Wall clock time and date at job start Mon Mar 30 2020 01:51:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53001 * 109.46910 * 2 1
4 4 C 1.52991 * 109.47064 * 119.99978 * 2 1 3
5 5 C 1.53003 * 109.47601 * 64.99902 * 4 2 1
6 6 H 1.09009 * 115.55533 * 330.68810 * 5 4 2
7 7 C 1.53069 * 117.51426 * 116.38820 * 5 4 2
8 8 C 1.52998 * 117.50177 * 184.99902 * 5 4 2
9 9 H 1.09002 * 117.49506 * 144.99900 * 8 5 4
10 10 N 1.46496 * 117.49663 * 0.02562 * 8 5 4
11 11 C 1.36945 * 119.99718 * 155.08750 * 10 8 5
12 12 H 1.07997 * 119.99756 * 359.97438 * 11 10 8
13 13 C 1.38805 * 119.99878 * 179.97438 * 11 10 8
14 14 N 1.31624 * 120.00257 * 0.02562 * 13 11 10
15 15 Si 1.86803 * 119.99929 * 179.97438 * 13 11 10
16 16 H 1.48496 * 109.47187 * 179.97438 * 15 13 11
17 17 H 1.48494 * 109.47141 * 300.00154 * 15 13 11
18 18 H 1.48498 * 109.47018 * 60.00200 * 15 13 11
19 19 H 1.09004 * 109.47256 * 59.99652 * 1 2 3
20 20 H 1.08996 * 109.47385 * 179.97438 * 1 2 3
21 21 H 1.09006 * 109.46902 * 300.00502 * 1 2 3
22 22 H 1.09003 * 109.46723 * 240.00235 * 2 1 3
23 23 H 1.09004 * 109.46676 * 180.02562 * 3 2 1
24 24 H 1.09005 * 109.46946 * 299.99656 * 3 2 1
25 25 H 1.08993 * 109.47530 * 60.00076 * 3 2 1
26 26 H 1.09004 * 109.47152 * 304.99475 * 4 2 1
27 27 H 1.09003 * 109.47259 * 184.99820 * 4 2 1
28 28 H 1.08993 * 117.51527 * 0.02562 * 7 5 4
29 29 H 1.09004 * 117.51128 * 214.95894 * 7 5 4
30 30 H 0.96996 * 120.00499 * 335.08480 * 10 8 5
31 31 H 0.97001 * 119.99885 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 1.2492
5 6 1.6352 -2.1955 1.1880
6 1 0.7161 -2.4085 0.6421
7 6 2.7571 -3.2343 1.1157
8 6 1.9518 -3.0661 2.4057
9 1 1.2407 -3.8517 2.6611
10 7 2.6187 -2.4242 3.5411
11 6 2.4815 -2.9458 4.7999
12 1 1.8814 -3.8301 4.9555
13 6 3.1138 -2.3380 5.8757
14 7 3.8448 -1.2599 5.6861
15 14 2.9262 -3.0491 7.5929
16 1 3.6946 -2.2222 8.5578
17 1 1.4910 -3.0501 7.9741
18 1 3.4444 -4.4406 7.6117
19 1 -0.3634 0.5139 -0.8900
20 1 -0.3634 -1.0276 -0.0005
21 1 -0.3633 0.5139 0.8900
22 1 1.8933 -0.5138 -0.8900
23 1 3.1300 1.4425 -0.0005
24 1 1.6766 1.9563 -0.8901
25 1 1.6767 1.9564 0.8899
26 1 1.6054 -0.2616 2.1369
27 1 3.1263 -0.6443 1.2951
28 1 3.7835 -2.8676 1.1121
29 1 2.5758 -4.1307 0.5225
30 1 3.1574 -1.6298 3.4014
31 1 4.2864 -0.8349 6.4380
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000307719250.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:51:58
Heat of formation + Delta-G solvation = 9.745017 kcal
Electronic energy + Delta-G solvation = -11105.822645 eV
Core-core repulsion = 9194.433444 eV
Total energy + Delta-G solvation = -1911.389201 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 183.132 amu
Computer time = 0.14 seconds
Orbital eigenvalues (eV)
-37.78518 -35.07253 -32.94950 -29.68665 -26.99372 -26.69751 -23.80430 -20.98489
-20.09406 -18.90310 -17.29621 -15.24380 -14.64117 -14.40663 -13.76876 -13.35919
-12.98357 -12.51821 -12.04309 -11.81339 -11.47196 -11.22646 -11.05829 -10.90149
-10.68431 -10.47263 -10.21041 -10.13166 -10.04469 -9.75285 -9.00058 -8.66031
-6.85229 -5.82103 -3.09477 3.42466 3.46639 3.47982 4.54831 4.77556
5.13185 5.24631 5.28738 5.54222 5.58482 5.77366 5.83207 5.91911
5.97823 6.03409 6.09984 6.20586 6.24412 6.41360 6.42690 6.54138
6.55841 6.70487 6.85146 6.96662 7.07129 7.67340 8.36882 9.47401
10.05061 10.39577 11.39990
Molecular weight = 183.13amu
Principal moments of inertia in cm(-1)
A = 0.052841 B = 0.009280 C = 0.008591
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 529.760691 B = 3016.414894 C = 3258.467243
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.093 4.093
3 C -0.147 4.147
4 C -0.074 4.074
5 C -0.194 4.194
6 H 0.092 0.908
7 C -0.232 4.232
8 C 0.148 3.852
9 H 0.098 0.902
10 N -0.686 5.686
11 C -0.248 4.248
12 H 0.074 0.926
13 C -0.011 4.011
14 N -0.931 5.931
15 Si 0.912 3.088
16 H -0.290 1.290
17 H -0.285 1.285
18 H -0.285 1.285
19 H 0.044 0.956
20 H 0.056 0.944
21 H 0.053 0.947
22 H 0.063 0.937
23 H 0.052 0.948
24 H 0.047 0.953
25 H 0.054 0.946
26 H 0.067 0.933
27 H 0.057 0.943
28 H 0.082 0.918
29 H 0.076 0.924
30 H 0.388 0.612
31 H 0.257 0.743
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.562 1.502 -9.706 10.829
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.112 4.112
3 C -0.204 4.204
4 C -0.112 4.112
5 C -0.216 4.216
6 H 0.110 0.890
7 C -0.274 4.274
8 C 0.034 3.966
9 H 0.116 0.884
10 N -0.321 5.321
11 C -0.379 4.379
12 H 0.092 0.908
13 C -0.208 4.208
14 N -0.578 5.578
15 Si 0.742 3.258
16 H -0.216 1.216
17 H -0.211 1.211
18 H -0.211 1.211
19 H 0.064 0.936
20 H 0.075 0.925
21 H 0.072 0.928
22 H 0.082 0.918
23 H 0.071 0.929
24 H 0.066 0.934
25 H 0.073 0.927
26 H 0.086 0.914
27 H 0.076 0.924
28 H 0.101 0.899
29 H 0.094 0.906
30 H 0.223 0.777
31 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -4.571 1.440 -9.447 10.593
hybrid contribution 0.200 -0.087 0.740 0.772
sum -4.371 1.352 -8.707 9.836
Atomic orbital electron populations
1.21863 0.95769 1.01646 1.00942 1.21085 0.95533 0.95623 0.98932
1.21844 1.00930 0.96467 1.01179 1.20998 1.00171 0.93168 0.96861
1.22875 0.98875 0.92550 1.07268 0.89033 1.23652 0.96359 1.00086
1.07273 1.20991 0.96516 0.96464 0.82679 0.88382 1.41996 1.56381
1.31576 1.02110 1.19281 1.25786 1.08568 0.84261 0.90849 1.24797
0.99911 0.97778 0.98266 1.69663 1.36052 1.21310 1.30771 0.86198
0.77505 0.78135 0.83935 1.21607 1.21121 1.21122 0.93650 0.92507
0.92780 0.91819 0.92857 0.93405 0.92677 0.91436 0.92411 0.89926
0.90551 0.77718 0.93275
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.89 9.01 37.16 0.33 -1.56 16
2 C -0.09 -1.33 2.92 -90.62 -0.26 -1.59 16
3 C -0.15 -1.92 9.19 37.16 0.34 -1.58 16
4 C -0.07 -1.31 3.87 -26.73 -0.10 -1.41 16
5 C -0.19 -3.48 5.53 -90.58 -0.50 -3.98 16
6 H 0.09 1.48 6.38 -51.92 -0.33 1.15 16
7 C -0.23 -4.31 10.11 -26.70 -0.27 -4.58 16
8 C 0.15 3.14 6.59 -67.93 -0.45 2.69 16
9 H 0.10 2.00 8.12 -51.93 -0.42 1.58 16
10 N -0.69 -17.81 5.39 -53.43 -0.29 -18.10 16
11 C -0.25 -7.00 9.98 -15.06 -0.15 -7.15 16
12 H 0.07 1.98 7.82 -52.49 -0.41 1.57 16
13 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16
14 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16
15 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16
16 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16
18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16
19 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16
20 H 0.06 0.74 6.41 -51.93 -0.33 0.41 16
21 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16
22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16
25 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16
26 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16
27 H 0.06 1.08 7.79 -51.93 -0.40 0.67 16
28 H 0.08 1.62 8.03 -51.93 -0.42 1.20 16
29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16
30 H 0.39 10.59 7.02 -40.82 -0.29 10.31 16
31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16
LS Contribution 257.05 15.07 3.87 3.87
Total: -1.00 -29.23 257.05 -6.99 -36.22
By element:
Atomic # 1 Polarization: 12.81 SS G_CDS: -5.12 Total: 7.69 kcal
Atomic # 6 Polarization: -18.42 SS G_CDS: -1.16 Total: -19.58 kcal
Atomic # 7 Polarization: -46.01 SS G_CDS: 0.44 Total: -45.58 kcal
Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal
Total LS contribution 3.87 Total: 3.87 kcal
Total: -29.23 -6.99 -36.22 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307719250.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.962 kcal
(2) G-P(sol) polarization free energy of solvation -29.226 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.736 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.217 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.745 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.14 seconds