Wall clock time and date at job start Mon Mar 30 2020 02:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47297 * 2 1 4 4 C 1.50699 * 109.47492 * 239.99474 * 2 1 3 5 5 H 1.07996 * 120.00495 * 245.87938 * 4 2 1 6 6 C 1.37878 * 119.99649 * 65.87295 * 4 2 1 7 7 N 1.31513 * 119.99672 * 186.71771 * 6 4 2 8 8 Si 1.86798 * 120.00193 * 6.71737 * 6 4 2 9 9 H 1.48496 * 109.47518 * 270.00016 * 8 6 4 10 10 H 1.48500 * 109.46908 * 29.99812 * 8 6 4 11 11 H 1.48496 * 109.47121 * 149.99557 * 8 6 4 12 12 N 1.46905 * 109.46979 * 119.99976 * 2 1 3 13 13 C 1.46902 * 110.99579 * 272.08189 * 12 2 1 14 14 C 1.53000 * 115.55117 * 294.85827 * 13 12 2 15 15 C 1.53004 * 117.50311 * 80.53251 * 13 12 2 16 16 C 1.53001 * 117.50058 * 149.19578 * 13 12 2 17 17 H 1.08997 * 117.50612 * 145.01551 * 16 13 12 18 18 C 1.53004 * 117.49758 * 0.02562 * 16 13 12 19 19 H 1.09005 * 109.47470 * 185.27016 * 1 2 3 20 20 H 1.08994 * 109.47174 * 305.26947 * 1 2 3 21 21 H 1.09002 * 109.46943 * 65.26845 * 1 2 3 22 22 H 0.97001 * 120.00423 * 354.95597 * 7 6 4 23 23 H 1.00900 * 111.00295 * 148.12542 * 12 2 1 24 24 H 1.09004 * 109.46908 * 56.09606 * 14 13 12 25 25 H 1.08999 * 109.47320 * 176.09542 * 14 13 12 26 26 H 1.09001 * 109.47255 * 296.10122 * 14 13 12 27 27 H 1.08997 * 117.50142 * 214.97803 * 15 13 12 28 28 H 1.09000 * 117.49345 * 0.02562 * 15 13 12 29 29 H 1.09006 * 109.46799 * 60.00160 * 18 16 13 30 30 H 1.08999 * 109.47097 * 180.02562 * 18 16 13 31 31 H 1.08998 * 109.47473 * 300.00983 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5728 -1.6406 -1.1341 6 6 1.8020 -0.1731 -2.4790 7 7 2.1221 -0.8546 -3.5574 8 14 1.0354 1.5227 -2.6392 9 1 -0.4430 1.3945 -2.6950 10 1 1.4164 2.3509 -1.4669 11 1 1.5233 2.1711 -3.8828 12 7 2.0196 -0.6925 1.1995 13 6 2.1481 0.2380 2.3289 14 6 3.1982 1.3381 2.1615 15 6 0.8764 0.5875 3.1046 16 6 1.9321 -0.3240 3.7355 17 1 2.5377 0.0901 4.5415 18 6 1.5994 -1.8124 3.8581 19 1 -0.3634 -1.0233 0.0944 20 1 -0.3633 0.5934 0.8390 21 1 -0.3633 0.4300 -0.9334 22 1 2.5864 -1.7023 -3.4754 23 1 2.8943 -1.1605 1.0152 24 1 2.9919 1.9018 1.2516 25 1 3.1623 2.0084 3.0202 26 1 4.1885 0.8878 2.0931 27 1 0.7880 1.6010 3.4959 28 1 -0.0555 0.1266 2.7771 29 1 2.4118 -2.4024 3.4337 30 1 1.4727 -2.0710 4.9093 31 1 0.6764 -2.0241 3.3183 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575579309.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:30 Heat of formation + Delta-G solvation = 11.632385 kcal Electronic energy + Delta-G solvation = -11581.466858 eV Core-core repulsion = 9670.159499 eV Total energy + Delta-G solvation = -1911.307359 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 183.132 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.39904 -34.51199 -31.84331 -29.60691 -28.00368 -26.58804 -24.54805 -20.89187 -20.00802 -18.42682 -17.44346 -15.03035 -14.66693 -14.49308 -13.36705 -12.88553 -12.85149 -12.58511 -12.26422 -11.87113 -11.75772 -11.61897 -11.23035 -10.96635 -10.90585 -10.35555 -10.04089 -9.84817 -9.46126 -8.97462 -8.68097 -8.40833 -7.49145 -6.42039 -4.08193 3.38187 3.43252 3.58920 4.14949 4.47968 4.87862 5.09576 5.28994 5.31513 5.56398 5.68039 5.98698 6.04553 6.11992 6.14843 6.24075 6.30764 6.40978 6.47089 6.59210 6.72633 6.76789 6.87383 6.99600 7.51032 7.77632 8.13680 8.40616 8.54447 8.95357 9.62093 10.97123 Molecular weight = 183.13amu Principal moments of inertia in cm(-1) A = 0.054406 B = 0.012596 C = 0.011991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.521177 B = 2222.334671 C = 2334.595574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.183 3.817 3 H 0.007 0.993 4 C -0.597 4.597 5 H 0.059 0.941 6 C 0.028 3.972 7 N -0.914 5.914 8 Si 1.057 2.943 9 H -0.283 1.283 10 H -0.280 1.280 11 H -0.291 1.291 12 N -0.644 5.644 13 C 0.043 3.957 14 C -0.142 4.142 15 C -0.165 4.165 16 C -0.146 4.146 17 H 0.093 0.907 18 C -0.105 4.105 19 H 0.049 0.951 20 H 0.025 0.975 21 H 0.040 0.960 22 H 0.267 0.733 23 H 0.339 0.661 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.752 3.504 12.141 12.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.075 3.925 3 H 0.025 0.975 4 C -0.635 4.635 5 H 0.077 0.923 6 C -0.177 4.177 7 N -0.549 5.549 8 Si 0.887 3.113 9 H -0.210 1.210 10 H -0.207 1.207 11 H -0.217 1.217 12 N -0.274 5.274 13 C -0.050 4.050 14 C -0.201 4.201 15 C -0.202 4.202 16 C -0.165 4.165 17 H 0.111 0.889 18 C -0.162 4.162 19 H 0.069 0.931 20 H 0.044 0.956 21 H 0.059 0.941 22 H 0.077 0.923 23 H 0.158 0.842 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.102 0.898 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.939 4.363 11.194 12.170 hybrid contribution 1.331 -0.634 0.787 1.672 sum -0.608 3.729 11.982 12.563 Atomic orbital electron populations 1.22073 0.98776 1.00381 0.98148 1.19556 0.91775 0.93442 0.87771 0.97532 1.22226 1.40045 1.09782 0.91483 0.92254 1.25730 0.96204 1.03773 0.91958 1.70809 1.38029 1.15708 1.30320 0.83815 0.76469 0.75619 0.75420 1.20987 1.20657 1.21746 1.60413 1.33755 1.27752 1.05475 1.21564 0.96910 0.95674 0.90823 1.21786 0.98386 0.98122 1.01778 1.23202 0.94367 0.99206 1.03457 1.22452 1.02821 0.95772 0.95446 0.88925 1.21095 1.02161 0.93302 0.99637 0.93142 0.95596 0.94077 0.92312 0.84206 0.91756 0.92976 0.92606 0.89821 0.88357 0.92548 0.93788 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.83 37.16 0.33 -2.78 16 2 C 0.18 4.42 2.10 -68.86 -0.14 4.28 16 3 H 0.01 0.18 4.57 -51.93 -0.24 -0.06 16 4 C -0.60 -16.87 8.90 -34.44 -0.31 -17.18 16 5 H 0.06 1.80 7.86 -52.49 -0.41 1.39 16 6 C 0.03 0.81 5.42 -17.82 -0.10 0.71 16 7 N -0.91 -28.40 13.70 55.43 0.76 -27.64 16 8 Si 1.06 26.02 25.42 -169.99 -4.32 21.70 16 9 H -0.28 -6.66 6.76 56.52 0.38 -6.28 16 10 H -0.28 -6.49 6.35 56.52 0.36 -6.13 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 N -0.64 -13.55 5.80 -94.24 -0.55 -14.09 16 13 C 0.04 0.76 2.23 -131.60 -0.29 0.47 16 14 C -0.14 -2.33 9.68 37.16 0.36 -1.97 16 15 C -0.16 -2.63 8.83 -26.69 -0.24 -2.87 16 16 C -0.15 -2.19 6.13 -90.58 -0.56 -2.75 16 17 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 18 C -0.10 -1.51 9.64 37.16 0.36 -1.16 16 19 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 20 H 0.03 0.52 6.21 -51.93 -0.32 0.19 16 21 H 0.04 0.96 4.56 -51.93 -0.24 0.72 16 22 H 0.27 8.26 8.72 -40.82 -0.36 7.90 16 23 H 0.34 7.30 8.27 -39.29 -0.33 6.98 16 24 H 0.06 1.18 6.59 -51.93 -0.34 0.83 16 25 H 0.05 0.73 8.10 -51.93 -0.42 0.31 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.10 1.66 6.94 -51.93 -0.36 1.30 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.97 7.90 -51.93 -0.41 0.56 16 LS Contribution 245.47 15.07 3.70 3.70 Total: -1.00 -29.48 245.47 -5.81 -35.30 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -4.82 Total: 4.28 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: -0.59 Total: -23.24 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.21 Total: -41.74 kcal Atomic # 14 Polarization: 26.02 SS G_CDS: -4.32 Total: 21.70 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -29.48 -5.81 -35.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575579309.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.930 kcal (2) G-P(sol) polarization free energy of solvation -29.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds