Wall clock time and date at job start Mon Mar 30 2020 01:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 115.56176 * 2 1 4 4 C 1.53002 * 117.49710 * 214.31650 * 2 1 3 5 5 C 1.52998 * 117.50009 * 145.69220 * 2 1 3 6 6 C 1.53000 * 117.51538 * 0.02562 * 5 2 1 7 7 N 1.46898 * 117.49742 * 214.97795 * 5 2 1 8 8 C 1.46903 * 110.99849 * 179.97438 * 7 5 2 9 9 C 1.50694 * 109.47066 * 180.02562 * 8 7 5 10 10 H 1.08000 * 120.00563 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99902 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99913 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46985 * 179.97438 * 13 11 9 15 15 H 1.48494 * 109.47276 * 299.99832 * 13 11 9 16 16 H 1.48498 * 109.47150 * 60.00043 * 13 11 9 17 17 H 1.09002 * 109.47229 * 274.30900 * 1 2 3 18 18 H 1.09001 * 109.47492 * 34.30696 * 1 2 3 19 19 H 1.09001 * 109.47592 * 154.30773 * 1 2 3 20 20 H 1.08999 * 109.47394 * 205.69009 * 3 2 1 21 21 H 1.09000 * 109.47344 * 325.69148 * 3 2 1 22 22 H 1.08993 * 109.46816 * 85.68990 * 3 2 1 23 23 H 1.09000 * 117.49634 * 145.01957 * 4 2 1 24 24 H 1.09000 * 117.51935 * 359.97438 * 4 2 1 25 25 H 1.09001 * 109.46865 * 299.87890 * 6 5 2 26 26 H 1.08994 * 109.47047 * 59.88059 * 6 5 2 27 27 H 1.09007 * 109.46696 * 179.88440 * 6 5 2 28 28 H 1.00895 * 110.99776 * 303.93938 * 7 5 2 29 29 H 1.09007 * 109.47052 * 59.99769 * 8 7 5 30 30 H 1.09003 * 109.46808 * 300.00462 * 8 7 5 31 31 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2364 -1.1209 -0.7651 5 6 2.2364 -1.1210 0.7649 6 6 1.3592 -2.1568 1.4710 7 7 3.4966 -0.7897 1.4432 8 6 4.0495 -1.9647 2.1301 9 6 5.3385 -1.5869 2.8132 10 1 5.7102 -0.5752 2.7436 11 6 6.0440 -2.5330 3.5261 12 7 5.5916 -3.7650 3.6104 13 14 7.6422 -2.0648 4.3722 14 1 8.2010 -3.2526 5.0667 15 1 8.6145 -1.5798 3.3600 16 1 7.3813 -0.9899 5.3630 17 1 -0.3634 0.0772 1.0248 18 1 -0.3634 0.8489 -0.5792 19 1 -0.3634 -0.9260 -0.4455 20 1 3.1823 1.3085 -0.4455 21 1 1.5812 2.0743 -0.5792 22 1 2.2772 1.7413 1.0247 23 1 3.1714 -0.8750 -1.2684 24 1 1.6114 -1.8588 -1.2682 25 1 0.7311 -1.6582 2.2092 26 1 0.7288 -2.6594 0.7376 27 1 1.9929 -2.8905 1.9692 28 1 4.1652 -0.4021 0.7946 29 1 4.2408 -2.7540 1.4031 30 1 3.3356 -2.3204 2.8731 31 1 6.0881 -4.4307 4.1117 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575563764.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:39 Heat of formation + Delta-G solvation = -8.660318 kcal Electronic energy + Delta-G solvation = -11287.617199 eV Core-core repulsion = 9375.429883 eV Total energy + Delta-G solvation = -1912.187316 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.19449 -35.85331 -33.84320 -30.70109 -29.23042 -27.94543 -27.53718 -23.98601 -21.33150 -19.24380 -18.32426 -16.78270 -16.40355 -15.91462 -15.03408 -14.69445 -14.28062 -14.12646 -13.79768 -13.29368 -13.06655 -13.00782 -12.87470 -12.72461 -12.65779 -12.46856 -12.03859 -11.86632 -11.33752 -11.10150 -10.62050 -10.30811 -8.80878 -8.22754 -6.33997 1.39986 1.43702 1.51715 2.39044 2.83323 3.10103 3.50959 3.80147 3.94275 4.02688 4.28677 4.63071 4.77385 4.83916 4.87828 4.90426 4.94827 5.08566 5.12198 5.16633 5.19172 5.26725 5.31647 5.40370 5.56900 5.62645 6.04041 6.48457 6.73231 6.88944 7.36545 8.88410 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.068911 B = 0.009379 C = 0.008703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.224594 B = 2984.533338 C = 3216.514168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.111 4.111 3 C -0.105 4.105 4 C -0.209 4.209 5 C 0.034 3.966 6 C -0.112 4.112 7 N -0.651 5.651 8 C 0.213 3.787 9 C -0.541 4.541 10 H 0.062 0.938 11 C 0.002 3.998 12 N -0.932 5.932 13 Si 0.973 3.027 14 H -0.281 1.281 15 H -0.267 1.267 16 H -0.269 1.269 17 H 0.057 0.943 18 H 0.075 0.925 19 H 0.062 0.938 20 H 0.047 0.953 21 H 0.075 0.925 22 H 0.051 0.949 23 H 0.084 0.916 24 H 0.101 0.899 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.042 0.958 28 H 0.332 0.668 29 H -0.043 1.043 30 H 0.012 0.988 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.762 6.434 -7.066 12.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.112 4.112 3 C -0.162 4.162 4 C -0.248 4.248 5 C -0.058 4.058 6 C -0.170 4.170 7 N -0.279 5.279 8 C 0.086 3.914 9 C -0.579 4.579 10 H 0.080 0.920 11 C -0.196 4.196 12 N -0.572 5.572 13 Si 0.797 3.203 14 H -0.206 1.206 15 H -0.192 1.192 16 H -0.194 1.194 17 H 0.076 0.924 18 H 0.094 0.906 19 H 0.081 0.919 20 H 0.066 0.934 21 H 0.094 0.906 22 H 0.070 0.930 23 H 0.102 0.898 24 H 0.119 0.881 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.061 0.939 28 H 0.150 0.850 29 H -0.026 1.026 30 H 0.030 0.970 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.019 6.503 -6.396 12.145 hybrid contribution 1.295 -0.757 -0.225 1.517 sum -6.724 5.746 -6.621 11.048 Atomic orbital electron populations 1.21315 0.90377 1.02636 1.02066 1.21945 0.95802 0.91359 1.02073 1.21206 0.99549 0.93786 1.01661 1.23965 1.02653 1.02679 0.95530 1.21980 0.93843 0.99583 0.90427 1.21382 0.98300 0.96944 1.00348 1.60324 1.04743 1.31260 1.31578 1.19209 0.93522 0.86804 0.91871 1.21554 1.07211 0.96677 1.32474 0.92010 1.25944 1.01923 0.94678 0.97062 1.70084 1.40964 1.03531 1.42608 0.85388 0.78578 0.77708 0.78630 1.20617 1.19177 1.19362 0.92371 0.90573 0.91945 0.93419 0.90634 0.92951 0.89790 0.88075 0.91791 0.90455 0.93924 0.85022 1.02566 0.97000 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.44 8.88 71.98 0.64 -1.80 16 2 C -0.11 -3.22 2.70 -52.18 -0.14 -3.36 16 3 C -0.10 -2.86 9.16 71.98 0.66 -2.20 16 4 C -0.21 -6.49 9.17 30.60 0.28 -6.21 16 5 C 0.03 1.27 2.89 3.53 0.01 1.28 16 6 C -0.11 -4.05 8.50 71.98 0.61 -3.44 16 7 N -0.65 -29.41 6.23 -474.13 -2.95 -32.37 16 8 C 0.21 11.75 4.45 85.55 0.38 12.13 16 9 C -0.54 -31.65 9.32 25.60 0.24 -31.41 16 10 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16 11 C 0.00 0.13 5.46 84.66 0.46 0.60 16 12 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 13 Si 0.97 44.93 29.54 68.60 2.03 46.95 16 14 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 17 H 0.06 1.35 8.03 -2.39 -0.02 1.33 16 18 H 0.08 1.42 7.92 -2.39 -0.02 1.40 16 19 H 0.06 1.31 7.77 -2.39 -0.02 1.29 16 20 H 0.05 1.33 7.69 -2.39 -0.02 1.31 16 21 H 0.07 1.63 7.92 -2.39 -0.02 1.61 16 22 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.08 2.64 7.99 -2.39 -0.02 2.63 16 24 H 0.10 2.80 7.96 -2.39 -0.02 2.78 16 25 H 0.06 2.16 8.03 -2.39 -0.02 2.15 16 26 H 0.08 2.29 7.77 -2.39 -0.02 2.27 16 27 H 0.04 1.83 5.61 -2.38 -0.01 1.81 16 28 H 0.33 14.49 8.08 -89.70 -0.72 13.76 16 29 H -0.04 -2.59 8.14 -2.38 -0.02 -2.61 16 30 H 0.01 0.71 6.35 -2.39 -0.02 0.70 16 31 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -63.79 254.42 2.87 -60.92 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.37 Total: 15.64 kcal Atomic # 6 Polarization: -37.55 SS G_CDS: 3.14 Total: -34.41 kcal Atomic # 7 Polarization: -86.43 SS G_CDS: -2.67 Total: -89.10 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -63.79 2.87 -60.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575563764.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.259 kcal (2) G-P(sol) polarization free energy of solvation -63.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds