Wall clock time and date at job start Mon Mar 30 2020 01:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 115.56176 * 2 1 4 4 C 1.53002 * 117.49710 * 214.31650 * 2 1 3 5 5 C 1.52998 * 117.50009 * 145.69220 * 2 1 3 6 6 C 1.53000 * 117.51538 * 0.02562 * 5 2 1 7 7 N 1.46898 * 117.49742 * 214.97795 * 5 2 1 8 8 C 1.46903 * 110.99849 * 179.97438 * 7 5 2 9 9 C 1.50694 * 109.47066 * 180.02562 * 8 7 5 10 10 H 1.08000 * 120.00563 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99902 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99913 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46985 * 179.97438 * 13 11 9 15 15 H 1.48494 * 109.47276 * 299.99832 * 13 11 9 16 16 H 1.48498 * 109.47150 * 60.00043 * 13 11 9 17 17 H 1.09002 * 109.47229 * 274.30900 * 1 2 3 18 18 H 1.09001 * 109.47492 * 34.30696 * 1 2 3 19 19 H 1.09001 * 109.47592 * 154.30773 * 1 2 3 20 20 H 1.08999 * 109.47394 * 205.69009 * 3 2 1 21 21 H 1.09000 * 109.47344 * 325.69148 * 3 2 1 22 22 H 1.08993 * 109.46816 * 85.68990 * 3 2 1 23 23 H 1.09000 * 117.49634 * 145.01957 * 4 2 1 24 24 H 1.09000 * 117.51935 * 359.97438 * 4 2 1 25 25 H 1.09001 * 109.46865 * 299.87890 * 6 5 2 26 26 H 1.08994 * 109.47047 * 59.88059 * 6 5 2 27 27 H 1.09007 * 109.46696 * 179.88440 * 6 5 2 28 28 H 1.00895 * 110.99776 * 303.93938 * 7 5 2 29 29 H 1.09007 * 109.47052 * 59.99769 * 8 7 5 30 30 H 1.09003 * 109.46808 * 300.00462 * 8 7 5 31 31 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2364 -1.1209 -0.7651 5 6 2.2364 -1.1210 0.7649 6 6 1.3592 -2.1568 1.4710 7 7 3.4966 -0.7897 1.4432 8 6 4.0495 -1.9647 2.1301 9 6 5.3385 -1.5869 2.8132 10 1 5.7102 -0.5752 2.7436 11 6 6.0440 -2.5330 3.5261 12 7 5.5916 -3.7650 3.6104 13 14 7.6422 -2.0648 4.3722 14 1 8.2010 -3.2526 5.0667 15 1 8.6145 -1.5798 3.3600 16 1 7.3813 -0.9899 5.3630 17 1 -0.3634 0.0772 1.0248 18 1 -0.3634 0.8489 -0.5792 19 1 -0.3634 -0.9260 -0.4455 20 1 3.1823 1.3085 -0.4455 21 1 1.5812 2.0743 -0.5792 22 1 2.2772 1.7413 1.0247 23 1 3.1714 -0.8750 -1.2684 24 1 1.6114 -1.8588 -1.2682 25 1 0.7311 -1.6582 2.2092 26 1 0.7288 -2.6594 0.7376 27 1 1.9929 -2.8905 1.9692 28 1 4.1652 -0.4021 0.7946 29 1 4.2408 -2.7540 1.4031 30 1 3.3356 -2.3204 2.8731 31 1 6.0881 -4.4307 4.1117 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575563764.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:39 Heat of formation + Delta-G solvation = 10.436298 kcal Electronic energy + Delta-G solvation = -11286.789108 eV Core-core repulsion = 9375.429883 eV Total energy + Delta-G solvation = -1911.359225 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.78632 -33.92087 -31.88996 -29.24200 -27.87142 -26.44562 -25.84920 -21.97209 -19.90833 -17.64634 -16.38979 -14.87146 -14.82162 -14.25222 -13.62947 -13.35129 -12.57285 -12.41527 -12.17805 -11.80369 -11.77923 -11.70368 -11.40856 -11.08380 -10.80549 -10.77504 -10.60008 -10.02338 -9.69512 -9.13807 -8.91625 -8.41999 -7.08529 -6.02487 -4.04224 3.34164 3.37836 3.41091 4.19134 4.43786 4.98228 5.13039 5.23647 5.33417 5.42008 5.51196 5.89735 5.91823 6.12608 6.16150 6.17784 6.21841 6.26125 6.31844 6.47064 6.56978 6.73462 6.79317 7.29919 7.45433 7.80005 8.14794 8.41481 8.63081 9.04599 9.60255 11.08503 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.068911 B = 0.009379 C = 0.008703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.224594 B = 2984.533338 C = 3216.514168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.132 4.132 3 C -0.103 4.103 4 C -0.217 4.217 5 C 0.078 3.922 6 C -0.119 4.119 7 N -0.650 5.650 8 C 0.193 3.807 9 C -0.516 4.516 10 H 0.061 0.939 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.899 3.101 14 H -0.288 1.288 15 H -0.277 1.277 16 H -0.276 1.276 17 H 0.057 0.943 18 H 0.052 0.948 19 H 0.052 0.948 20 H 0.051 0.949 21 H 0.046 0.954 22 H 0.064 0.936 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.331 0.669 29 H -0.012 1.012 30 H 0.036 0.964 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.407 5.194 -6.377 11.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.133 4.133 3 C -0.161 4.161 4 C -0.257 4.257 5 C -0.016 4.016 6 C -0.176 4.176 7 N -0.278 5.278 8 C 0.067 3.933 9 C -0.555 4.555 10 H 0.079 0.921 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.727 3.273 14 H -0.213 1.213 15 H -0.203 1.203 16 H -0.202 1.202 17 H 0.076 0.924 18 H 0.071 0.929 19 H 0.071 0.929 20 H 0.071 0.929 21 H 0.065 0.935 22 H 0.083 0.917 23 H 0.104 0.896 24 H 0.103 0.897 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.149 0.851 29 H 0.006 0.994 30 H 0.054 0.946 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.643 5.246 -5.688 10.876 hybrid contribution 1.247 -0.372 -0.389 1.358 sum -6.396 4.874 -6.077 10.079 Atomic orbital electron populations 1.21261 0.92737 1.01003 1.01444 1.21765 0.94156 0.91846 1.05547 1.21169 0.99171 0.93752 1.01966 1.23939 1.02219 1.01905 0.97666 1.21757 0.94631 0.96392 0.88824 1.21459 0.98675 0.97737 0.99766 1.60410 1.03644 1.33215 1.30535 1.19632 0.94502 0.86176 0.92969 1.21167 1.06087 0.96444 1.31807 0.92104 1.24976 0.98112 0.94875 0.96540 1.69951 1.39359 1.02413 1.41957 0.86541 0.83294 0.77770 0.79671 1.21318 1.20301 1.20166 0.92374 0.92889 0.92927 0.92948 0.93496 0.91686 0.89556 0.89730 0.92285 0.93111 0.90245 0.85142 0.99419 0.94611 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 8.88 37.16 0.33 -1.08 16 2 C -0.13 -2.07 2.70 -154.51 -0.42 -2.49 16 3 C -0.10 -1.52 9.16 37.16 0.34 -1.18 16 4 C -0.22 -3.57 9.17 -26.73 -0.24 -3.81 16 5 C 0.08 1.45 2.89 -131.60 -0.38 1.07 16 6 C -0.12 -2.14 8.50 37.16 0.32 -1.82 16 7 N -0.65 -14.41 6.23 -101.21 -0.63 -15.04 16 8 C 0.19 5.11 4.45 -4.98 -0.02 5.09 16 9 C -0.52 -14.80 9.32 -34.44 -0.32 -15.12 16 10 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 13 Si 0.90 21.87 29.54 -169.99 -5.02 16.84 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H 0.06 0.76 8.03 -51.93 -0.42 0.34 16 18 H 0.05 0.61 7.92 -51.93 -0.41 0.20 16 19 H 0.05 0.65 7.77 -51.93 -0.40 0.25 16 20 H 0.05 0.77 7.69 -51.93 -0.40 0.37 16 21 H 0.05 0.59 7.92 -51.93 -0.41 0.18 16 22 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.09 1.41 7.99 -51.93 -0.42 1.00 16 24 H 0.08 1.28 7.96 -51.93 -0.41 0.87 16 25 H 0.06 1.00 8.03 -51.93 -0.42 0.59 16 26 H 0.05 0.78 7.77 -51.93 -0.40 0.38 16 27 H 0.08 1.63 5.61 -51.93 -0.29 1.34 16 28 H 0.33 7.10 8.08 -39.29 -0.32 6.79 16 29 H -0.01 -0.34 8.14 -51.92 -0.42 -0.76 16 30 H 0.04 1.01 6.35 -51.93 -0.33 0.68 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 254.42 15.07 3.83 3.83 Total: -1.00 -29.48 254.42 -6.60 -36.08 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.02 Total: 2.25 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -0.50 Total: -17.81 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.11 Total: -41.20 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.48 -6.60 -36.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575563764.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.517 kcal (2) G-P(sol) polarization free energy of solvation -29.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds