Wall clock time and date at job start Mon Mar 30 2020 01:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47469 * 2 1 4 4 C 1.52997 * 109.47033 * 177.02693 * 3 2 1 5 5 N 1.46899 * 115.55407 * 303.31371 * 4 3 2 6 6 C 1.46896 * 111.00341 * 185.40887 * 5 4 3 7 7 C 1.50709 * 109.46877 * 184.16183 * 6 5 4 8 8 H 1.07993 * 120.00401 * 359.72468 * 7 6 5 9 9 C 1.37878 * 119.99476 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00190 * 359.71860 * 9 7 6 11 11 Si 1.86800 * 119.99624 * 179.72716 * 9 7 6 12 12 H 1.48499 * 109.47297 * 89.99856 * 11 9 7 13 13 H 1.48507 * 109.46687 * 209.99473 * 11 9 7 14 14 H 1.48494 * 109.47289 * 329.99381 * 11 9 7 15 15 C 1.53004 * 117.50194 * 88.98882 * 4 3 2 16 16 C 1.53007 * 117.50029 * 157.64744 * 4 3 2 17 17 H 1.08997 * 109.47387 * 180.02562 * 1 2 3 18 18 H 1.08999 * 109.46859 * 300.00455 * 1 2 3 19 19 H 1.09003 * 109.46837 * 59.99695 * 1 2 3 20 20 H 1.09004 * 109.47334 * 240.00082 * 2 1 3 21 21 H 1.09003 * 109.46837 * 120.00305 * 2 1 3 22 22 H 1.08997 * 109.47113 * 57.02579 * 3 2 1 23 23 H 1.08998 * 109.46792 * 297.02749 * 3 2 1 24 24 H 1.00903 * 111.00028 * 309.37089 * 5 4 3 25 25 H 1.09003 * 109.47008 * 64.16626 * 6 5 4 26 26 H 1.08998 * 109.47324 * 304.16176 * 6 5 4 27 27 H 0.97005 * 119.99924 * 180.02562 * 10 9 7 28 28 H 1.08998 * 117.50066 * 215.00353 * 15 4 3 29 29 H 1.09002 * 117.49280 * 0.02562 * 15 4 3 30 30 H 1.09003 * 117.49395 * 359.97240 * 16 4 3 31 31 H 1.08997 * 117.50189 * 144.96983 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5682 1.4430 0.0748 5 7 4.1466 0.7346 1.2244 6 6 5.6049 0.9053 1.2686 7 6 6.1728 0.0839 2.3974 8 1 5.5156 -0.5024 3.0224 9 6 7.5308 0.0858 2.6360 10 7 8.3311 0.8000 1.8751 11 14 8.2338 -0.9263 4.0398 12 1 8.5733 -2.2859 3.5483 13 1 9.4591 -0.2676 4.5597 14 1 7.2281 -1.0300 5.1274 15 6 4.3402 1.3959 -1.2453 16 6 4.2997 2.6894 -0.4278 17 1 -0.3634 -1.0276 0.0005 18 1 -0.3633 0.5139 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 1.8934 -0.5138 -0.8900 21 1 1.8933 -0.5139 0.8900 22 1 1.6339 1.9715 0.8621 23 1 1.7209 1.9407 -0.9154 24 1 3.7207 1.0376 2.0875 25 1 5.8430 1.9568 1.4290 26 1 6.0383 0.5744 0.3248 27 1 9.2865 0.8011 2.0427 28 1 5.2772 0.8391 -1.2608 29 1 3.7593 1.3649 -2.1671 30 1 3.6922 3.5087 -0.8122 31 1 5.2098 2.9839 0.0948 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379441371.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:15 Heat of formation + Delta-G solvation = 6.688852 kcal Electronic energy + Delta-G solvation = -11152.901433 eV Core-core repulsion = 9241.379707 eV Total energy + Delta-G solvation = -1911.521726 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.33442 -33.92878 -32.93892 -31.01672 -27.46081 -25.89330 -22.20050 -21.88512 -20.99056 -18.52329 -16.64735 -15.19739 -14.89486 -14.36913 -13.97630 -13.48453 -13.07428 -12.34203 -12.32907 -11.90000 -11.51769 -11.19897 -10.99997 -10.92693 -10.62048 -10.49894 -10.34549 -9.86370 -9.77840 -9.52551 -9.10162 -8.43682 -7.09466 -6.02487 -4.04048 3.32760 3.38344 3.42255 4.39460 4.43638 5.10159 5.15224 5.31529 5.33111 5.36141 5.55015 5.64821 5.75975 6.01389 6.09332 6.15426 6.19458 6.20769 6.41788 6.58156 6.67072 6.76196 6.79909 7.28783 7.45010 7.80646 8.15216 8.41797 8.62907 9.05036 9.60421 11.08472 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.052941 B = 0.009512 C = 0.008383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.762637 B = 2943.017427 C = 3339.359920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.071 4.071 4 C 0.059 3.941 5 N -0.648 5.648 6 C 0.189 3.811 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.055 3.945 10 N -0.898 5.898 11 Si 0.899 3.101 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.274 1.274 15 C -0.174 4.174 16 C -0.230 4.230 17 H 0.050 0.950 18 H 0.050 0.950 19 H 0.047 0.953 20 H 0.058 0.942 21 H 0.076 0.924 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.331 0.669 25 H -0.008 1.008 26 H 0.033 0.967 27 H 0.261 0.739 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.833 1.223 -3.607 11.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.109 4.109 4 C -0.035 4.035 5 N -0.276 5.276 6 C 0.062 3.938 7 C -0.552 4.552 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.538 5.538 11 Si 0.727 3.273 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.212 4.212 16 C -0.270 4.270 17 H 0.069 0.931 18 H 0.069 0.931 19 H 0.066 0.934 20 H 0.077 0.923 21 H 0.095 0.905 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.149 0.851 25 H 0.009 0.991 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.118 0.882 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.606 0.640 -3.927 11.327 hybrid contribution 0.742 0.486 0.899 1.263 sum -9.863 1.126 -3.028 10.379 Atomic orbital electron populations 1.21813 0.96928 1.01089 1.01079 1.21377 0.93956 0.96713 1.03284 1.21034 0.91675 0.97209 1.01005 1.21711 0.92168 0.95957 0.93615 1.60440 1.07981 1.56223 1.02958 1.19709 0.81104 0.95067 0.97883 1.21192 0.92126 1.27614 1.14281 0.91974 1.24984 0.97052 0.95793 0.96764 1.69963 1.03971 1.40789 1.39051 0.86481 0.78423 0.80153 0.82241 1.20624 1.21310 1.19849 1.23114 1.02926 1.00928 0.94197 1.23623 1.04674 0.92302 1.06406 0.93111 0.93106 0.93427 0.92279 0.90522 0.92199 0.92312 0.85124 0.99057 0.94883 0.92929 0.88214 0.89785 0.90161 0.88108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 37.16 0.37 -1.36 16 2 C -0.12 -1.64 5.84 -26.73 -0.16 -1.80 16 3 C -0.07 -1.05 5.28 -26.73 -0.14 -1.19 16 4 C 0.06 1.08 2.65 -131.60 -0.35 0.74 16 5 N -0.65 -14.16 6.14 -101.21 -0.62 -14.78 16 6 C 0.19 4.98 4.45 -4.97 -0.02 4.96 16 7 C -0.51 -14.73 9.35 -34.44 -0.32 -15.05 16 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 10 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 11 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 15 C -0.17 -3.20 9.59 -26.69 -0.26 -3.45 16 16 C -0.23 -4.23 9.53 -26.69 -0.25 -4.48 16 17 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 18 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 19 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 20 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 21 H 0.08 1.22 7.75 -51.93 -0.40 0.82 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.06 0.79 8.10 -51.93 -0.42 0.36 16 24 H 0.33 6.93 8.84 -39.29 -0.35 6.58 16 25 H -0.01 -0.23 6.49 -51.93 -0.34 -0.57 16 26 H 0.03 0.94 6.07 -51.93 -0.32 0.63 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 28 H 0.10 2.08 6.33 -51.93 -0.33 1.76 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.10 2.12 6.16 -51.93 -0.32 1.80 16 LS Contribution 255.21 15.07 3.85 3.85 Total: -1.00 -29.52 255.21 -7.26 -36.79 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -4.98 Total: 3.73 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: -1.23 Total: -20.15 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.12 Total: -41.11 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.52 -7.26 -36.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379441371.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.475 kcal (2) G-P(sol) polarization free energy of solvation -29.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds