Wall clock time and date at job start Mon Mar 30 2020 02:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46887 * 2 1 4 4 N 1.46900 * 109.47345 * 120.00537 * 2 1 3 5 5 C 1.46897 * 110.99830 * 275.00296 * 4 2 1 6 6 C 1.50702 * 109.46968 * 179.97438 * 5 4 2 7 7 H 1.07991 * 120.00086 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99669 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00432 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99926 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46812 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47412 * 119.99960 * 10 8 6 13 13 H 1.48498 * 109.47001 * 240.00545 * 10 8 6 14 14 C 1.53005 * 109.47011 * 240.00543 * 2 1 3 15 15 H 1.09002 * 115.55067 * 274.41563 * 14 2 1 16 16 C 1.52999 * 117.51737 * 128.71598 * 14 2 1 17 17 C 1.53005 * 117.49765 * 60.08577 * 14 2 1 18 18 H 1.08995 * 117.49694 * 359.97438 * 17 14 2 19 19 C 1.53002 * 117.49665 * 215.00110 * 17 14 2 20 20 H 1.08992 * 109.47370 * 299.99136 * 1 2 3 21 21 H 1.08999 * 109.47420 * 59.99622 * 1 2 3 22 22 H 1.09002 * 109.46990 * 179.97438 * 1 2 3 23 23 H 1.00898 * 110.99771 * 151.04814 * 4 2 1 24 24 H 1.08999 * 109.46910 * 299.99831 * 5 4 2 25 25 H 1.08997 * 109.47433 * 59.99828 * 5 4 2 26 26 H 0.97003 * 119.99865 * 179.97438 * 9 8 6 27 27 H 1.09003 * 117.50034 * 0.02562 * 16 14 2 28 28 H 1.08995 * 117.49797 * 145.02727 * 16 14 2 29 29 H 1.08998 * 109.47083 * 60.00137 * 19 17 14 30 30 H 1.08994 * 109.46707 * 180.02562 * 19 17 14 31 31 H 1.09006 * 109.47074 * 300.00035 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0824 0.2224 2.3469 6 6 2.5873 -0.5221 3.5559 7 1 2.8370 -1.5700 3.4794 8 6 2.7314 0.1348 4.7595 9 7 2.4278 1.4111 4.8526 10 14 3.3580 -0.7878 6.2581 11 1 3.6267 -2.2017 5.8921 12 1 4.6117 -0.1550 6.7405 13 1 2.3340 -0.7401 7.3325 14 6 2.0399 -0.7212 -1.2494 15 1 2.1253 -1.8045 -1.1649 16 6 3.0757 0.0040 -2.1108 17 6 1.6373 -0.1481 -2.6097 18 1 1.0087 0.7424 -2.6145 19 6 1.3852 -1.1396 -3.7473 20 1 -0.3634 0.5137 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 2.9173 -1.1205 1.0285 24 1 2.7588 1.0460 2.1182 25 1 1.0870 0.6160 2.5525 26 1 2.5288 1.8731 5.6995 27 1 3.3944 0.9950 -1.7874 28 1 3.8424 -0.6022 -2.5931 29 1 0.5763 -1.8147 -3.4683 30 1 1.1091 -0.5944 -4.6498 31 1 2.2913 -1.7160 -3.9344 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307740126.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:30 Heat of formation + Delta-G solvation = 5.498481 kcal Electronic energy + Delta-G solvation = -10977.174687 eV Core-core repulsion = 9065.601342 eV Total energy + Delta-G solvation = -1911.573345 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.32815 -34.93199 -32.50255 -29.63626 -28.18571 -26.09252 -23.16177 -21.29819 -20.45954 -19.53089 -16.52053 -15.30415 -14.82142 -14.31594 -13.75008 -13.24935 -13.09537 -12.78786 -12.26430 -11.90523 -11.58690 -11.42960 -11.37034 -11.07855 -10.82563 -10.60634 -10.17965 -10.02626 -9.66033 -9.50068 -9.05954 -8.45653 -7.23148 -6.00517 -4.02116 3.32799 3.39770 3.45226 3.94357 4.45134 4.75581 5.04154 5.08971 5.35259 5.37278 5.43480 5.71886 5.79018 5.84691 5.92932 6.00445 6.05125 6.14250 6.30913 6.37163 6.56189 6.63422 6.84491 7.33306 7.47104 7.83627 8.18011 8.47785 8.67994 9.08068 9.62768 11.10752 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.082279 B = 0.007629 C = 0.007458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.222604 B = 3669.482708 C = 3753.664099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.111 3.889 3 H 0.033 0.967 4 N -0.684 5.684 5 C 0.194 3.806 6 C -0.512 4.512 7 H 0.063 0.937 8 C 0.054 3.946 9 N -0.899 5.899 10 Si 0.899 3.101 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C -0.141 4.141 15 H 0.107 0.893 16 C -0.181 4.181 17 C -0.155 4.155 18 H 0.101 0.899 19 C -0.119 4.119 20 H 0.055 0.945 21 H 0.043 0.957 22 H 0.056 0.944 23 H 0.329 0.671 24 H -0.015 1.015 25 H 0.028 0.972 26 H 0.260 0.740 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.999 -2.766 -12.779 13.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.001 3.999 3 H 0.050 0.950 4 N -0.315 5.315 5 C 0.067 3.933 6 C -0.551 4.551 7 H 0.081 0.919 8 C -0.147 4.147 9 N -0.539 5.539 10 Si 0.727 3.273 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.159 4.159 15 H 0.125 0.875 16 C -0.218 4.218 17 C -0.173 4.173 18 H 0.119 0.881 19 C -0.176 4.176 20 H 0.074 0.926 21 H 0.062 0.938 22 H 0.075 0.925 23 H 0.146 0.854 24 H 0.003 0.997 25 H 0.046 0.954 26 H 0.070 0.930 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.630 -2.863 -12.468 12.896 hybrid contribution 1.130 0.253 0.704 1.355 sum -0.500 -2.610 -11.764 12.061 Atomic orbital electron populations 1.21703 0.95257 1.01667 1.00327 1.21033 0.95406 0.94868 0.88588 0.94954 1.60742 1.32394 1.34694 1.03655 1.19593 0.96423 0.90226 0.87054 1.21246 1.43012 0.96761 0.94056 0.91927 1.24998 0.95730 0.94901 0.99036 1.69978 1.49082 1.09043 1.25763 0.86430 0.78339 0.79968 0.82604 1.19657 1.21123 1.21001 1.22641 1.02450 0.99589 0.91263 0.87496 1.23186 0.92027 1.02082 1.04516 1.22312 0.98189 1.01387 0.95457 0.88096 1.21332 1.01497 0.98096 0.96701 0.92630 0.93785 0.92522 0.85402 0.99748 0.95380 0.93010 0.89117 0.89181 0.92273 0.92592 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 9.26 37.15 0.34 -1.94 16 2 C 0.11 2.07 2.84 -67.71 -0.19 1.88 16 3 H 0.03 0.65 7.56 -51.93 -0.39 0.25 16 4 N -0.68 -15.22 6.30 -107.99 -0.68 -15.90 16 5 C 0.19 5.23 5.24 -4.98 -0.03 5.21 16 6 C -0.51 -14.86 9.32 -34.44 -0.32 -15.18 16 7 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 8 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 10 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 C -0.14 -2.13 4.83 -90.61 -0.44 -2.57 16 15 H 0.11 1.63 8.14 -51.93 -0.42 1.20 16 16 C -0.18 -2.43 9.82 -26.73 -0.26 -2.69 16 17 C -0.15 -1.96 5.61 -90.61 -0.51 -2.47 16 18 H 0.10 1.28 7.61 -51.93 -0.40 0.88 16 19 C -0.12 -1.25 10.19 37.16 0.38 -0.87 16 20 H 0.05 1.06 7.45 -51.93 -0.39 0.67 16 21 H 0.04 0.65 7.29 -51.93 -0.38 0.27 16 22 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 23 H 0.33 7.04 8.35 -39.29 -0.33 6.72 16 24 H -0.02 -0.44 8.06 -51.93 -0.42 -0.86 16 25 H 0.03 0.81 7.44 -51.93 -0.39 0.43 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.09 1.26 8.05 -51.93 -0.42 0.84 16 28 H 0.09 1.08 8.05 -51.93 -0.42 0.67 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.54 7.90 -51.93 -0.41 0.13 16 LS Contribution 259.45 15.07 3.91 3.91 Total: -1.00 -30.03 259.45 -7.35 -37.37 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.17 Total: 1.40 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -1.12 Total: -17.16 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.06 Total: -42.52 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.03 -7.35 -37.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307740126.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.872 kcal (2) G-P(sol) polarization free energy of solvation -30.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds