Wall clock time and date at job start Mon Mar 30 2020 02:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46901 * 2 1 4 4 N 1.46905 * 109.46937 * 240.00647 * 2 1 3 5 5 C 1.46894 * 110.99963 * 85.00023 * 4 2 1 6 6 C 1.50706 * 109.47063 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99846 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99912 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00021 * 0.27162 * 8 6 5 10 10 Si 1.86802 * 119.99711 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47050 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.46802 * 119.99857 * 10 8 6 13 13 H 1.48494 * 109.46966 * 239.99543 * 10 8 6 14 14 C 1.52993 * 109.47224 * 120.00664 * 2 1 3 15 15 H 1.08999 * 115.54896 * 39.74644 * 14 2 1 16 16 C 1.52997 * 117.49985 * 185.41992 * 14 2 1 17 17 C 1.52992 * 60.00026 * 107.48725 * 16 14 2 18 18 H 1.09004 * 117.50118 * 107.49456 * 17 16 14 19 19 C 1.53000 * 117.49799 * 252.50838 * 17 16 14 20 20 H 1.08997 * 109.46937 * 174.97885 * 1 2 3 21 21 H 1.08997 * 109.47333 * 294.97833 * 1 2 3 22 22 H 1.08999 * 109.46960 * 54.98166 * 1 2 3 23 23 H 1.00897 * 110.99760 * 208.95176 * 4 2 1 24 24 H 1.09004 * 109.47555 * 59.99682 * 5 4 2 25 25 H 1.09005 * 109.47503 * 299.99536 * 5 4 2 26 26 H 0.96997 * 120.00436 * 359.72916 * 9 8 6 27 27 H 1.09004 * 117.49907 * 214.97981 * 16 14 2 28 28 H 1.08998 * 117.49669 * 359.97272 * 16 14 2 29 29 H 1.08995 * 109.47055 * 133.44247 * 19 17 16 30 30 H 1.09010 * 109.47201 * 253.43737 * 19 17 16 31 31 H 1.09000 * 109.47509 * 13.43566 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1996 5 6 2.0824 0.2228 -2.3469 6 6 2.5885 -0.5212 -3.5558 7 1 2.8388 -1.5690 -3.4793 8 6 2.7328 0.1361 -4.7593 9 7 2.4340 1.4135 -4.8508 10 14 3.3607 -0.7860 -6.2576 11 1 3.6301 -2.1998 -5.8917 12 1 2.3373 -0.7387 -7.3326 13 1 4.6143 -0.1523 -6.7393 14 6 2.0400 -0.7214 1.2491 15 1 1.4839 -1.6136 1.5367 16 6 3.5493 -0.7182 1.5000 17 6 2.6273 0.1377 2.3706 18 1 2.4575 -0.1891 3.3966 19 6 2.6597 1.6524 2.1572 20 1 -0.3633 -1.0237 -0.0899 21 1 -0.3634 0.4339 0.9315 22 1 -0.3633 0.5897 -0.8416 23 1 2.9173 -1.1204 -1.0289 24 1 2.7588 1.0464 -2.1182 25 1 1.0870 0.6165 -2.5525 26 1 2.1083 1.8924 -4.0727 27 1 3.9861 -1.6083 1.9530 28 1 4.1789 -0.2026 0.7749 29 1 1.6400 2.0330 2.0994 30 1 3.1775 2.1259 2.9915 31 1 3.1848 1.8774 1.2289 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307740127.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:32 Heat of formation + Delta-G solvation = 2.668942 kcal Electronic energy + Delta-G solvation = -11195.353453 eV Core-core repulsion = 9283.657410 eV Total energy + Delta-G solvation = -1911.696043 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.56247 -34.91944 -32.63648 -29.50693 -28.41770 -25.60499 -23.14680 -21.73853 -20.76202 -18.95885 -16.79743 -15.92711 -14.58854 -14.33631 -13.74446 -13.52837 -12.97773 -12.39451 -12.29189 -12.00249 -11.93675 -11.44179 -11.35842 -11.03570 -10.69671 -10.67059 -10.11560 -10.06250 -9.77035 -9.63180 -8.57267 -8.38375 -7.32982 -6.35458 -4.03874 3.45848 3.50161 3.64333 3.88842 4.55014 4.80402 4.88054 5.05785 5.33917 5.40290 5.42008 5.64509 5.75512 5.85386 5.90599 5.94786 6.02619 6.11186 6.31137 6.37911 6.41251 6.52046 6.75859 7.01773 7.20111 7.86221 8.22323 8.54015 8.63012 8.90468 9.68088 11.04437 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.060126 B = 0.008863 C = 0.008696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.578971 B = 3158.317055 C = 3219.057844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.105 3.895 3 H 0.039 0.961 4 N -0.678 5.678 5 C 0.184 3.816 6 C -0.594 4.594 7 H 0.056 0.944 8 C 0.013 3.987 9 N -0.916 5.916 10 Si 1.079 2.921 11 H -0.289 1.289 12 H -0.287 1.287 13 H -0.288 1.288 14 C -0.142 4.142 15 H 0.104 0.896 16 C -0.178 4.178 17 C -0.155 4.155 18 H 0.100 0.900 19 C -0.123 4.123 20 H 0.057 0.943 21 H 0.045 0.955 22 H 0.052 0.948 23 H 0.332 0.668 24 H -0.027 1.027 25 H 0.018 0.982 26 H 0.267 0.733 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.082 -2.002 12.168 12.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.005 4.005 3 H 0.057 0.943 4 N -0.309 5.309 5 C 0.057 3.943 6 C -0.632 4.632 7 H 0.075 0.925 8 C -0.190 4.190 9 N -0.552 5.552 10 Si 0.907 3.093 11 H -0.214 1.214 12 H -0.213 1.213 13 H -0.215 1.215 14 C -0.160 4.160 15 H 0.122 0.878 16 C -0.215 4.215 17 C -0.174 4.174 18 H 0.118 0.882 19 C -0.180 4.180 20 H 0.077 0.923 21 H 0.064 0.936 22 H 0.071 0.929 23 H 0.149 0.851 24 H -0.010 1.010 25 H 0.036 0.964 26 H 0.077 0.923 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.167 -2.074 10.380 10.586 hybrid contribution 0.373 0.353 1.888 1.956 sum 0.206 -1.722 12.267 12.389 Atomic orbital electron populations 1.21709 0.95174 1.01960 1.00148 1.21108 0.95496 0.95297 0.88557 0.94344 1.60609 1.32787 1.34175 1.03348 1.19692 0.95284 0.90669 0.88639 1.22082 1.47349 0.98299 0.95514 0.92537 1.25873 0.95427 0.96478 1.01264 1.70728 1.42015 1.08833 1.33664 0.83412 0.76485 0.74557 0.74842 1.21447 1.21323 1.21452 1.22583 0.95518 1.00998 0.96914 0.87830 1.23061 0.93410 1.02037 1.03032 1.22339 1.05323 0.93897 0.95838 0.88225 1.21354 1.01813 0.93275 1.01513 0.92341 0.93561 0.92882 0.85051 1.00965 0.96392 0.92273 0.89000 0.88879 0.92187 0.92552 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 9.38 37.16 0.35 -1.93 16 2 C 0.11 1.94 2.59 -67.71 -0.18 1.77 16 3 H 0.04 0.75 5.63 -51.93 -0.29 0.46 16 4 N -0.68 -15.22 6.30 -107.99 -0.68 -15.90 16 5 C 0.18 4.96 4.55 -4.98 -0.02 4.94 16 6 C -0.59 -17.48 9.32 -34.44 -0.32 -17.80 16 7 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 8 C 0.01 0.38 5.46 -17.82 -0.10 0.29 16 9 N -0.92 -28.57 13.65 55.43 0.76 -27.81 16 10 Si 1.08 25.97 29.90 -169.99 -5.08 20.89 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 C -0.14 -2.14 5.17 -90.63 -0.47 -2.61 16 15 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 16 C -0.18 -2.50 9.22 -26.74 -0.25 -2.75 16 17 C -0.16 -2.02 6.41 -90.63 -0.58 -2.60 16 18 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 19 C -0.12 -1.56 8.83 37.16 0.33 -1.23 16 20 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.05 0.99 7.58 -51.93 -0.39 0.60 16 23 H 0.33 7.26 7.77 -39.29 -0.31 6.95 16 24 H -0.03 -0.77 7.92 -51.93 -0.41 -1.18 16 25 H 0.02 0.52 7.41 -51.93 -0.38 0.13 16 26 H 0.27 8.33 7.22 -40.82 -0.29 8.03 16 27 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.06 0.83 7.11 -51.93 -0.37 0.46 16 LS Contribution 255.61 15.07 3.85 3.85 Total: -1.00 -30.85 255.61 -7.43 -38.27 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -5.03 Total: 2.63 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -1.24 Total: -21.92 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.08 Total: -43.71 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -5.08 Total: 20.89 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.85 -7.43 -38.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307740127.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.940 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds