Wall clock time and date at job start Mon Mar 30 2020 01:51:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53001 * 109.46910 * 2 1
4 4 C 1.52991 * 109.47064 * 119.99978 * 2 1 3
5 5 C 1.53003 * 109.47601 * 64.99902 * 4 2 1
6 6 H 1.09009 * 115.55533 * 330.68810 * 5 4 2
7 7 C 1.53069 * 117.51426 * 116.38820 * 5 4 2
8 8 C 1.52998 * 117.50177 * 184.99902 * 5 4 2
9 9 H 1.09002 * 117.49506 * 144.99900 * 8 5 4
10 10 N 1.46496 * 117.49663 * 0.02562 * 8 5 4
11 11 C 1.36945 * 119.99718 * 155.08750 * 10 8 5
12 12 H 1.07997 * 119.99756 * 359.97438 * 11 10 8
13 13 C 1.38805 * 119.99878 * 179.97438 * 11 10 8
14 14 N 1.31624 * 120.00257 * 0.02562 * 13 11 10
15 15 Si 1.86803 * 119.99929 * 179.97438 * 13 11 10
16 16 H 1.48496 * 109.47187 * 179.97438 * 15 13 11
17 17 H 1.48494 * 109.47141 * 300.00154 * 15 13 11
18 18 H 1.48498 * 109.47018 * 60.00200 * 15 13 11
19 19 H 1.09004 * 109.47256 * 59.99652 * 1 2 3
20 20 H 1.08996 * 109.47385 * 179.97438 * 1 2 3
21 21 H 1.09006 * 109.46902 * 300.00502 * 1 2 3
22 22 H 1.09003 * 109.46723 * 240.00235 * 2 1 3
23 23 H 1.09004 * 109.46676 * 180.02562 * 3 2 1
24 24 H 1.09005 * 109.46946 * 299.99656 * 3 2 1
25 25 H 1.08993 * 109.47530 * 60.00076 * 3 2 1
26 26 H 1.09004 * 109.47152 * 304.99475 * 4 2 1
27 27 H 1.09003 * 109.47259 * 184.99820 * 4 2 1
28 28 H 1.08993 * 117.51527 * 0.02562 * 7 5 4
29 29 H 1.09004 * 117.51128 * 214.95894 * 7 5 4
30 30 H 0.96996 * 120.00499 * 335.08480 * 10 8 5
31 31 H 0.97001 * 119.99885 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 1.2492
5 6 1.6352 -2.1955 1.1880
6 1 0.7161 -2.4085 0.6421
7 6 2.7571 -3.2343 1.1157
8 6 1.9518 -3.0661 2.4057
9 1 1.2407 -3.8517 2.6611
10 7 2.6187 -2.4242 3.5411
11 6 2.4815 -2.9458 4.7999
12 1 1.8814 -3.8301 4.9555
13 6 3.1138 -2.3380 5.8757
14 7 3.8448 -1.2599 5.6861
15 14 2.9262 -3.0491 7.5929
16 1 3.6946 -2.2222 8.5578
17 1 1.4910 -3.0501 7.9741
18 1 3.4444 -4.4406 7.6117
19 1 -0.3634 0.5139 -0.8900
20 1 -0.3634 -1.0276 -0.0005
21 1 -0.3633 0.5139 0.8900
22 1 1.8933 -0.5138 -0.8900
23 1 3.1300 1.4425 -0.0005
24 1 1.6766 1.9563 -0.8901
25 1 1.6767 1.9564 0.8899
26 1 1.6054 -0.2616 2.1369
27 1 3.1263 -0.6443 1.2951
28 1 3.7835 -2.8676 1.1121
29 1 2.5758 -4.1307 0.5225
30 1 3.1574 -1.6298 3.4014
31 1 4.2864 -0.8349 6.4380
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000307719250.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:51:57
Heat of formation + Delta-G solvation = -7.276949 kcal
Electronic energy + Delta-G solvation = -11106.560773 eV
Core-core repulsion = 9194.433444 eV
Total energy + Delta-G solvation = -1912.127329 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 183.132 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-39.31268 -36.48504 -34.87877 -31.70327 -28.18645 -27.93713 -25.91014 -22.50550
-21.50019 -20.36521 -19.33851 -16.91313 -16.31592 -15.88229 -15.43441 -14.87344
-14.50687 -13.96862 -13.31483 -13.17367 -13.02441 -12.92503 -12.75674 -12.45557
-12.27986 -12.19791 -11.88980 -11.60841 -11.48119 -11.35902 -10.66966 -10.52228
-8.84258 -7.99047 -5.26893 1.46516 1.50174 1.56444 2.53301 3.12029
3.49074 3.74935 3.89967 4.10812 4.14956 4.38617 4.48934 4.51477
4.59830 4.83052 4.89874 4.98895 5.03294 5.04843 5.13639 5.19158
5.28156 5.35016 5.47926 5.49188 5.59471 5.63418 6.23048 7.28123
8.03768 8.27279 9.24089
Molecular weight = 183.13amu
Principal moments of inertia in cm(-1)
A = 0.052841 B = 0.009280 C = 0.008591
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 529.760691 B = 3016.414894 C = 3258.467243
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.088 4.088
3 C -0.147 4.147
4 C -0.072 4.072
5 C -0.169 4.169
6 H 0.120 0.880
7 C -0.214 4.214
8 C 0.107 3.893
9 H 0.105 0.895
10 N -0.705 5.705
11 C -0.253 4.253
12 H 0.081 0.919
13 C -0.076 4.076
14 N -0.970 5.970
15 Si 0.980 3.020
16 H -0.295 1.295
17 H -0.276 1.276
18 H -0.276 1.276
19 H 0.068 0.932
20 H 0.058 0.942
21 H 0.043 0.957
22 H 0.076 0.924
23 H 0.048 0.952
24 H 0.071 0.929
25 H 0.044 0.956
26 H 0.039 0.961
27 H 0.038 0.962
28 H 0.068 0.932
29 H 0.106 0.894
30 H 0.376 0.624
31 H 0.253 0.747
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.644 0.824 -10.992 12.383
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.106 4.106
3 C -0.204 4.204
4 C -0.110 4.110
5 C -0.190 4.190
6 H 0.137 0.863
7 C -0.254 4.254
8 C -0.004 4.004
9 H 0.123 0.877
10 N -0.340 5.340
11 C -0.384 4.384
12 H 0.099 0.901
13 C -0.268 4.268
14 N -0.619 5.619
15 Si 0.808 3.192
16 H -0.221 1.221
17 H -0.202 1.202
18 H -0.202 1.202
19 H 0.087 0.913
20 H 0.077 0.923
21 H 0.062 0.938
22 H 0.094 0.906
23 H 0.067 0.933
24 H 0.090 0.910
25 H 0.064 0.936
26 H 0.057 0.943
27 H 0.057 0.943
28 H 0.087 0.913
29 H 0.124 0.876
30 H 0.208 0.792
31 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges -5.687 0.724 -10.783 12.212
hybrid contribution 0.510 0.103 1.035 1.158
sum -5.177 0.827 -9.748 11.068
Atomic orbital electron populations
1.21848 0.94526 1.02016 1.01630 1.21055 0.96509 0.95882 0.97199
1.21842 1.00711 0.95929 1.01906 1.20959 0.98885 0.93459 0.97678
1.22928 0.99693 0.92290 1.04106 0.86257 1.23606 0.95729 1.01306
1.04785 1.21306 0.98122 0.98253 0.82715 0.87707 1.42095 1.57307
1.31702 1.02885 1.19719 1.24857 1.08399 0.85448 0.90095 1.25664
1.00347 0.98515 1.02247 1.69831 1.37651 1.22987 1.31473 0.85114
0.77636 0.77443 0.78972 1.22069 1.20159 1.20199 0.91311 0.92277
0.93796 0.90595 0.93303 0.90977 0.93636 0.94262 0.94323 0.91300
0.87556 0.79165 0.93850
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.35 9.01 71.98 0.65 -2.70 16
2 C -0.09 -2.33 2.92 -10.80 -0.03 -2.36 16
3 C -0.15 -3.60 9.19 71.98 0.66 -2.94 16
4 C -0.07 -2.51 3.87 30.59 0.12 -2.39 16
5 C -0.17 -5.77 5.53 -10.77 -0.06 -5.83 16
6 H 0.12 3.45 6.38 -2.38 -0.02 3.43 16
7 C -0.21 -7.54 10.11 30.62 0.31 -7.23 16
8 C 0.11 4.49 6.59 44.99 0.30 4.79 16
9 H 0.11 4.17 8.12 -2.39 -0.02 4.15 16
10 N -0.70 -37.25 5.39 -322.95 -1.74 -38.99 16
11 C -0.25 -14.40 9.98 84.03 0.84 -13.56 16
12 H 0.08 4.36 7.82 -2.91 -0.02 4.34 16
13 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16
14 N -0.97 -60.34 13.06 21.65 0.28 -60.06 16
15 Si 0.98 46.49 29.55 68.60 2.03 48.52 16
16 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16
17 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16
18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16
19 H 0.07 1.30 8.14 -2.38 -0.02 1.29 16
20 H 0.06 1.34 6.41 -2.39 -0.02 1.33 16
21 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16
22 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16
23 H 0.05 1.22 8.14 -2.38 -0.02 1.21 16
24 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16
25 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16
26 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16
27 H 0.04 1.47 7.79 -2.39 -0.02 1.45 16
28 H 0.07 2.64 8.03 -2.39 -0.02 2.62 16
29 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16
30 H 0.38 21.26 7.02 -92.71 -0.65 20.61 16
31 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16
Total: -1.00 -62.92 257.05 4.25 -58.66
By element:
Atomic # 1 Polarization: 27.59 SS G_CDS: 0.43 Total: 28.02 kcal
Atomic # 6 Polarization: -39.41 SS G_CDS: 3.25 Total: -36.16 kcal
Atomic # 7 Polarization: -97.59 SS G_CDS: -1.46 Total: -99.05 kcal
Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal
Total: -62.92 4.25 -58.66 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307719250.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.388 kcal
(2) G-P(sol) polarization free energy of solvation -62.916 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.528 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.665 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.277 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds