Wall clock time and date at job start Mon Mar 30 2020 02:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46887 * 2 1 4 4 N 1.46900 * 109.47345 * 120.00537 * 2 1 3 5 5 C 1.46897 * 110.99830 * 275.00296 * 4 2 1 6 6 C 1.50702 * 109.46968 * 179.97438 * 5 4 2 7 7 H 1.07991 * 120.00086 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99669 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00432 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99926 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46812 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47412 * 119.99960 * 10 8 6 13 13 H 1.48498 * 109.47001 * 240.00545 * 10 8 6 14 14 C 1.53005 * 109.47011 * 240.00543 * 2 1 3 15 15 H 1.09002 * 115.55067 * 274.41563 * 14 2 1 16 16 C 1.52999 * 117.51737 * 128.71598 * 14 2 1 17 17 C 1.53005 * 117.49765 * 60.08577 * 14 2 1 18 18 H 1.08995 * 117.49694 * 359.97438 * 17 14 2 19 19 C 1.53002 * 117.49665 * 215.00110 * 17 14 2 20 20 H 1.08992 * 109.47370 * 299.99136 * 1 2 3 21 21 H 1.08999 * 109.47420 * 59.99622 * 1 2 3 22 22 H 1.09002 * 109.46990 * 179.97438 * 1 2 3 23 23 H 1.00898 * 110.99771 * 151.04814 * 4 2 1 24 24 H 1.08999 * 109.46910 * 299.99831 * 5 4 2 25 25 H 1.08997 * 109.47433 * 59.99828 * 5 4 2 26 26 H 0.97003 * 119.99865 * 179.97438 * 9 8 6 27 27 H 1.09003 * 117.50034 * 0.02562 * 16 14 2 28 28 H 1.08995 * 117.49797 * 145.02727 * 16 14 2 29 29 H 1.08998 * 109.47083 * 60.00137 * 19 17 14 30 30 H 1.08994 * 109.46707 * 180.02562 * 19 17 14 31 31 H 1.09006 * 109.47074 * 300.00035 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0824 0.2224 2.3469 6 6 2.5873 -0.5221 3.5559 7 1 2.8370 -1.5700 3.4794 8 6 2.7314 0.1348 4.7595 9 7 2.4278 1.4111 4.8526 10 14 3.3580 -0.7878 6.2581 11 1 3.6267 -2.2017 5.8921 12 1 4.6117 -0.1550 6.7405 13 1 2.3340 -0.7401 7.3325 14 6 2.0399 -0.7212 -1.2494 15 1 2.1253 -1.8045 -1.1649 16 6 3.0757 0.0040 -2.1108 17 6 1.6373 -0.1481 -2.6097 18 1 1.0087 0.7424 -2.6145 19 6 1.3852 -1.1396 -3.7473 20 1 -0.3634 0.5137 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 2.9173 -1.1205 1.0285 24 1 2.7588 1.0460 2.1182 25 1 1.0870 0.6160 2.5525 26 1 2.5288 1.8731 5.6995 27 1 3.3944 0.9950 -1.7874 28 1 3.8424 -0.6022 -2.5931 29 1 0.5763 -1.8147 -3.4683 30 1 1.1091 -0.5944 -4.6498 31 1 2.2913 -1.7160 -3.9344 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307740126.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:30 Heat of formation + Delta-G solvation = -13.841892 kcal Electronic energy + Delta-G solvation = -10978.013348 eV Core-core repulsion = 9065.601342 eV Total energy + Delta-G solvation = -1912.412006 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.59529 -36.64220 -34.58227 -31.33728 -29.18173 -28.11152 -24.86083 -22.97039 -21.71577 -20.85367 -18.61173 -16.95615 -16.66827 -15.82700 -15.22214 -14.73782 -14.55441 -14.09079 -13.85193 -13.53866 -13.06486 -12.96290 -12.85696 -12.66761 -12.44519 -12.20057 -12.01187 -11.61750 -11.31812 -10.85668 -10.67559 -10.59286 -9.13059 -8.23959 -6.35635 1.40490 1.41497 1.55708 2.39299 2.84045 3.09211 3.43540 3.82449 3.96166 4.10511 4.38800 4.42389 4.50520 4.67958 4.85298 4.90598 4.96616 5.00745 5.04822 5.13783 5.21871 5.25024 5.30357 5.39429 5.49314 5.63338 6.02786 6.47306 6.73448 6.89309 7.35755 8.88158 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.082279 B = 0.007629 C = 0.007458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.222604 B = 3669.482708 C = 3753.664099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.109 3.891 3 H 0.014 0.986 4 N -0.682 5.682 5 C 0.210 3.790 6 C -0.536 4.536 7 H 0.065 0.935 8 C -0.001 4.001 9 N -0.936 5.936 10 Si 0.977 3.023 11 H -0.262 1.262 12 H -0.276 1.276 13 H -0.277 1.277 14 C -0.157 4.157 15 H 0.110 0.890 16 C -0.179 4.179 17 C -0.135 4.135 18 H 0.102 0.898 19 C -0.117 4.117 20 H 0.028 0.972 21 H 0.073 0.927 22 H 0.060 0.940 23 H 0.334 0.666 24 H -0.044 1.044 25 H -0.001 1.001 26 H 0.265 0.735 27 H 0.081 0.919 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.711 -3.976 -13.621 14.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.001 4.001 3 H 0.032 0.968 4 N -0.313 5.313 5 C 0.083 3.917 6 C -0.574 4.574 7 H 0.083 0.917 8 C -0.199 4.199 9 N -0.576 5.576 10 Si 0.801 3.199 11 H -0.186 1.186 12 H -0.202 1.202 13 H -0.203 1.203 14 C -0.175 4.175 15 H 0.128 0.872 16 C -0.216 4.216 17 C -0.154 4.154 18 H 0.121 0.879 19 C -0.174 4.174 20 H 0.047 0.953 21 H 0.092 0.908 22 H 0.079 0.921 23 H 0.151 0.849 24 H -0.027 1.027 25 H 0.018 0.982 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.126 0.874 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.345 -4.081 -13.338 14.013 hybrid contribution 1.016 0.673 0.906 1.519 sum -0.329 -3.408 -12.431 12.894 Atomic orbital electron populations 1.21663 0.94322 1.01941 1.00466 1.21112 0.96147 0.94032 0.88815 0.96826 1.60646 1.32634 1.33887 1.04089 1.19215 0.93794 0.89979 0.88760 1.21592 1.43623 0.97051 0.95151 0.91700 1.26004 0.95557 0.95791 1.02519 1.70108 1.49776 1.10800 1.26944 0.85229 0.77876 0.78827 0.78014 1.18584 1.20194 1.20279 1.22425 1.04930 0.99342 0.90821 0.87246 1.23260 0.92965 1.01569 1.03817 1.22433 0.97349 1.01436 0.94194 0.87949 1.21362 1.02058 0.97764 0.96249 0.95324 0.90793 0.92095 0.84858 1.02685 0.98244 0.92580 0.90081 0.87359 0.91901 0.90866 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.36 9.26 71.98 0.67 -3.70 16 2 C 0.11 4.08 2.84 44.92 0.13 4.21 16 3 H 0.01 0.57 7.56 -2.39 -0.02 0.55 16 4 N -0.68 -30.95 6.30 -495.58 -3.12 -34.07 16 5 C 0.21 11.82 5.24 85.56 0.45 12.27 16 6 C -0.54 -31.61 9.32 25.60 0.24 -31.37 16 7 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 8 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 9 N -0.94 -57.96 13.29 21.45 0.28 -57.68 16 10 Si 0.98 45.11 29.54 68.60 2.03 47.14 16 11 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 12 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 13 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 14 C -0.16 -4.55 4.83 -10.79 -0.05 -4.60 16 15 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 16 C -0.18 -4.51 9.82 30.60 0.30 -4.21 16 17 C -0.14 -3.11 5.61 -10.79 -0.06 -3.17 16 18 H 0.10 2.34 7.61 -2.39 -0.02 2.32 16 19 C -0.12 -2.06 10.19 71.98 0.73 -1.33 16 20 H 0.03 1.11 7.45 -2.39 -0.02 1.09 16 21 H 0.07 2.08 7.29 -2.39 -0.02 2.06 16 22 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 23 H 0.33 14.46 8.35 -89.70 -0.75 13.71 16 24 H -0.04 -2.70 8.06 -2.39 -0.02 -2.72 16 25 H 0.00 -0.03 7.44 -2.39 -0.02 -0.05 16 26 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 27 H 0.08 2.20 8.05 -2.39 -0.02 2.18 16 28 H 0.11 2.33 8.05 -2.39 -0.02 2.31 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 1.00 7.90 -2.38 -0.02 0.98 16 Total: -1.00 -64.81 259.45 2.39 -62.42 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.33 Total: 13.68 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: 2.86 Total: -31.48 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -2.84 Total: -91.75 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -64.81 2.39 -62.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307740126.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.576 kcal (2) G-P(sol) polarization free energy of solvation -64.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds