Wall clock time and date at job start Mon Mar 30 2020 01:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46910 * 2 1 4 4 C 1.52991 * 109.47064 * 119.99978 * 2 1 3 5 5 C 1.53003 * 109.47601 * 64.99902 * 4 2 1 6 6 H 1.09009 * 115.55533 * 330.68810 * 5 4 2 7 7 C 1.53069 * 117.51426 * 116.38820 * 5 4 2 8 8 C 1.52998 * 117.50177 * 184.99902 * 5 4 2 9 9 H 1.09002 * 117.49506 * 144.99900 * 8 5 4 10 10 N 1.46496 * 117.49663 * 0.02562 * 8 5 4 11 11 C 1.36945 * 119.99718 * 155.08750 * 10 8 5 12 12 H 1.07997 * 119.99756 * 359.97438 * 11 10 8 13 13 C 1.38805 * 119.99878 * 179.97438 * 11 10 8 14 14 N 1.31624 * 120.00257 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99929 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47187 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47141 * 300.00154 * 15 13 11 18 18 H 1.48498 * 109.47018 * 60.00200 * 15 13 11 19 19 H 1.09004 * 109.47256 * 59.99652 * 1 2 3 20 20 H 1.08996 * 109.47385 * 179.97438 * 1 2 3 21 21 H 1.09006 * 109.46902 * 300.00502 * 1 2 3 22 22 H 1.09003 * 109.46723 * 240.00235 * 2 1 3 23 23 H 1.09004 * 109.46676 * 180.02562 * 3 2 1 24 24 H 1.09005 * 109.46946 * 299.99656 * 3 2 1 25 25 H 1.08993 * 109.47530 * 60.00076 * 3 2 1 26 26 H 1.09004 * 109.47152 * 304.99475 * 4 2 1 27 27 H 1.09003 * 109.47259 * 184.99820 * 4 2 1 28 28 H 1.08993 * 117.51527 * 0.02562 * 7 5 4 29 29 H 1.09004 * 117.51128 * 214.95894 * 7 5 4 30 30 H 0.96996 * 120.00499 * 335.08480 * 10 8 5 31 31 H 0.97001 * 119.99885 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6352 -2.1955 1.1880 6 1 0.7161 -2.4085 0.6421 7 6 2.7571 -3.2343 1.1157 8 6 1.9518 -3.0661 2.4057 9 1 1.2407 -3.8517 2.6611 10 7 2.6187 -2.4242 3.5411 11 6 2.4815 -2.9458 4.7999 12 1 1.8814 -3.8301 4.9555 13 6 3.1138 -2.3380 5.8757 14 7 3.8448 -1.2599 5.6861 15 14 2.9262 -3.0491 7.5929 16 1 3.6946 -2.2222 8.5578 17 1 1.4910 -3.0501 7.9741 18 1 3.4444 -4.4406 7.6117 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9563 -0.8901 25 1 1.6767 1.9564 0.8899 26 1 1.6054 -0.2616 2.1369 27 1 3.1263 -0.6443 1.2951 28 1 3.7835 -2.8676 1.1121 29 1 2.5758 -4.1307 0.5225 30 1 3.1574 -1.6298 3.4014 31 1 4.2864 -0.8349 6.4380 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307719250.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:58 Heat of formation + Delta-G solvation = 9.745017 kcal Electronic energy + Delta-G solvation = -11105.822645 eV Core-core repulsion = 9194.433444 eV Total energy + Delta-G solvation = -1911.389201 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.78518 -35.07253 -32.94950 -29.68665 -26.99372 -26.69751 -23.80430 -20.98489 -20.09406 -18.90310 -17.29621 -15.24380 -14.64117 -14.40663 -13.76876 -13.35919 -12.98357 -12.51821 -12.04309 -11.81339 -11.47196 -11.22646 -11.05829 -10.90149 -10.68431 -10.47263 -10.21041 -10.13166 -10.04469 -9.75285 -9.00058 -8.66031 -6.85229 -5.82103 -3.09477 3.42466 3.46639 3.47982 4.54831 4.77556 5.13185 5.24631 5.28738 5.54222 5.58482 5.77366 5.83207 5.91911 5.97823 6.03409 6.09984 6.20586 6.24412 6.41360 6.42690 6.54138 6.55841 6.70487 6.85146 6.96662 7.07129 7.67340 8.36882 9.47401 10.05061 10.39577 11.39990 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.052841 B = 0.009280 C = 0.008591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.760691 B = 3016.414894 C = 3258.467243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.074 4.074 5 C -0.194 4.194 6 H 0.092 0.908 7 C -0.232 4.232 8 C 0.148 3.852 9 H 0.098 0.902 10 N -0.686 5.686 11 C -0.248 4.248 12 H 0.074 0.926 13 C -0.011 4.011 14 N -0.931 5.931 15 Si 0.912 3.088 16 H -0.290 1.290 17 H -0.285 1.285 18 H -0.285 1.285 19 H 0.044 0.956 20 H 0.056 0.944 21 H 0.053 0.947 22 H 0.063 0.937 23 H 0.052 0.948 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.388 0.612 31 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.562 1.502 -9.706 10.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.112 4.112 5 C -0.216 4.216 6 H 0.110 0.890 7 C -0.274 4.274 8 C 0.034 3.966 9 H 0.116 0.884 10 N -0.321 5.321 11 C -0.379 4.379 12 H 0.092 0.908 13 C -0.208 4.208 14 N -0.578 5.578 15 Si 0.742 3.258 16 H -0.216 1.216 17 H -0.211 1.211 18 H -0.211 1.211 19 H 0.064 0.936 20 H 0.075 0.925 21 H 0.072 0.928 22 H 0.082 0.918 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.223 0.777 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.571 1.440 -9.447 10.593 hybrid contribution 0.200 -0.087 0.740 0.772 sum -4.371 1.352 -8.707 9.836 Atomic orbital electron populations 1.21863 0.95769 1.01646 1.00942 1.21085 0.95533 0.95623 0.98932 1.21844 1.00930 0.96467 1.01179 1.20998 1.00171 0.93168 0.96861 1.22875 0.98875 0.92550 1.07268 0.89033 1.23652 0.96359 1.00086 1.07273 1.20991 0.96516 0.96464 0.82679 0.88382 1.41996 1.56381 1.31576 1.02110 1.19281 1.25786 1.08568 0.84261 0.90849 1.24797 0.99911 0.97778 0.98266 1.69663 1.36052 1.21310 1.30771 0.86198 0.77505 0.78135 0.83935 1.21607 1.21121 1.21122 0.93650 0.92507 0.92780 0.91819 0.92857 0.93405 0.92677 0.91436 0.92411 0.89926 0.90551 0.77718 0.93275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.01 37.16 0.33 -1.56 16 2 C -0.09 -1.33 2.92 -90.62 -0.26 -1.59 16 3 C -0.15 -1.92 9.19 37.16 0.34 -1.58 16 4 C -0.07 -1.31 3.87 -26.73 -0.10 -1.41 16 5 C -0.19 -3.48 5.53 -90.58 -0.50 -3.98 16 6 H 0.09 1.48 6.38 -51.92 -0.33 1.15 16 7 C -0.23 -4.31 10.11 -26.70 -0.27 -4.58 16 8 C 0.15 3.14 6.59 -67.93 -0.45 2.69 16 9 H 0.10 2.00 8.12 -51.93 -0.42 1.58 16 10 N -0.69 -17.81 5.39 -53.43 -0.29 -18.10 16 11 C -0.25 -7.00 9.98 -15.06 -0.15 -7.15 16 12 H 0.07 1.98 7.82 -52.49 -0.41 1.57 16 13 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 14 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16 15 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 16 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 20 H 0.06 0.74 6.41 -51.93 -0.33 0.41 16 21 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.06 1.08 7.79 -51.93 -0.40 0.67 16 28 H 0.08 1.62 8.03 -51.93 -0.42 1.20 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.39 10.59 7.02 -40.82 -0.29 10.31 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 257.05 15.07 3.87 3.87 Total: -1.00 -29.23 257.05 -6.99 -36.22 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -5.12 Total: 7.69 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -1.16 Total: -19.58 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 0.44 Total: -45.58 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.23 -6.99 -36.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307719250.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.962 kcal (2) G-P(sol) polarization free energy of solvation -29.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds