Wall clock time and date at job start Mon Mar 30 2020 01:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46910 * 2 1 4 4 C 1.52991 * 109.47064 * 119.99978 * 2 1 3 5 5 C 1.53003 * 109.47601 * 64.99902 * 4 2 1 6 6 H 1.09009 * 115.55533 * 330.68810 * 5 4 2 7 7 C 1.53069 * 117.51426 * 116.38820 * 5 4 2 8 8 C 1.52998 * 117.50177 * 184.99902 * 5 4 2 9 9 H 1.09002 * 117.49506 * 144.99900 * 8 5 4 10 10 N 1.46496 * 117.49663 * 0.02562 * 8 5 4 11 11 C 1.36945 * 119.99718 * 155.08750 * 10 8 5 12 12 H 1.07997 * 119.99756 * 359.97438 * 11 10 8 13 13 C 1.38805 * 119.99878 * 179.97438 * 11 10 8 14 14 N 1.31624 * 120.00257 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99929 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47187 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47141 * 300.00154 * 15 13 11 18 18 H 1.48498 * 109.47018 * 60.00200 * 15 13 11 19 19 H 1.09004 * 109.47256 * 59.99652 * 1 2 3 20 20 H 1.08996 * 109.47385 * 179.97438 * 1 2 3 21 21 H 1.09006 * 109.46902 * 300.00502 * 1 2 3 22 22 H 1.09003 * 109.46723 * 240.00235 * 2 1 3 23 23 H 1.09004 * 109.46676 * 180.02562 * 3 2 1 24 24 H 1.09005 * 109.46946 * 299.99656 * 3 2 1 25 25 H 1.08993 * 109.47530 * 60.00076 * 3 2 1 26 26 H 1.09004 * 109.47152 * 304.99475 * 4 2 1 27 27 H 1.09003 * 109.47259 * 184.99820 * 4 2 1 28 28 H 1.08993 * 117.51527 * 0.02562 * 7 5 4 29 29 H 1.09004 * 117.51128 * 214.95894 * 7 5 4 30 30 H 0.96996 * 120.00499 * 335.08480 * 10 8 5 31 31 H 0.97001 * 119.99885 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6352 -2.1955 1.1880 6 1 0.7161 -2.4085 0.6421 7 6 2.7571 -3.2343 1.1157 8 6 1.9518 -3.0661 2.4057 9 1 1.2407 -3.8517 2.6611 10 7 2.6187 -2.4242 3.5411 11 6 2.4815 -2.9458 4.7999 12 1 1.8814 -3.8301 4.9555 13 6 3.1138 -2.3380 5.8757 14 7 3.8448 -1.2599 5.6861 15 14 2.9262 -3.0491 7.5929 16 1 3.6946 -2.2222 8.5578 17 1 1.4910 -3.0501 7.9741 18 1 3.4444 -4.4406 7.6117 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6766 1.9563 -0.8901 25 1 1.6767 1.9564 0.8899 26 1 1.6054 -0.2616 2.1369 27 1 3.1263 -0.6443 1.2951 28 1 3.7835 -2.8676 1.1121 29 1 2.5758 -4.1307 0.5225 30 1 3.1574 -1.6298 3.4014 31 1 4.2864 -0.8349 6.4380 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307719250.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:57 Heat of formation + Delta-G solvation = -7.276949 kcal Electronic energy + Delta-G solvation = -11106.560773 eV Core-core repulsion = 9194.433444 eV Total energy + Delta-G solvation = -1912.127329 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.31268 -36.48504 -34.87877 -31.70327 -28.18645 -27.93713 -25.91014 -22.50550 -21.50019 -20.36521 -19.33851 -16.91313 -16.31592 -15.88229 -15.43441 -14.87344 -14.50687 -13.96862 -13.31483 -13.17367 -13.02441 -12.92503 -12.75674 -12.45557 -12.27986 -12.19791 -11.88980 -11.60841 -11.48119 -11.35902 -10.66966 -10.52228 -8.84258 -7.99047 -5.26893 1.46516 1.50174 1.56444 2.53301 3.12029 3.49074 3.74935 3.89967 4.10812 4.14956 4.38617 4.48934 4.51477 4.59830 4.83052 4.89874 4.98895 5.03294 5.04843 5.13639 5.19158 5.28156 5.35016 5.47926 5.49188 5.59471 5.63418 6.23048 7.28123 8.03768 8.27279 9.24089 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.052841 B = 0.009280 C = 0.008591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.760691 B = 3016.414894 C = 3258.467243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.147 4.147 4 C -0.072 4.072 5 C -0.169 4.169 6 H 0.120 0.880 7 C -0.214 4.214 8 C 0.107 3.893 9 H 0.105 0.895 10 N -0.705 5.705 11 C -0.253 4.253 12 H 0.081 0.919 13 C -0.076 4.076 14 N -0.970 5.970 15 Si 0.980 3.020 16 H -0.295 1.295 17 H -0.276 1.276 18 H -0.276 1.276 19 H 0.068 0.932 20 H 0.058 0.942 21 H 0.043 0.957 22 H 0.076 0.924 23 H 0.048 0.952 24 H 0.071 0.929 25 H 0.044 0.956 26 H 0.039 0.961 27 H 0.038 0.962 28 H 0.068 0.932 29 H 0.106 0.894 30 H 0.376 0.624 31 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.644 0.824 -10.992 12.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C -0.204 4.204 4 C -0.110 4.110 5 C -0.190 4.190 6 H 0.137 0.863 7 C -0.254 4.254 8 C -0.004 4.004 9 H 0.123 0.877 10 N -0.340 5.340 11 C -0.384 4.384 12 H 0.099 0.901 13 C -0.268 4.268 14 N -0.619 5.619 15 Si 0.808 3.192 16 H -0.221 1.221 17 H -0.202 1.202 18 H -0.202 1.202 19 H 0.087 0.913 20 H 0.077 0.923 21 H 0.062 0.938 22 H 0.094 0.906 23 H 0.067 0.933 24 H 0.090 0.910 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.087 0.913 29 H 0.124 0.876 30 H 0.208 0.792 31 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.687 0.724 -10.783 12.212 hybrid contribution 0.510 0.103 1.035 1.158 sum -5.177 0.827 -9.748 11.068 Atomic orbital electron populations 1.21848 0.94526 1.02016 1.01630 1.21055 0.96509 0.95882 0.97199 1.21842 1.00711 0.95929 1.01906 1.20959 0.98885 0.93459 0.97678 1.22928 0.99693 0.92290 1.04106 0.86257 1.23606 0.95729 1.01306 1.04785 1.21306 0.98122 0.98253 0.82715 0.87707 1.42095 1.57307 1.31702 1.02885 1.19719 1.24857 1.08399 0.85448 0.90095 1.25664 1.00347 0.98515 1.02247 1.69831 1.37651 1.22987 1.31473 0.85114 0.77636 0.77443 0.78972 1.22069 1.20159 1.20199 0.91311 0.92277 0.93796 0.90595 0.93303 0.90977 0.93636 0.94262 0.94323 0.91300 0.87556 0.79165 0.93850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.01 71.98 0.65 -2.70 16 2 C -0.09 -2.33 2.92 -10.80 -0.03 -2.36 16 3 C -0.15 -3.60 9.19 71.98 0.66 -2.94 16 4 C -0.07 -2.51 3.87 30.59 0.12 -2.39 16 5 C -0.17 -5.77 5.53 -10.77 -0.06 -5.83 16 6 H 0.12 3.45 6.38 -2.38 -0.02 3.43 16 7 C -0.21 -7.54 10.11 30.62 0.31 -7.23 16 8 C 0.11 4.49 6.59 44.99 0.30 4.79 16 9 H 0.11 4.17 8.12 -2.39 -0.02 4.15 16 10 N -0.70 -37.25 5.39 -322.95 -1.74 -38.99 16 11 C -0.25 -14.40 9.98 84.03 0.84 -13.56 16 12 H 0.08 4.36 7.82 -2.91 -0.02 4.34 16 13 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 14 N -0.97 -60.34 13.06 21.65 0.28 -60.06 16 15 Si 0.98 46.49 29.55 68.60 2.03 48.52 16 16 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H 0.07 1.30 8.14 -2.38 -0.02 1.29 16 20 H 0.06 1.34 6.41 -2.39 -0.02 1.33 16 21 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 22 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.05 1.22 8.14 -2.38 -0.02 1.21 16 24 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 25 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.04 1.47 7.79 -2.39 -0.02 1.45 16 28 H 0.07 2.64 8.03 -2.39 -0.02 2.62 16 29 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 30 H 0.38 21.26 7.02 -92.71 -0.65 20.61 16 31 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -62.92 257.05 4.25 -58.66 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.43 Total: 28.02 kcal Atomic # 6 Polarization: -39.41 SS G_CDS: 3.25 Total: -36.16 kcal Atomic # 7 Polarization: -97.59 SS G_CDS: -1.46 Total: -99.05 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -62.92 4.25 -58.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307719250.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.388 kcal (2) G-P(sol) polarization free energy of solvation -62.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds