Wall clock time and date at job start Mon Mar 30 2020 02:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09003 * 115.55042 * 330.66471 * 3 2 1 5 5 C 1.52999 * 117.49922 * 116.37985 * 3 2 1 6 6 C 1.53001 * 60.00081 * 107.48816 * 5 3 2 7 7 H 1.09002 * 117.50183 * 107.49104 * 6 5 3 8 8 C 1.53002 * 117.51587 * 252.52180 * 6 5 3 9 9 N 1.46909 * 109.46985 * 243.63089 * 8 6 5 10 10 C 1.46898 * 110.99948 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.47048 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99794 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00056 * 179.97438 * 11 10 9 14 14 N 1.31519 * 120.00118 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00057 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47035 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47140 * 120.00264 * 15 13 11 18 18 H 1.48503 * 109.47216 * 240.00462 * 15 13 11 19 19 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 20 20 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 21 21 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 23 23 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 24 24 H 1.09000 * 117.49492 * 214.97220 * 5 3 2 25 25 H 1.08993 * 117.49749 * 359.97438 * 5 3 2 26 26 H 1.09002 * 109.47193 * 3.62444 * 8 6 5 27 27 H 1.08997 * 109.47284 * 123.62985 * 8 6 5 28 28 H 1.00892 * 111.00163 * 56.03845 * 9 8 6 29 29 H 1.08998 * 109.47200 * 299.99887 * 10 9 8 30 30 H 1.09005 * 109.46928 * 59.99856 * 10 9 8 31 31 H 0.96996 * 120.00223 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1715 -0.4818 5 6 2.8440 1.9076 1.2158 6 6 3.5501 1.6579 -0.1183 7 1 3.8920 2.5288 -0.6776 8 6 4.4346 0.4142 -0.2281 9 7 5.8279 0.8225 -0.4521 10 6 6.7083 -0.3483 -0.5622 11 6 8.1258 0.1089 -0.7917 12 1 8.3502 1.1638 -0.8495 13 6 9.1362 -0.8193 -0.9268 14 7 8.8630 -2.1038 -0.8558 15 14 10.8934 -0.2525 -1.2105 16 1 10.9347 1.2314 -1.2495 17 1 11.7561 -0.7424 -0.1055 18 1 11.3864 -0.7959 -2.5016 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3635 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 2.7213 2.9428 1.5342 25 1 3.0092 1.1860 2.0158 26 1 4.3686 -0.1612 0.6954 27 1 4.0969 -0.1992 -1.0634 28 1 6.1439 1.4450 0.2763 29 1 6.6580 -0.9286 0.3591 30 1 6.3864 -0.9674 -1.3997 31 1 9.5738 -2.7569 -0.9512 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387882011.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:44 Heat of formation + Delta-G solvation = -17.410002 kcal Electronic energy + Delta-G solvation = -10747.790453 eV Core-core repulsion = 8835.223722 eV Total energy + Delta-G solvation = -1912.566731 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.44588 -36.58347 -34.43130 -32.78344 -29.46240 -26.23074 -24.78414 -23.41020 -22.22554 -20.38207 -18.52224 -16.94304 -16.72380 -15.87141 -15.46023 -15.21872 -14.64845 -14.39048 -13.82794 -13.50177 -13.16298 -12.89386 -12.66507 -12.63232 -12.27251 -12.19494 -11.94572 -11.74931 -11.31736 -10.77063 -10.66329 -10.61172 -9.16323 -8.24502 -6.36450 1.41018 1.42051 1.56367 2.39437 2.85497 3.08745 3.48111 3.77250 3.96554 4.13985 4.31043 4.44999 4.50731 4.61072 4.75360 4.84284 4.86978 4.96926 5.06818 5.18686 5.22544 5.23635 5.29555 5.34591 5.51758 5.60652 5.99696 6.42702 6.70275 6.86806 7.34977 8.87761 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.088105 B = 0.006740 C = 0.006410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 317.726837 B = 4153.309550 C = 4367.090594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 C -0.134 4.134 4 H 0.120 0.880 5 C -0.170 4.170 6 C -0.159 4.159 7 H 0.107 0.893 8 C 0.095 3.905 9 N -0.688 5.688 10 C 0.206 3.794 11 C -0.537 4.537 12 H 0.066 0.934 13 C 0.000 4.000 14 N -0.936 5.936 15 Si 0.978 3.022 16 H -0.262 1.262 17 H -0.276 1.276 18 H -0.277 1.277 19 H 0.061 0.939 20 H 0.061 0.939 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.109 0.891 25 H 0.087 0.913 26 H 0.014 0.986 27 H 0.055 0.945 28 H 0.336 0.664 29 H -0.040 1.040 30 H -0.001 1.001 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.958 6.333 2.933 14.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.138 4.138 3 C -0.153 4.153 4 H 0.138 0.862 5 C -0.207 4.207 6 C -0.178 4.178 7 H 0.125 0.875 8 C -0.034 4.034 9 N -0.319 5.319 10 C 0.078 3.922 11 C -0.575 4.575 12 H 0.084 0.916 13 C -0.198 4.198 14 N -0.576 5.576 15 Si 0.801 3.199 16 H -0.186 1.186 17 H -0.201 1.201 18 H -0.203 1.203 19 H 0.080 0.920 20 H 0.080 0.920 21 H 0.077 0.923 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.127 0.873 25 H 0.106 0.894 26 H 0.032 0.968 27 H 0.073 0.927 28 H 0.153 0.847 29 H -0.023 1.023 30 H 0.017 0.983 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.968 6.221 2.242 14.557 hybrid contribution 1.037 -0.565 0.735 1.391 sum -11.931 5.656 2.977 13.535 Atomic orbital electron populations 1.21703 0.93831 1.02051 1.02366 1.21136 0.97214 0.94085 1.01329 1.22524 0.92293 0.98482 1.02005 0.86246 1.23233 1.03721 1.02837 0.90941 1.22302 0.93908 0.99300 1.02273 0.87483 1.21392 0.88499 0.95452 0.98063 1.60538 1.01701 1.18319 1.51312 1.19227 0.91773 0.88117 0.93046 1.21582 0.92794 0.93732 1.49418 0.91623 1.26012 1.04410 0.94763 0.94655 1.70105 1.34634 1.01717 1.51169 0.85213 0.77952 0.78836 0.77850 1.18559 1.20149 1.20257 0.92023 0.92036 0.92317 0.92665 0.92730 0.87261 0.89447 0.96829 0.92693 0.84738 1.02273 0.98334 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.87 71.98 0.71 -1.80 16 2 C -0.10 -2.31 5.30 30.59 0.16 -2.15 16 3 C -0.13 -3.15 5.74 -10.79 -0.06 -3.21 16 4 H 0.12 2.37 8.07 -2.39 -0.02 2.36 16 5 C -0.17 -4.08 9.82 30.59 0.30 -3.78 16 6 C -0.16 -4.70 5.95 -10.79 -0.06 -4.77 16 7 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 8 C 0.10 3.62 5.05 86.30 0.44 4.06 16 9 N -0.69 -31.51 6.49 -517.91 -3.36 -34.87 16 10 C 0.21 11.60 5.44 85.56 0.47 12.07 16 11 C -0.54 -31.65 9.32 25.60 0.24 -31.41 16 12 H 0.07 3.75 7.81 -2.91 -0.02 3.73 16 13 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 14 N -0.94 -57.78 13.29 21.45 0.28 -57.49 16 15 Si 0.98 44.94 29.54 68.60 2.03 46.96 16 16 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 19 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 20 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 21 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.05 1.41 7.60 -2.39 -0.02 1.39 16 23 H 0.05 1.33 7.88 -2.39 -0.02 1.31 16 24 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.09 2.16 7.92 -2.39 -0.02 2.15 16 26 H 0.01 0.53 7.88 -2.39 -0.02 0.51 16 27 H 0.05 2.18 7.60 -2.39 -0.02 2.16 16 28 H 0.34 14.53 8.72 -89.70 -0.78 13.75 16 29 H -0.04 -2.43 8.14 -2.39 -0.02 -2.45 16 30 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 31 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -64.31 261.36 1.90 -62.41 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.30 Total: 13.54 kcal Atomic # 6 Polarization: -33.20 SS G_CDS: 2.65 Total: -30.55 kcal Atomic # 7 Polarization: -89.29 SS G_CDS: -3.08 Total: -92.36 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -64.31 1.90 -62.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387882011.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.002 kcal (2) G-P(sol) polarization free energy of solvation -64.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds