Wall clock time and date at job start Mon Mar 30 2020 01:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47150 * 2 1 4 4 C 1.53001 * 115.56089 * 34.30745 * 3 2 1 5 5 C 1.52997 * 117.49537 * 248.62494 * 3 2 1 6 6 C 1.53000 * 117.49776 * 180.02562 * 3 2 1 7 7 H 1.09004 * 117.49237 * 214.97568 * 6 3 2 8 8 N 1.46890 * 117.50145 * 359.97438 * 6 3 2 9 9 C 1.46901 * 111.00186 * 205.01407 * 8 6 3 10 10 C 1.50702 * 109.47365 * 179.97438 * 9 8 6 11 11 H 1.08004 * 119.99598 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00013 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00133 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99807 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47361 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47051 * 120.00292 * 14 12 10 17 17 H 1.48503 * 109.47331 * 240.00067 * 14 12 10 18 18 H 1.08998 * 109.47042 * 299.99775 * 1 2 3 19 19 H 1.09000 * 109.47170 * 60.00201 * 1 2 3 20 20 H 1.09002 * 109.47071 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.47409 * 239.99899 * 2 1 3 22 22 H 1.09000 * 109.47170 * 119.99799 * 2 1 3 23 23 H 1.08996 * 109.47111 * 205.68891 * 4 3 2 24 24 H 1.09000 * 109.47300 * 325.69419 * 4 3 2 25 25 H 1.09004 * 109.46610 * 85.68977 * 4 3 2 26 26 H 1.08999 * 117.49685 * 145.02116 * 5 3 2 27 27 H 1.08997 * 117.50044 * 359.97438 * 5 3 2 28 28 H 1.00906 * 110.99842 * 328.96544 * 8 6 3 29 29 H 1.09002 * 109.46966 * 299.99747 * 9 8 6 30 30 H 1.09000 * 109.47207 * 59.99599 * 9 8 6 31 31 H 0.97000 * 120.00372 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.1851 2.4450 0.7780 5 6 2.7418 1.9436 -1.2638 6 6 3.5550 1.6562 -0.0006 7 1 3.9429 2.5109 0.5536 8 7 4.4086 0.4607 -0.0006 9 6 5.7262 0.7546 0.5788 10 6 6.5717 -0.4927 0.5624 11 1 6.1705 -1.4118 0.1613 12 6 7.8577 -0.4604 1.0585 13 7 8.3464 0.6588 1.5464 14 14 8.9055 -2.0067 1.0388 15 1 8.1289 -3.1233 0.4429 16 1 10.1271 -1.7666 0.2293 17 1 9.2938 -2.3593 2.4282 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 1.8933 -0.5138 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 1.3351 3.4444 0.3695 24 1 0.1338 2.1707 0.6907 25 1 1.4776 2.4339 1.8280 26 1 2.5946 2.9875 -1.5409 27 1 2.8406 1.2455 -2.0950 28 1 3.9620 -0.3025 0.4855 29 1 6.2151 1.5331 -0.0069 30 1 5.6032 1.0963 1.6065 31 1 9.2510 0.6816 1.8958 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307700099.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:39 Heat of formation + Delta-G solvation = 6.427541 kcal Electronic energy + Delta-G solvation = -11037.224221 eV Core-core repulsion = 9125.691163 eV Total energy + Delta-G solvation = -1911.533058 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.47821 -34.05900 -32.27400 -30.98613 -27.86431 -25.95417 -23.68627 -21.85952 -20.51826 -18.25587 -16.38141 -15.19560 -14.86460 -14.48144 -14.09022 -13.32086 -12.97142 -12.65006 -12.31707 -11.77947 -11.75685 -11.57862 -11.12426 -10.99287 -10.75687 -10.67719 -10.51340 -10.01439 -9.83891 -9.24641 -8.96863 -8.46522 -7.17212 -6.02770 -4.04803 3.31517 3.38558 3.43892 4.21840 4.43116 4.91754 5.06524 5.17650 5.33128 5.38795 5.44546 5.72648 5.76085 5.91226 5.99446 6.07073 6.09713 6.23347 6.28817 6.38662 6.42864 6.53441 6.72288 7.29513 7.43562 7.80712 8.14733 8.41418 8.62899 9.04838 9.60135 11.08481 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.065938 B = 0.008265 C = 0.007761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.537863 B = 3386.845822 C = 3606.710407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.150 4.150 4 C -0.117 4.117 5 C -0.169 4.169 6 C 0.038 3.962 7 H 0.089 0.911 8 N -0.659 5.659 9 C 0.195 3.805 10 C -0.514 4.514 11 H 0.063 0.937 12 C 0.055 3.945 13 N -0.898 5.898 14 Si 0.899 3.101 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.285 1.285 18 H 0.055 0.945 19 H 0.052 0.948 20 H 0.049 0.951 21 H 0.069 0.931 22 H 0.062 0.938 23 H 0.052 0.948 24 H 0.063 0.937 25 H 0.053 0.947 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.331 0.669 29 H 0.029 0.971 30 H -0.012 1.012 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.765 1.057 -1.780 12.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.151 4.151 4 C -0.175 4.175 5 C -0.207 4.207 6 C -0.073 4.073 7 H 0.107 0.893 8 N -0.289 5.289 9 C 0.068 3.932 10 C -0.553 4.553 11 H 0.081 0.919 12 C -0.146 4.146 13 N -0.537 5.537 14 Si 0.727 3.273 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.211 1.211 18 H 0.074 0.926 19 H 0.071 0.929 20 H 0.068 0.932 21 H 0.087 0.913 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.150 0.850 29 H 0.047 0.953 30 H 0.005 0.995 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.359 1.202 -2.336 12.636 hybrid contribution 0.559 -0.578 0.924 1.225 sum -11.801 0.624 -1.412 11.901 Atomic orbital electron populations 1.21818 0.96237 1.00935 1.01510 1.20907 0.94942 0.93933 1.02288 1.21848 0.94975 0.96252 1.02034 1.21435 0.99298 0.97353 0.99367 1.23335 1.04417 1.00588 0.92394 1.22565 0.88816 0.96340 0.99609 0.89321 1.60426 1.04329 1.04668 1.59472 1.19612 0.83932 0.97363 0.92290 1.21228 0.98068 0.96303 1.39705 0.91916 1.24991 0.97865 0.96418 0.95316 1.69973 1.16398 1.25959 1.41410 0.86420 0.80201 0.83111 0.77556 1.19646 1.20964 1.21071 0.92611 0.92908 0.93195 0.91270 0.91977 0.92939 0.91851 0.92758 0.89825 0.88851 0.84977 0.95292 0.99466 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.92 37.16 0.33 -1.34 16 2 C -0.08 -1.17 5.06 -26.73 -0.14 -1.31 16 3 C -0.15 -2.27 2.47 -154.51 -0.38 -2.65 16 4 C -0.12 -1.50 9.49 37.16 0.35 -1.15 16 5 C -0.17 -2.73 9.75 -26.75 -0.26 -2.99 16 6 C 0.04 0.73 5.96 -67.74 -0.40 0.32 16 7 H 0.09 1.75 7.90 -51.93 -0.41 1.34 16 8 N -0.66 -14.74 6.55 -108.02 -0.71 -15.45 16 9 C 0.19 5.26 5.29 -4.97 -0.03 5.24 16 10 C -0.51 -14.89 9.32 -34.44 -0.32 -15.22 16 11 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 14 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 15 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H 0.05 0.59 6.45 -51.93 -0.33 0.26 16 19 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 20 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.07 1.03 7.90 -51.93 -0.41 0.62 16 22 H 0.06 0.91 7.59 -51.93 -0.39 0.52 16 23 H 0.05 0.64 7.90 -51.93 -0.41 0.23 16 24 H 0.06 0.70 5.59 -51.93 -0.29 0.41 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16 27 H 0.09 1.55 8.05 -51.93 -0.42 1.13 16 28 H 0.33 7.08 7.19 -39.29 -0.28 6.80 16 29 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 30 H -0.01 -0.36 8.14 -51.93 -0.42 -0.78 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 255.84 15.07 3.86 3.86 Total: -1.00 -29.91 255.84 -7.10 -37.02 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -5.03 Total: 1.74 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -0.94 Total: -17.58 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.03 Total: -41.95 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.91 -7.10 -37.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307700099.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.445 kcal (2) G-P(sol) polarization free energy of solvation -29.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds