Wall clock time and date at job start Mon Mar 30 2020 01:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47150 * 2 1 4 4 C 1.53001 * 115.56089 * 34.30745 * 3 2 1 5 5 C 1.52997 * 117.49537 * 248.62494 * 3 2 1 6 6 C 1.53000 * 117.49776 * 180.02562 * 3 2 1 7 7 H 1.09004 * 117.49237 * 214.97568 * 6 3 2 8 8 N 1.46890 * 117.50145 * 359.97438 * 6 3 2 9 9 C 1.46901 * 111.00186 * 205.01407 * 8 6 3 10 10 C 1.50702 * 109.47365 * 179.97438 * 9 8 6 11 11 H 1.08004 * 119.99598 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00013 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00133 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99807 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47361 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47051 * 120.00292 * 14 12 10 17 17 H 1.48503 * 109.47331 * 240.00067 * 14 12 10 18 18 H 1.08998 * 109.47042 * 299.99775 * 1 2 3 19 19 H 1.09000 * 109.47170 * 60.00201 * 1 2 3 20 20 H 1.09002 * 109.47071 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.47409 * 239.99899 * 2 1 3 22 22 H 1.09000 * 109.47170 * 119.99799 * 2 1 3 23 23 H 1.08996 * 109.47111 * 205.68891 * 4 3 2 24 24 H 1.09000 * 109.47300 * 325.69419 * 4 3 2 25 25 H 1.09004 * 109.46610 * 85.68977 * 4 3 2 26 26 H 1.08999 * 117.49685 * 145.02116 * 5 3 2 27 27 H 1.08997 * 117.50044 * 359.97438 * 5 3 2 28 28 H 1.00906 * 110.99842 * 328.96544 * 8 6 3 29 29 H 1.09002 * 109.46966 * 299.99747 * 9 8 6 30 30 H 1.09000 * 109.47207 * 59.99599 * 9 8 6 31 31 H 0.97000 * 120.00372 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.1851 2.4450 0.7780 5 6 2.7418 1.9436 -1.2638 6 6 3.5550 1.6562 -0.0006 7 1 3.9429 2.5109 0.5536 8 7 4.4086 0.4607 -0.0006 9 6 5.7262 0.7546 0.5788 10 6 6.5717 -0.4927 0.5624 11 1 6.1705 -1.4118 0.1613 12 6 7.8577 -0.4604 1.0585 13 7 8.3464 0.6588 1.5464 14 14 8.9055 -2.0067 1.0388 15 1 8.1289 -3.1233 0.4429 16 1 10.1271 -1.7666 0.2293 17 1 9.2938 -2.3593 2.4282 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 1.8933 -0.5138 -0.8899 22 1 1.8933 -0.5138 0.8900 23 1 1.3351 3.4444 0.3695 24 1 0.1338 2.1707 0.6907 25 1 1.4776 2.4339 1.8280 26 1 2.5946 2.9875 -1.5409 27 1 2.8406 1.2455 -2.0950 28 1 3.9620 -0.3025 0.4855 29 1 6.2151 1.5331 -0.0069 30 1 5.6032 1.0963 1.6065 31 1 9.2510 0.6816 1.8958 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307700099.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:39 Heat of formation + Delta-G solvation = -12.928334 kcal Electronic energy + Delta-G solvation = -11038.063555 eV Core-core repulsion = 9125.691163 eV Total energy + Delta-G solvation = -1912.372391 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.84756 -35.98558 -34.09127 -32.42095 -29.18881 -27.89069 -24.79757 -23.88607 -22.08315 -19.58728 -18.46176 -16.80225 -16.70034 -15.85726 -15.49583 -14.93654 -14.42170 -14.13257 -13.97969 -13.49843 -13.01942 -12.78307 -12.68689 -12.61855 -12.48247 -12.13063 -11.98292 -11.65003 -11.43282 -11.13645 -10.67044 -10.41746 -8.97408 -8.25558 -6.37802 1.39693 1.40862 1.54999 2.38071 2.87103 3.07631 3.39053 3.82331 3.96526 4.18919 4.35766 4.50156 4.58970 4.76365 4.81463 4.95671 4.97637 5.01337 5.10535 5.18882 5.21916 5.26043 5.31986 5.38719 5.59382 5.62139 5.99519 6.42940 6.69495 6.85176 7.33592 8.86550 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.065938 B = 0.008265 C = 0.007761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.537863 B = 3386.845822 C = 3606.710407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 C -0.123 4.123 4 C -0.117 4.117 5 C -0.157 4.157 6 C -0.006 4.006 7 H 0.073 0.927 8 N -0.656 5.656 9 C 0.212 3.788 10 C -0.538 4.538 11 H 0.065 0.935 12 C 0.000 4.000 13 N -0.935 5.935 14 Si 0.977 3.023 15 H -0.262 1.262 16 H -0.277 1.277 17 H -0.275 1.275 18 H 0.066 0.934 19 H 0.061 0.939 20 H 0.061 0.939 21 H 0.058 0.942 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.088 0.912 25 H 0.051 0.949 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.334 0.666 29 H -0.003 1.003 30 H -0.040 1.040 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.067 0.190 -2.104 14.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 C -0.124 4.124 4 C -0.174 4.174 5 C -0.195 4.195 6 C -0.117 4.117 7 H 0.091 0.909 8 N -0.287 5.287 9 C 0.084 3.916 10 C -0.577 4.577 11 H 0.083 0.917 12 C -0.198 4.198 13 N -0.575 5.575 14 Si 0.801 3.199 15 H -0.186 1.186 16 H -0.202 1.202 17 H -0.201 1.201 18 H 0.085 0.915 19 H 0.080 0.920 20 H 0.080 0.920 21 H 0.077 0.923 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.107 0.893 25 H 0.070 0.930 26 H 0.122 0.878 27 H 0.107 0.893 28 H 0.153 0.847 29 H 0.016 0.984 30 H -0.022 1.022 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.692 0.344 -2.670 13.954 hybrid contribution 0.922 -0.250 1.019 1.397 sum -12.770 0.094 -1.650 12.876 Atomic orbital electron populations 1.21774 0.93484 1.02126 1.02450 1.20964 0.97319 0.92815 1.01386 1.22013 0.92003 0.97683 1.00719 1.21492 1.00121 0.97049 0.98740 1.23385 1.02617 1.01809 0.91684 1.22607 0.91259 0.94872 1.02982 0.90878 1.60312 1.03288 1.06351 1.58721 1.19217 0.86184 0.95931 0.90271 1.21570 0.98986 0.96829 1.40268 0.91716 1.26002 0.99217 1.00125 0.94431 1.70102 1.17071 1.28412 1.41903 0.85223 0.78069 0.78616 0.78009 1.18596 1.20235 1.20063 0.91504 0.92030 0.92037 0.92344 0.92836 0.92086 0.89335 0.93008 0.87786 0.89275 0.84652 0.98439 1.02223 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 8.92 71.98 0.64 -2.12 16 2 C -0.09 -2.32 5.06 30.60 0.15 -2.17 16 3 C -0.12 -3.55 2.47 -52.18 -0.13 -3.68 16 4 C -0.12 -2.70 9.49 71.98 0.68 -2.02 16 5 C -0.16 -4.89 9.75 30.58 0.30 -4.59 16 6 C -0.01 -0.24 5.96 44.90 0.27 0.03 16 7 H 0.07 3.02 7.90 -2.38 -0.02 3.00 16 8 N -0.66 -30.27 6.55 -495.66 -3.25 -33.52 16 9 C 0.21 11.98 5.29 85.56 0.45 12.43 16 10 C -0.54 -31.82 9.32 25.60 0.24 -31.59 16 11 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 12 C 0.00 0.02 5.46 84.65 0.46 0.49 16 13 N -0.93 -57.80 13.29 21.45 0.28 -57.51 16 14 Si 0.98 45.04 29.54 68.60 2.03 47.07 16 15 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 16 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 17 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 18 H 0.07 1.17 6.45 -2.39 -0.02 1.15 16 19 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 20 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 21 H 0.06 1.68 7.90 -2.39 -0.02 1.66 16 22 H 0.05 1.52 7.59 -2.39 -0.02 1.50 16 23 H 0.06 1.32 7.90 -2.39 -0.02 1.30 16 24 H 0.09 1.63 5.59 -2.39 -0.01 1.62 16 25 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 26 H 0.10 2.80 8.05 -2.39 -0.02 2.79 16 27 H 0.09 2.87 8.05 -2.39 -0.02 2.85 16 28 H 0.33 14.65 7.19 -89.69 -0.64 14.01 16 29 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 30 H -0.04 -2.41 8.14 -2.39 -0.02 -2.43 16 31 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -64.96 255.84 2.58 -62.38 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.44 Total: 14.79 kcal Atomic # 6 Polarization: -36.28 SS G_CDS: 3.07 Total: -33.21 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -2.96 Total: -91.03 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -64.96 2.58 -62.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307700099.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.456 kcal (2) G-P(sol) polarization free energy of solvation -64.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds