 12 12 H 1.08006 * 119.99658 * 334.44632 * 11 9 7 13 13 C 1.38804 * 120.00355 * 154.44839 * 11 9 7 14 14 N 1.31614 * 120.00389 * 157.01984 * 13 11 9 15 15 Si 1.86806 * 120.00141 * 337.29778 * 13 11 9 16 16 H 1.48501 * 109.47128 * 84.68211 * 15 13 11 17 17 H 1.48492 * 109.47315 * 204.68825 * 15 13 11 18 18 H 1.48503 * 109.46928 * 324.69150 * 15 13 11 19 19 H 1.09002 * 109.47070 * 182.61545 * 1 2 3 20 20 H 1.09007 * 109.46747 * 302.61347 * 1 2 3 21 21 H 1.08993 * 109.47243 * 62.61130 * 1 2 3 22 22 H 1.09004 * 110.75865 * 38.30718 * 4 2 1 23 23 H 1.09003 * 110.91865 * 275.00427 * 4 2 1 24 24 H 1.08996 * 110.48930 * 203.37932 * 5 4 2 25 25 H 1.09002 * 110.48347 * 80.73421 * 5 4 2 26 26 H 1.09000 * 110.02884 * 264.32851 * 6 5 4 27 27 H 1.08991 * 110.07516 * 142.91320 * 6 5 4 28 28 H 1.08995 * 109.47815 * 267.56789 * 10 9 7 29 29 H 1.09006 * 109.47108 * 27.57570 * 10 9 7 30 30 H 1.09003 * 109.47121 * 147.56599 * 10 9 7 31 31 H 0.96999 * 120.00504 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0721 -0.7819 1.2221 5 6 3.4908 -1.1979 0.7599 6 6 3.3167 -1.5404 -0.7341 7 6 2.0700 -0.7788 -1.2173 8 1 1.3180 -1.4822 -1.5749 9 7 2.4345 0.1527 -2.2876 10 6 3.4342 1.1951 -2.0425 11 6 1.8406 0.0491 -3.5172 12 1 1.4444 -0.8999 -3.8473 13 6 1.7479 1.1637 -4.3393 14 7 1.6124 1.0128 -5.6397 15 14 1.8232 2.8779 -3.6008 16 1 3.2420 3.2847 -3.4376 17 1 1.1341 3.8359 -4.5022 18 1 1.1534 2.8758 -2.2754 19 1 -0.3633 -1.0266 0.0469 20 1 -0.3633 0.5539 0.8657 21 1 -0.3633 0.4727 -0.9124 22 1 1.4581 -1.6600 1.4223 23 1 2.1252 -0.1407 2.1020 24 1 3.8317 -2.0721 1.3146 25 1 4.1898 -0.3706 0.8826 26 1 3.1693 -2.6135 -0.8564 27 1 4.1927 -1.2176 -1.2965 28 1 2.9352 2.1082 -1.7182 29 1 4.1234 0.8623 -1.2663 30 1 3.9882 1.3903 -2.9607 31 1 1.5472 1.7917 -6.2142 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307681628.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:41 Heat of formation + Delta-G solvation = -11.667580 kcal Electronic energy + Delta-G solvation = -11849.816775 eV Core-core repulsion = 9937.499054 eV Total energy + Delta-G solvation = -1912.317721 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.86951 -36.25188 -33.41820 -32.05197 -29.09921 -27.92463 -26.02010 -23.82717 -21.26041 -20.05496 -18.88964 -17.58439 -16.57315 -15.74430 -15.24670 -14.87737 -14.52295 -14.23945 -13.95588 -13.84398 -13.37852 -12.84706 -12.30584 -12.18476 -12.13421 -11.98683 -11.74366 -11.56888 -11.36731 -11.30738 -11.24820 -10.67147 -8.91075 -8.18176 -5.46411 1.30044 1.38869 1.48886 2.42062 3.07001 3.34914 3.82809 3.91988 4.12037 4.45333 4.55176 4.61014 4.69234 4.69554 4.74050 4.76927 4.90884 4.96170 5.06700 5.08935 5.18157 5.31914 5.39551 5.52339 5.54220 5.63645 5.87531 6.13236 6.94869 7.66799 8.03219 9.02395 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.051014 B = 0.014789 C = 0.014120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.740268 B = 1892.895901 C = 1982.565430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 H 0.055 0.945 4 C -0.108 4.108 5 C -0.114 4.114 6 C -0.137 4.137 7 C 0.166 3.834 8 H 0.053 0.947 9 N -0.615 5.615 10 C 0.109 3.891 11 C -0.248 4.248 12 H 0.050 0.950 13 C -0.033 4.033 14 N -0.956 5.956 15 Si 0.948 3.052 16 H -0.270 1.270 17 H -0.313 1.313 18 H -0.274 1.274 19 H 0.062 0.938 20 H 0.065 0.935 21 H 0.024 0.976 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.003 0.997 29 H 0.072 0.928 30 H 0.033 0.967 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.399 -2.180 15.063 15.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.136 4.136 3 H 0.073 0.927 4 C -0.146 4.146 5 C -0.152 4.152 6 C -0.176 4.176 7 C 0.060 3.940 8 H 0.071 0.929 9 N -0.338 5.338 10 C -0.036 4.036 11 C -0.378 4.378 12 H 0.068 0.932 13 C -0.227 4.227 14 N -0.603 5.603 15 Si 0.778 3.222 16 H -0.196 1.196 17 H -0.243 1.243 18 H -0.200 1.200 19 H 0.081 0.919 20 H 0.084 0.916 21 H 0.044 0.956 22 H 0.095 0.905 23 H 0.095 0.905 24 H 0.100 0.900 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.021 0.979 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.401 -2.120 14.919 15.258 hybrid contribution -0.250 0.988 -0.593 1.179 sum 2.151 -1.132 14.326 14.531 Atomic orbital electron populations 1.21675 0.95202 1.01768 1.00481 1.22470 0.95881 0.99212 0.96000 0.92653 1.22480 0.96067 0.99797 0.96233 1.22295 0.97146 1.01430 0.94298 1.22600 0.98129 0.99860 0.97002 1.21417 0.95040 0.90527 0.87038 0.92892 1.44404 1.44010 1.35886 1.09483 1.21258 0.91730 0.90785 0.99779 1.18885 1.32992 0.94338 0.91593 0.93185 1.25803 1.00367 1.01189 0.95372 1.69991 1.55732 1.30741 1.03805 0.85959 0.77947 0.81167 0.77096 1.19633 1.24254 1.20016 0.91881 0.91631 0.95645 0.90464 0.90473 0.89952 0.91854 0.91639 0.92793 0.97886 0.90949 0.94816 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 9.12 71.98 0.66 -3.60 16 2 C -0.12 -3.80 3.05 -9.72 -0.03 -3.83 16 3 H 0.05 2.00 6.97 -2.38 -0.02 1.99 16 4 C -0.11 -2.61 6.33 31.88 0.20 -2.40 16 5 C -0.11 -2.76 6.83 31.67 0.22 -2.54 16 6 C -0.14 -4.35 5.96 31.32 0.19 -4.16 16 7 C 0.17 6.48 2.95 45.72 0.13 6.62 16 8 H 0.05 2.22 7.61 -2.39 -0.02 2.21 16 9 N -0.61 -29.67 2.58 -698.73 -1.80 -31.47 16 10 C 0.11 4.78 6.94 127.77 0.89 5.66 16 11 C -0.25 -14.52 9.95 84.03 0.84 -13.68 16 12 H 0.05 3.19 8.05 -2.91 -0.02 3.17 16 13 C -0.03 -1.96 5.21 84.86 0.44 -1.52 16 14 N -0.96 -61.60 13.97 21.65 0.30 -61.30 16 15 Si 0.95 48.51 24.04 68.60 1.65 50.16 16 16 H -0.27 -12.94 6.52 99.48 0.65 -12.29 16 17 H -0.31 -16.25 7.11 99.48 0.71 -15.54 16 18 H -0.27 -13.70 6.93 99.48 0.69 -13.01 16 19 H 0.06 1.79 8.12 -2.39 -0.02 1.77 16 20 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 21 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.08 1.67 8.04 -2.38 -0.02 1.65 16 23 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.05 1.87 6.95 -2.39 -0.02 1.85 16 28 H 0.00 0.15 4.93 -2.39 -0.01 0.14 16 29 H 0.07 2.63 6.86 -2.38 -0.02 2.62 16 30 H 0.03 1.59 6.66 -2.39 -0.02 1.57 16 31 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 Total: -1.00 -66.19 238.84 4.68 -61.51 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: 1.00 Total: 0.56 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 3.53 Total: -19.46 kcal Atomic # 7 Polarization: -91.27 SS G_CDS: -1.50 Total: -92.77 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 1.65 Total: 50.16 kcal Total: -66.19 4.68 -61.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307681628.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.844 kcal (2) G-P(sol) polarization free energy of solvation -66.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds