Wall clock time and date at job start Mon Mar 30 2020 01:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47469 * 2 1 4 4 C 1.52997 * 109.47033 * 177.02693 * 3 2 1 5 5 N 1.46899 * 115.55407 * 303.31371 * 4 3 2 6 6 C 1.46896 * 111.00341 * 185.40887 * 5 4 3 7 7 C 1.50709 * 109.46877 * 184.16183 * 6 5 4 8 8 H 1.07993 * 120.00401 * 359.72468 * 7 6 5 9 9 C 1.37878 * 119.99476 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00190 * 359.71860 * 9 7 6 11 11 Si 1.86800 * 119.99624 * 179.72716 * 9 7 6 12 12 H 1.48499 * 109.47297 * 89.99856 * 11 9 7 13 13 H 1.48507 * 109.46687 * 209.99473 * 11 9 7 14 14 H 1.48494 * 109.47289 * 329.99381 * 11 9 7 15 15 C 1.53004 * 117.50194 * 88.98882 * 4 3 2 16 16 C 1.53007 * 117.50029 * 157.64744 * 4 3 2 17 17 H 1.08997 * 109.47387 * 180.02562 * 1 2 3 18 18 H 1.08999 * 109.46859 * 300.00455 * 1 2 3 19 19 H 1.09003 * 109.46837 * 59.99695 * 1 2 3 20 20 H 1.09004 * 109.47334 * 240.00082 * 2 1 3 21 21 H 1.09003 * 109.46837 * 120.00305 * 2 1 3 22 22 H 1.08997 * 109.47113 * 57.02579 * 3 2 1 23 23 H 1.08998 * 109.46792 * 297.02749 * 3 2 1 24 24 H 1.00903 * 111.00028 * 309.37089 * 5 4 3 25 25 H 1.09003 * 109.47008 * 64.16626 * 6 5 4 26 26 H 1.08998 * 109.47324 * 304.16176 * 6 5 4 27 27 H 0.97005 * 119.99924 * 180.02562 * 10 9 7 28 28 H 1.08998 * 117.50066 * 215.00353 * 15 4 3 29 29 H 1.09002 * 117.49280 * 0.02562 * 15 4 3 30 30 H 1.09003 * 117.49395 * 359.97240 * 16 4 3 31 31 H 1.08997 * 117.50189 * 144.96983 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5682 1.4430 0.0748 5 7 4.1466 0.7346 1.2244 6 6 5.6049 0.9053 1.2686 7 6 6.1728 0.0839 2.3974 8 1 5.5156 -0.5024 3.0224 9 6 7.5308 0.0858 2.6360 10 7 8.3311 0.8000 1.8751 11 14 8.2338 -0.9263 4.0398 12 1 8.5733 -2.2859 3.5483 13 1 9.4591 -0.2676 4.5597 14 1 7.2281 -1.0300 5.1274 15 6 4.3402 1.3959 -1.2453 16 6 4.2997 2.6894 -0.4278 17 1 -0.3634 -1.0276 0.0005 18 1 -0.3633 0.5139 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 1.8934 -0.5138 -0.8900 21 1 1.8933 -0.5139 0.8900 22 1 1.6339 1.9715 0.8621 23 1 1.7209 1.9407 -0.9154 24 1 3.7207 1.0376 2.0875 25 1 5.8430 1.9568 1.4290 26 1 6.0383 0.5744 0.3248 27 1 9.2865 0.8011 2.0427 28 1 5.2772 0.8391 -1.2608 29 1 3.7593 1.3649 -2.1671 30 1 3.6922 3.5087 -0.8122 31 1 5.2098 2.9839 0.0948 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379441371.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:15 Heat of formation + Delta-G solvation = -12.329226 kcal Electronic energy + Delta-G solvation = -11153.726119 eV Core-core repulsion = 9241.379707 eV Total energy + Delta-G solvation = -1912.346412 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.87948 -35.54637 -34.59469 -32.93050 -28.94638 -27.66935 -24.04135 -23.46194 -22.23251 -20.10313 -18.70397 -16.84921 -16.73171 -15.93734 -15.38958 -15.19784 -14.39432 -14.12275 -13.69091 -13.51299 -13.13793 -12.81267 -12.68333 -12.48608 -12.12449 -12.02567 -11.83951 -11.53824 -11.42199 -11.08230 -10.92152 -10.62433 -8.89188 -8.24115 -6.35346 1.39225 1.41295 1.52561 2.38183 2.91290 3.08711 3.52012 3.80531 3.98246 4.07161 4.38272 4.45191 4.60575 4.71477 4.88495 4.90972 4.97870 5.02660 5.12527 5.19683 5.22585 5.33219 5.42847 5.49750 5.60667 5.65550 6.02893 6.45398 6.72786 6.88110 7.35331 8.87137 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.052941 B = 0.009512 C = 0.008383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.762637 B = 2943.017427 C = 3339.359920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.063 4.063 4 C 0.051 3.949 5 N -0.649 5.649 6 C 0.208 3.792 7 C -0.538 4.538 8 H 0.063 0.937 9 C 0.001 3.999 10 N -0.934 5.934 11 Si 0.974 3.026 12 H -0.273 1.273 13 H -0.281 1.281 14 H -0.262 1.262 15 C -0.176 4.176 16 C -0.227 4.227 17 H 0.056 0.944 18 H 0.056 0.944 19 H 0.062 0.938 20 H 0.051 0.949 21 H 0.052 0.948 22 H 0.070 0.930 23 H 0.084 0.916 24 H 0.336 0.664 25 H -0.034 1.034 26 H 0.005 0.995 27 H 0.265 0.735 28 H 0.064 0.936 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.424 1.007 -3.405 12.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C -0.100 4.100 4 C -0.042 4.042 5 N -0.278 5.278 6 C 0.080 3.920 7 C -0.576 4.576 8 H 0.082 0.918 9 C -0.197 4.197 10 N -0.575 5.575 11 Si 0.798 3.202 12 H -0.199 1.199 13 H -0.206 1.206 14 H -0.187 1.187 15 C -0.214 4.214 16 C -0.266 4.266 17 H 0.075 0.925 18 H 0.075 0.925 19 H 0.081 0.919 20 H 0.070 0.930 21 H 0.071 0.929 22 H 0.089 0.911 23 H 0.102 0.898 24 H 0.155 0.845 25 H -0.017 1.017 26 H 0.023 0.977 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.137 0.863 30 H 0.133 0.867 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.221 0.426 -3.729 12.784 hybrid contribution 1.233 0.579 0.784 1.572 sum -10.988 1.005 -2.945 11.420 Atomic orbital electron populations 1.21748 0.94422 1.01927 1.02137 1.21337 0.96108 0.95966 1.01814 1.21065 0.88209 0.97996 1.02776 1.22054 0.94506 0.95534 0.92069 1.60298 1.05458 1.57448 1.04578 1.19286 0.83847 0.92978 0.95860 1.21582 0.92842 1.28129 1.15052 0.91829 1.25961 0.97391 0.96853 0.99538 1.70097 1.04405 1.42133 1.40828 0.85321 0.77770 0.78357 0.78782 1.19874 1.20598 1.18656 1.23129 1.01966 1.00466 0.95793 1.23568 1.03647 0.93284 1.06139 0.92484 0.92454 0.91928 0.92984 0.92868 0.91109 0.89773 0.84526 1.01691 0.97713 0.92633 0.91750 0.86273 0.86680 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.91 71.98 0.71 -2.15 16 2 C -0.11 -3.02 5.84 30.59 0.18 -2.84 16 3 C -0.06 -1.68 5.28 30.59 0.16 -1.52 16 4 C 0.05 1.85 2.65 3.53 0.01 1.86 16 5 N -0.65 -28.83 6.14 -474.13 -2.91 -31.74 16 6 C 0.21 11.42 4.45 85.56 0.38 11.80 16 7 C -0.54 -31.50 9.35 25.60 0.24 -31.26 16 8 H 0.06 3.62 7.81 -2.91 -0.02 3.59 16 9 C 0.00 0.04 5.46 84.66 0.46 0.50 16 10 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 11 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 14 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 15 C -0.18 -6.42 9.59 30.62 0.29 -6.12 16 16 C -0.23 -8.23 9.53 30.62 0.29 -7.94 16 17 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 18 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 19 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 20 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 21 H 0.05 1.64 7.75 -2.39 -0.02 1.62 16 22 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.08 1.89 8.10 -2.39 -0.02 1.87 16 24 H 0.34 14.18 8.84 -89.69 -0.79 13.39 16 25 H -0.03 -2.04 6.49 -2.39 -0.02 -2.05 16 26 H 0.00 0.29 6.07 -2.39 -0.01 0.28 16 27 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 28 H 0.06 2.81 6.33 -2.39 -0.02 2.80 16 29 H 0.12 3.47 8.14 -2.39 -0.02 3.45 16 30 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 31 H 0.06 2.83 6.16 -2.39 -0.01 2.82 16 Total: -1.00 -64.54 255.21 2.43 -62.11 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.30 Total: 17.52 kcal Atomic # 6 Polarization: -40.41 SS G_CDS: 2.73 Total: -37.68 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -2.63 Total: -89.07 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -64.54 2.43 -62.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379441371.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.780 kcal (2) G-P(sol) polarization free energy of solvation -64.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds